{"id":42,"date":"2021-09-27T14:39:37","date_gmt":"2021-09-27T07:39:37","guid":{"rendered":"https:\/\/conf.icgbio.ru\/bgrs2002\/?page_id=42"},"modified":"2021-09-27T16:52:19","modified_gmt":"2021-09-27T09:52:19","slug":"programs","status":"publish","type":"page","link":"https:\/\/conf.icgbio.ru\/bgrs2002\/en\/programs\/","title":{"rendered":"Program of oral presentations"},"content":{"rendered":"

<\/p>\n

The Conference Sessions will be held in the Small Conference Hall and in Music Salon<\/p>\n

(room \u2116220) of the House of Scientists<\/p>\n

Participants are welcome to pass their demonstration material to the room \u2116 200<\/span><\/p>\n

of the House of Scientists in the 30 min prior to the beginning of the Sessions<\/p>\n

July, 14, Sunday<\/u><\/b>\u00a0Foyer of the Small Conference Hall<\/p>\n

12:30-19:00 Registration of the conference participants*<\/p>\n

Lunch 14:30-15:30<\/span><\/p>\n

*Participants who come later are welcome for registration in the Organizing Committee room (House of scientists room \u2116200) on any conference day.<\/p>\n

July, 15, Monday<\/u>\u00a0<\/b>Small Conference Hall<\/p>\n

9:00-9:30 Registration of the conference participants (Foyer of the Small Conference Hall)<\/p>\n

9:30-10:00 Opening Ceremony<\/p>\n

Speech of Welcome: Academician V.K. Shumny, Director of the Institute of Cytology & Genetics SB RAS;<\/p>\n

Greetings for participants of the Conference: Prof.N.A.Kolchanov; Prof.R.Hofestadt<\/p>\n

10:00-13:30\u00a0<\/b>Morning Session<\/p>\n

REGULATORY GENOMIC SEQUENCES<\/span><\/b><\/p>\n

Chairpersons:<\/p>\n

Dr. E. Wingender,\u00a0<\/span>German Research Centre for Biotechnology, Braunschweig, Germany<\/span><\/p>\n

Dr. V.\u00a0<\/b>Makeev, State Scientific Centre NIIGenetika, Moscow, Russia<\/span><\/p>\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Mizushima H<\/span><\/b>., Ichikawa H., Ohki M.Center for Medical Genomics and Cancer Genomics Division, National Cancer Center Research Institute, Tokyo, Japan<\/span><\/p>\n

ANALYSIS TOOL FOR FINDING TRANSCRIPTION REGULATORY ELEMENTS, USING TRANSCRIPTION FACTOR DATA BASE (TFDB)<\/span><\/p>\n<\/td>\n

\n

10:00-10:30<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Ignatieva E.V.,<\/span><\/b>\u00a0Ananko E.A., Podkolodnaya O.A., Stepanenko I.L., Merkulova T.I., Pozdnyakov M.A., Podkolodny N.L., Naumochkin A.N., Romashchenko A.G.<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): ITS STATUS IN 2002<\/span><\/p>\n<\/td>\n

\n

10:30-11:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/b><\/p>\n<\/td>\n

\n

11:00-11:30<\/span><\/p>\n<\/td>\n<\/tr>\n

 <\/p>\n

Frith M.C<\/span><\/b>., Hansen U., Weng Z. Boston University, Boston, USA<\/span><\/p>\n

A GIBBS SAMPLING ALGORITHM TO DETECT CLUSTERED CIS-ELEMENTS<\/span><\/p>\n<\/td>\n

\n

11:30-12:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1, 2<\/span>\u00a0Wingender E.,\u00a0<\/b>1<\/sup>Kel A.E.,\u00a01<\/sup>G\u00f6\u00dfling E.,\u00a01<\/sup>Hornischer K.,\u00a01<\/sup>Lewicki-Potapov B.,\u00a01<\/sup>Tchekmenev D.,\u00a01<\/sup>Kel-Margoulis O.V.<\/span><\/p>\n

1 BIOBASE GmbH, Wolfenb\u00fcttel, Germany;\u00a02<\/sup>\u00a0GBF German Research Centre for Biotechnology, Braunschweig, Germany<\/p>\n

ALL HUMAN GENOME ANALYSIS FOR REGULATORY SIGNALS<\/span><\/p>\n<\/td>\n

\n

12:00-12:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Lyubetsky V.A.,\u00a0Rubanov L.I.<\/b><\/p>\n

Institute for Information Transmission Problems RAS, Moscow, