{"id":91,"date":"2021-09-28T17:14:26","date_gmt":"2021-09-28T10:14:26","guid":{"rendered":"https:\/\/conf.icgbio.ru\/bgrs2000\/?page_id=91"},"modified":"2021-09-29T13:45:19","modified_gmt":"2021-09-29T06:45:19","slug":"oral","status":"publish","type":"page","link":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/program\/oral\/","title":{"rendered":"Schedule of oral presentations"},"content":{"rendered":"

<\/p>\n

Participants are welcome to pass their demonstration material to the room \u2116 200<\/span><\/p>\n

of the House of Scientists to the Slide Manager Dmiry Oshchepkov in 30 minutes prior to the beginning of the Sessions.<\/p>\n

August , 7, Monday<\/p>\n

13:00-13:30\u00a0Opening Ceremony<\/u><\/p>\n

Greetings for participants of the Conference:
\nN.A. Kolchanov and R. Hofestaedt<\/p>\n

Speech of Welcome: L.L. Kisselev<\/p>\n

13:30-17:55\u00a0Evening Session<\/u><\/p>\n

Computer analysis of regulatory genomic sequences<\/p>\n

Chairpersons: E. Wingender and A. Sarai<\/p>\n\n\n\n\n\n\n\n\n
Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Discovery and modeling of transcriptional regulatory regions<\/b><\/i><\/span><\/p>\n

J.W. Fickett<\/b><\/span>\u00a0and W.W. Wasserman<\/span><\/p>\n

SmithKline Beecham Pharmaceuticals, USA<\/span><\/p>\n<\/td>\n

\n

13:30<\/span><\/p>\n<\/td>\n

\n

0:45<\/span><\/p>\n<\/td>\n<\/tr>\n

Composite modules – the DNA blueprints of combinatorial transcriptional regulation in multicellular organisms<\/b><\/i><\/span><\/p>\n

A.E. Kel,<\/b><\/span>\u00a0O.V. Kel-Margoulis, A.G. Romashchenko, E. Wingender,
\nV.A. Ratner<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

14:15<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Detection of cis-acting regulatory elements in plants: a Gibbs sampling approach<\/span><\/p>\n

G. Thijs, S. Rombauts, M. Lescot, K. Marchal, B.\u00a0De Moor<\/span>, Y. Moreau<\/span>,<\/span><\/b>
\nP. Rouze<\/span><\/p>\n

Katholieke Universiteit, Belgium<\/span><\/p>\n<\/td>\n

\n

14:40<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Nucleosome formation sites: coding, organization, and function<\/b><\/i><\/span><\/p>\n

N.A. Kolchanov\u00a0<\/b><\/span>and V.G. Levitsky<\/span><\/b><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

15:05<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Coffee break<\/b><\/span><\/p>\n<\/td>\n

\n

15:30<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

 <\/p>\n

August , 7, Monday<\/p>\n

13:30-17:55\u00a0Evening Session<\/u><\/p>\n

Computer analysis of regulatory genomic sequences<\/p>\n

Chairpersons: E. Wingender and A. Sarai<\/p>\n\n\n\n\n\n\n\n\n
Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Point mutations within 663-666 bp of intron 6 of the human TDO2 gene, associated with a number of psychiatric disorders, damage the YY-1 transcription factor binding site<\/b><\/i><\/span><\/p>\n

T.I. Merkulova<\/b><\/span>, G.V. Vasiliev, M.P. Ponomarenko, V.F. Kobzev,
\nO.A. Podkolodnaya, Y.V. Ponomarenko<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

15:50<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

The Bsp-repeats from\u00a0Canidae<\/i>\u00a0contain a bidirectional promoter for the RNA polymerase III potentially capable of encoding double-stranded RNA<\/b><\/i><\/span><\/p>\n

N.S. Yudin<\/b><\/span>, T.M. Naykova, Yu.V. Kondrakhin, V.F.\u00a0Kobzev,
\nA.G. Romashchenko<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

16:15<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Non-canonical sequence elements as additional signals in promoter recognition by E.coli RNA polymerase<\/b><\/i><\/span><\/p>\n

O.N. Ozoline<\/b><\/span>, A.A. Deev, I.V. Arkhipov<\/span><\/p>\n

Institute of Cell biophysics RAS, Russia<\/span><\/p>\n<\/td>\n

\n

16:40<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Finding transcription factor binding sites in coregulated genes by exhaustive sequence search<\/b><\/i><\/span><\/p>\n

Sz.M. Kielbasa<\/b><\/span>, J.O. Korbel, D. Beule, J.\u00a0Schuchhardt H. Herzel<\/span><\/p>\n

Institute for Theoretical Biology, Germany<\/span><\/p>\n<\/td>\n

\n

17:05<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Computer analysis of 5’UTR regions of eukaryotic mRNAs<\/b><\/i><\/span><\/p>\n

A.V. Kochetov<\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

17:30<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

August, 8, Tuesday<\/p>\n

9:00-13:10\u00a0Morning Session<\/u><\/p>\n

Bioinformatics of DNA, RNA and protein structure.<\/p>\n

Structural genomics.<\/p>\n

Chairpersons:\u00a0<\/span>A. Adzhubei and K. Nakata<\/span><\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n
Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Structure-based target prediction and structure-function relationship of transcription factors<\/b><\/i><\/span><\/p>\n

A. Sarai<\/p>\n

RIKEN Tsukuba Life Science Center, Japan<\/span><\/p>\n<\/td>\n

\n

9:00<\/span><\/p>\n<\/td>\n

\n

0:45<\/span><\/p>\n<\/td>\n<\/tr>\n

An informational system FastProt on three-dimensional structures of DNA, RNA and proteins integrated with GeneExpress<\/span><\/p>\n

D.A. Grigorovich,\u00a0<\/span>V.A.\u00a0Ivanisenko<\/b><\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

9:45<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

An approach to structural alignment with genetic algorithm<\/b><\/i><\/span><\/p>\n

S.J. Park\u00a0<\/b><\/span>and M. Yamamura<\/span><\/p>\n

Tokyo Institute of Technology, Japan<\/span><\/p>\n<\/td>\n

\n

10:10<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

The module organization of the A and B boxes in the tRNA intragenic promoter<\/span><\/p>\n

I.B. Rogozin, Yu.I. Kondrakhin, T.M. Naykova, N.S. Yudin, M.I. Voevoda,\u00a0<\/span>A.G. Romashchenko<\/b><\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

10:35<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Coffee break<\/b><\/span><\/p>\n<\/td>\n

\n

11:00<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Protein primary sequences as Markov chains<\/b><\/i><\/span><\/p>\n

C.K. Mitra<\/b><\/span>\u00a0and A. Sen<\/span><\/p>\n

University of Hyderabad, Hyderabad,India<\/span><\/p>\n<\/td>\n

\n

11:20<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Structure codes of RNA<\/b><\/i><\/span><\/p>\n

I.I. Titov<\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/span><\/p>\n<\/td>\n

\n

11:45<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

CRASP: software package for analysis of physicochemical parameters of aligned sequences of protein families<\/b><\/i><\/span><\/p>\n

D.A. Afonnikov<\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/span><\/p>\n<\/td>\n

\n

12:10<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Large scale protein modelling<\/b><\/i><\/span><\/p>\n

M.C. Peitsch, A.Adzhubei<\/p>\n

Glaxo Wellcome Experimental Research, Plan-les-Ouates, Switzerland<\/span><\/p>\n<\/td>\n

\n

12:35<\/span><\/p>\n<\/td>\n

\n

0:35<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

August, 8, Tuesday<\/p>\n

15:00-19:20\u00a0Evening Session<\/u><\/p>\n

INTAS Section<\/p>\n

Introduction to the INTAS Section: Life sciences at INTAS<\/p>\n

I. Schmidt (\u00a0<\/span>15:00-15:20\u00a0<\/b><\/u><\/span>)<\/span><\/p>\n

Chairpersons: I. Schmidt, G.A. Nevinsky, L.I. Korochkin<\/p>\n\n\n\n\n\n\n\n\n\n
Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Theoretical Design of Effective Antisense Oligonucleotides<\/b><\/i><\/span><\/p>\n

G.A. Sczakiel<\/p>\n

University of Lubeck, Germany<\/span><\/p>\n<\/td>\n

\n

15:20<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Xenotransplantation of drosophila embryonic nerve cells into mammals brain: molecular genetic and clinical aspects<\/b><\/i><\/span><\/p>\n

L.I. Korochkin<\/b><\/span>, M.A. Alexandrova, V.N. Bashkirov,
\nS.G. Dzitoeva, G.V. Pavlova, A.A. Trukhatcheva,
\nM.B. Evgeniev, \u0415.R. \u041codestova, A.A. Grosman<\/span><\/p>\n

Institute of GeneBiology, Russia<\/span><\/p>\n<\/td>\n

\n

15:40<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Heat shock knowledge base<\/b><\/i><\/span><\/p>\n

I.L. Stepanenko<\/b><\/span>, V.G. Levitsky, H.C. Schroeder<\/span><\/p>\n

I<\/span>nstitute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

16:00<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Detection of location and type of single nucleoitide replacement in any amplificated region of genome. Colorimertric test systems based on ligation of tandem of short oligonucleotides<\/b><\/i><\/span><\/p>\n

G.M. Dymshits<\/b><\/span>, M.R. Kabilov, V.P. Neischtadt,
\nL.M. Skobeltsyna, V.F. Zarytova, E.M. Ivanova, D.V. Pyshnyi<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

16:20<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Comparative characterization of the 5\u2019-regions of the vole, human and mouse Xist gene: conserved and repetitive sequences<\/b><\/i><\/span><\/p>\n

N.N. Kolesnikov<\/b><\/span>, T.B. Nesterova, S.Ya.\u00a0Slobodyanyuk,
\nA.V. Shevchenko, M.V.\u00a0Pavlova, I.B. Rogozin,
\nE.A. Elisaphenko, A.E.\u00a0Kel, V.G. Levitsky, N. Brockdorff, S.M.Zakian<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

16:40<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Lawc – a new homeyotic mutation in Drosophila which influences on fly behavior<\/b><\/i><\/span><\/p>\n

O.B. Simonova<\/p>\n

Institute of Gene Biology, Russia<\/span><\/p>\n<\/td>\n

\n

17:00<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

August, 8, Tuesday<\/p>\n

15:00-19:20\u00a0Evening Session<\/u><\/p>\n

INTAS Section<\/p>\n

Chairpersons: I. Schmidt, G.A. Nevinsky, L.I. Korochkin<\/p>\n\n\n\n\n\n\n\n\n\n\n
 <\/p>\n

Coffee break<\/b><\/span><\/p>\n<\/td>\n

\n

17:00<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

tRNA database, its history and present developements<\/b><\/i><\/span><\/p>\n

M. Sprinzl<\/p>\n

Universitat Bayreuth, Germany<\/span><\/p>\n<\/td>\n

\n

17:20<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

How DNA repair enzymes recognize DNA<\/b><\/i><\/span><\/p>\n

G.A. Nevinsky<\/b><\/span>, N.L. Vasilenko, A.A. Ishchenko,
\nD.V. Bugreev, I.P. Bugreeva<\/span><\/p>\n

Institute of Bioorganic Chemistry SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

17:40<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Identification of optimal target sites for antisense oligonucleotides in the\u00a0<\/span>a<\/span>-sarcin loop region of E. coli 23S rRNA<\/span><\/p>\n

V.A. Petyuk,\u00a0<\/span>M.A. Zenkova<\/b><\/span>, V.V. Vlassov<\/span><\/p>\n

Institute of Bioorganic Chemistry SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

18:00<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Redox modulation of DNA topoisomerase I activity in plants<\/b><\/i><\/span><\/p>\n

Yu.M. Konstantinov<\/b><\/span>, V.I. Tarasenko, I.B. Rogosin<\/span><\/p>\n

Siberian Institute of Plant Physiology and Biochemistry SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

18:20<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Distribution of histones within defined band-interband region of Drosophila melanogaster polytene chromosomes<\/b><\/i><\/span><\/p>\n

S.A. Demakov<\/b><\/span>, Yu.B. Schwartz, H. Saumweber, V.F. Semeshin, I.F. Zhimulev<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

18:40<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n

Computational biochemistry of hepatocyte<\/b><\/i><\/span><\/p>\n

O.V. Demin<\/p>\n

A.N. Belozersky Institute of Physico-Chemical Biology, Russia<\/span><\/p>\n<\/td>\n

\n

19:00<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

August, 9, Wednesday<\/p>\n

9:00-13:00\u00a0Morning Session<\/u><\/p>\n

Databases on regulatory genomic sequences and regulatory proteins<\/p>\n

Chairpersons:\u00a0<\/span>O.N. Ozoline and<\/span>\u00a0M.S. Gelfand<\/span><\/p>\n\n\n\n\n\n\n\n\n
Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

The transpath signal transduction database: a knowledge base on signal transduction networks<\/span><\/p>\n

F. Schacherer, C. Choi, U. Gotze, M. Krull,\u00a0<\/span>E.\u00a0Wingender<\/b><\/span>.<\/span><\/p>\n

Gesellschaft fur Biotechnologische Forschung mbH, Braunschweig, Germany<\/span><\/p>\n<\/td>\n

\n

9:00<\/span><\/p>\n<\/td>\n

\n

0:45<\/span><\/p>\n<\/td>\n<\/tr>\n

Receptor Database (RDB) as an analytical tool for the drug design<\/b><\/i><\/span><\/p>\n

K. Nakata<\/b><\/span>, T. Takai, T. Nakano, T. Kaminuma<\/span><\/p>\n

National Institute of Health Sciences, Tokyo, Japan<\/span><\/p>\n<\/td>\n

\n

9:45<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Transcription Regulatory Regions Database (TRRD)<\/span><\/p>\n

E.A. Ananko, O.A. Podkolodnaya,\u00a0<\/span>E.V. Ignatieva<\/b><\/span>,
\nO.V. Kel-Margoulis, A.E. Kel, T.I. Merkulova, I.L.\u00a0Stepanenko,
\nT.N. Goryachkovskaya, N.L. Podkolodny, D.A.\u00a0Grigorovich,
\nA.N. Naumochkin, I.M.\u00a0Korostishevskaya, I.V.\u00a0Lokhova, A.G.\u00a0Romashchenko, N.A.\u00a0Kolchanov<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

10:10<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Activated databases on DNA sites, their structure, function and activity<\/b><\/i><\/span><\/p>\n

J.V. Ponomarenko<\/b><\/span>, G.V. Orlova, M.P.\u00a0Ponomarenko,
\nS.V. Lavryushev, A.S Frolov<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

10:35<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Coffee break<\/b><\/span><\/p>\n<\/td>\n

\n

11:00<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

August, 9, Wednesday<\/p>\n

9:00-13:00\u00a0Morning Session<\/u><\/p>\n

Databases on regulatory genomic sequences and regulatory proteins<\/p>\n

Chairpersons:\u00a0<\/span>O.N. Ozoline and<\/span>\u00a0M.S. Gelfand<\/span><\/p>\n\n\n\n\n\n\n\n
Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Database on composite regulatory elements in eukaryotic genes (COMPEL)<\/b><\/i><\/span><\/p>\n

O.V. Kel-Margoulis<\/b><\/span>, A.G. Romashchenko, I.V. Deineko,
\nN.A Kolchanov, E. Wingender, A.E. Kel<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/i><\/p>\n<\/td>\n

\n

11:20<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

PATHO DB – a database bridging the gap between the description of gene regulatory defects and clinical application<\/b><\/i><\/span><\/p>\n

M. Pruess<\/b><\/span>, T. Meinhardt, E. Wingender<\/span><\/p>\n

Biobase Biological Databases GmbH, Germany<\/span><\/p>\n<\/td>\n

\n

11:45<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

TRANSTERM – a database of RNA components and motifs<\/b><\/i><\/span><\/p>\n

G.H. Jacobs<\/b><\/span>, P.A. Stockwell, C.M. Brown<\/span><\/p>\n

University of Otago, New Zealand<\/span><\/p>\n<\/td>\n

\n

12:10<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Genomics-aided drug development: population genomics ad informatics at work<\/b><\/i><\/span><\/p>\n

R.S. Judson<\/p>\n

 <\/p>\n

Genaissance Pharmaceuticals, USA<\/span><\/i><\/p>\n<\/td>\n

\n

12:35<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

August, 10, Thursday<\/p>\n

9:00-13:00\u00a0Morning Session<\/u><\/p>\n

Comparative and evolutionary genomics<\/p>\n

Chairpersons: V.A. Ratner and L. Milanezi<\/p>\n\n\n\n\n\n\n\n\n
Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Comparative approach to analysis of bacterial regulatory patterns<\/b><\/i><\/span><\/p>\n

M.S. Gelfand<\/b><\/span>, M. Baitalyuk, E.V. Koonin, P. Novichkov, E. Novichkova, E. Panina, E. Permina, A.B. Rakhmaninova, D. Rodionov, A. Vitreschak, A.A. Mironov<\/span><\/p>\n

GosNIIGenetika, Russia<\/span><\/p>\n<\/td>\n

\n

9:00<\/span><\/p>\n<\/td>\n

\n

0:45<\/span><\/p>\n<\/td>\n<\/tr>\n

Comparative genomics:homology based gene identification and gene structure validation<\/b><\/i><\/span><\/p>\n

T. Wiehe<\/b><\/span>, S. Gebauer-Jung, J. Abril, R. Guigo<\/span><\/p>\n

Max Planck Institute for Chemical Ecology, Germany<\/span><\/p>\n<\/td>\n

\n

9:45<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

INTERPRO as a new tool for whole genome analysis. A comparitive analysis of mycobacterium tuberculosis, bacillus subtilis and escherichia coli as a case study<\/b><\/i><\/span><\/p>\n

N.J. Mulder<\/b><\/span>, W. Fleischmann, R. Apweiler<\/span><\/p>\n

European Bioinformatics Institute, UK<\/span><\/p>\n<\/td>\n

\n

10:10<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

No mystery of orfans in genomics – generation of orfans in the antisense of coding sequences<\/b><\/i><\/span><\/p>\n

P. Mackiewicz<\/b><\/span>, M. Kowalczuk, A. Gierlik, D.\u00a0Szczepanik, A. Nowicka, M.R. Dudek, S.\u00a0Cebrat<\/span><\/p>\n

University of Wroclaw, Poland<\/span><\/p>\n<\/td>\n

\n

10:35<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Coffee break<\/b><\/span><\/p>\n<\/td>\n

\n

11:00<\/span><\/p>\n<\/td>\n

\n

0:20<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

August, 10, Thursday<\/p>\n

9:00-13:00\u00a0Morning Session<\/u><\/p>\n

Comparative and evolutionary genomics<\/p>\n

Chairpersons: V.A. Ratner and L. Milanezi<\/p>\n\n\n\n\n\n\n\n
Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Pro-Gen: Prediction of the exon-intron structure by comparison of genomic sequences<\/span><\/p>\n

P.S. Novichkov, M.S. Gelfand,\u00a0<\/span>A.A. Mironov<\/b><\/span><\/p>\n

GosNIIGenetika, Russia<\/span><\/p>\n<\/td>\n

\n

11:20<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Biological role categories for regulators and mechanisms of divergence of function<\/b><\/i><\/span><\/p>\n

M. Riley<\/p>\n

Marine Biological Laboratory, Woods Hole, USA<\/span><\/p>\n<\/td>\n

\n

11:45<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

In silico<\/i>\u2019 analysis of point mutation effects on the coding region of human beta globin gene<\/b><\/i><\/span><\/p>\n

P. Arrigo<\/b><\/span>, G. Ivaldi, P.P. Cardo<\/span><\/p>\n

C.N.R. Istituto Circuiti Elettronici, Italy<\/span><\/p>\n<\/td>\n

\n

12:10<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

MIRs – family of the repeats common for primates, mammals and vertabrates<\/b><\/i><\/span><\/p>\n

E.V. Korotkov<\/p>\n

Centre of Bioengineering RAS, Russia<\/span><\/p>\n<\/td>\n

\n

12:35<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

August, 10, Thursday<\/p>\n

15:00-17:50\u00a0Evening Session<\/u><\/p>\n

Comparative and evolutionary genomics<\/p>\n

Chairpersons: A. Mironov and E. Trifonov<\/p>\n

\n\n\n\n\n\n\n\n\n\n
Title<\/span><\/p>\n

Authors<\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Evolution of the code and the earliest proteins. Reconstruction from modern sequences<\/b><\/i><\/span><\/p>\n

E. Trifonov<\/p>\n

Weizmann Institute of Science, Israel<\/span><\/p>\n<\/td>\n

\n

15:00<\/span><\/p>\n<\/td>\n

\n

0:45<\/span><\/p>\n<\/td>\n<\/tr>\n

Computer modeling of evolution of the genetic diversity of interacting polygenic systems and patterns of mobile genetic elements in the course of selection for the quantitative character<\/b><\/i><\/span><\/p>\n

V.A. Ratner<\/b><\/span>, L.A. Vasilyeva, E.V.\u00a0Bubenshchikova,
\nO.V. Antonenko<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

15:45<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Molecular modelling of disease-causing single-nucleotide polymorphisms in collagen<\/span><\/p>\n

Ju.V. Milchevsky, V.E. Ramensky, B.S.Zorov, N.G. Esipova,\u00a0<\/span>V.G.Tumanyan<\/b><\/span><\/p>\n

Engelhardt Institute of Molecular Biology RAS, Russia<\/span><\/p>\n<\/td>\n

\n

16:10<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Coffee break<\/b><\/span><\/p>\n<\/td>\n

\n

16:35<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Analysis of mutational hotspots in human disease genes and mutational spectra<\/b><\/i><\/span><\/p>\n

I.B. Rogozin<\/b><\/span>, V.B. Berikov, G.V. Glazko<\/span><\/p>\n

I<\/span>nstitute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

17:00<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

The evolution of regulatory families in Archea and Eubacteria: a common origin of transcriptional repressors<\/span><\/p>\n

E. Perez-Rueda and\u00a0<\/span>J. Collado-Vides<\/b><\/span><\/p>\n

CIFN-UNAM, Cuernavaca, Mexico<\/span><\/p>\n<\/td>\n

\n

17:25<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<\/div>\n

August, 11, Friday<\/p>\n

9:00-13:05\u00a0Morning Session<\/u><\/p>\n

Bioinformatics of gene networks and metabolic pathways<\/p>\n

Chairpersons: J. Collado-Vides and J.W. Fickett<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n
Title\u00a0<\/span>Authors<\/i><\/span><\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Gene circuits and fly segments: solving an inverse problem in Drosophila<\/b><\/i><\/span><\/p>\n

J. Reinitz<\/p>\n

Mount Sinai School of Medicine, USA<\/span><\/p>\n<\/td>\n

\n

9:00<\/span><\/p>\n<\/td>\n

\n

0:45<\/span><\/p>\n<\/td>\n<\/tr>\n

Modelling of gene networks dynamics<\/b><\/i><\/span><\/p>\n

V.A. Likhoshvai<\/b><\/span>, Yu.G. Matushkin, E.V. Ignatieva, A.V. Ratushny, E.A. Ananko, O.A. Podkolodnaya<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Russia<\/span><\/p>\n<\/td>\n

\n

9:45<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Metabolic engineering electronical infrastructure for the detection of inborn errors<\/b><\/i><\/span><\/p>\n

R. Hofestaedt<\/p>\n

Otto-von-Guericke Universitat Magdeburg, Germany<\/span><\/p>\n<\/td>\n

\n

10:10<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Application of the method of generalized threshold models for the analysis of the eukaryotic control gene subnetworks<\/b><\/i><\/span><\/p>\n

R.N. Tchuraev<\/b><\/span>, A.V. Galimzyanov<\/span><\/p>\n

Institute of Biology of URC of the RAS, Russia<\/span><\/p>\n<\/td>\n

\n

10:35<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Coffee break<\/b><\/span><\/p>\n<\/td>\n

\n

11:00<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

GeneNet database: a technology for a formalized description of gene networks<\/b><\/i><\/span><\/p>\n

E.A. Ananko<\/b><\/span>, F.A. Kolpakov, N.A. Kolchanov<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/span><\/p>\n<\/td>\n

\n

11:25<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Parallel simulated annealing algorithms for gene circuits analysis<\/b><\/i><\/span><\/p>\n

Y. Deng<\/p>\n

SUNY-Stony Brook, USA<\/span><\/p>\n<\/td>\n

\n

11:50<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Modeling of molecular regulation networks with Meta-Model<\/b><\/i><\/span><\/p>\n

J. Cai<\/b><\/span>, X. Lu, Y. Li<\/span><\/p>\n

Bioinformatics Institute, School of Information Science and technology, Tsinghua University, P.R. China<\/span><\/p>\n<\/td>\n

\n

12:15<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Bioinformatics, electronic biology and a new functional model for biological cells<\/b><\/i><\/span><\/p>\n

W.L. Zheng<\/p>\n

Institute of Molecular Biology, Liu Hua Qiao Hospital, P.R. China<\/span><\/p>\n<\/td>\n

\n

12:40<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

August, 11, Friday<\/p>\n

15:00-18:40\u00a0Evening Session<\/u><\/p>\n

Functional Genomics<\/p>\n

Chairpersons: J. Reinitz and I. Rogozin<\/p>\n\n\n\n\n\n\n\n\n\n\n\n
Title\u00a0<\/span>Authors<\/i><\/span><\/p>\n

Speaker’s affiliation<\/span><\/p>\n<\/td>\n

\n

Time<\/span><\/p>\n<\/td>\n

\n

Dur.<\/span><\/p>\n<\/td>\n<\/tr>\n

Functional genomics: an algorithmic perspective<\/b><\/i><\/span><\/p>\n

A. Califano<\/p>\n

IBM Computational Biology Center, USA<\/span><\/p>\n<\/td>\n

\n

15:00<\/span><\/p>\n<\/td>\n

\n

0:45<\/span><\/p>\n<\/td>\n<\/tr>\n

Periodic patterns in sequence organization of replication origin of Escherichia coli k-12 chromosome<\/i><\/span><\/p>\n

G.I. Kravatskaya<\/span>,\u00a0<\/span>N.G. Esipova<\/b><\/span><\/p>\n

VA Engelhardt Institute of Molecular Biology, Russia<\/span><\/p>\n<\/td>\n

\n

15:45<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

ESTMAP: a program for ESTs mapping on a genomic sequence<\/b><\/i><\/span><\/p>\n

L. Milanesi<\/b><\/span>, I.B. Rogozin<\/span><\/p>\n

CNR-ITBA, Italy<\/span><\/p>\n<\/td>\n

\n

16:10<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

BASIO: a software system for segmentation of biological sequences into domains with homogenous composition<\/span><\/p>\n

V.E. Ramensky,\u00a0<\/span>V.Ju. Makeev<\/b><\/span>, M.A. Roytberg,
\nV.G. Tumanyan<\/span><\/p>\n

VA Engelhardt Institute of Molecular Biology RAS, Russia<\/span><\/p>\n<\/td>\n

\n

16:35<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Coffee break<\/b><\/span><\/p>\n<\/td>\n

\n

17:00<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Complexity measures of symbolic sequences and their application to DNA analysis<\/b><\/i><\/span><\/p>\n

N. Chuzhanova<\/b><\/span>, M. Krawczak, V.D. Gusev, L.A.\u00a0Nemytikova, D.N.\u00a0Cooper<\/span><\/p>\n

Department of Computer Science, University of Wales, UK<\/span><\/p>\n<\/td>\n

\n

17:25<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Functional gene networks – a data management approach for bioinformatics<\/b><\/i><\/span><\/p>\n

O. Gabrielyan<\/b><\/span>, J.C. Freytag<\/span><\/p>\n

Kelman GmbH, Berlin, Germany<\/span><\/p>\n<\/td>\n

\n

17:50<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n

Bioinformatic system identification<\/b><\/i><\/span><\/p>\n

R.D. King<\/b><\/span>, S.M. Garrett, G.M. Coghill<\/span><\/p>\n

Department of Computer Science, University of Wales, U.K.<\/span><\/p>\n<\/td>\n

\n

18:15<\/span><\/p>\n<\/td>\n

\n

0:25<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

<\/p>","protected":false},"excerpt":{"rendered":"

Participants are welcome to pass their demonstration material to the room \u2116 200 of the House of Scientists to the Slide Manager Dmiry Oshchepkov in 30 minutes prior to the beginning of the Sessions. August , 7, Monday 13:00-13:30\u00a0Opening Ceremony … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":13,"featured_media":0,"parent":88,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/wp-json\/wp\/v2\/pages\/91"}],"collection":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/wp-json\/wp\/v2\/users\/13"}],"replies":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/wp-json\/wp\/v2\/comments?post=91"}],"version-history":[{"count":3,"href":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/wp-json\/wp\/v2\/pages\/91\/revisions"}],"predecessor-version":[{"id":94,"href":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/wp-json\/wp\/v2\/pages\/91\/revisions\/94"}],"up":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/wp-json\/wp\/v2\/pages\/88"}],"wp:attachment":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2000\/en\/wp-json\/wp\/v2\/media?parent=91"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}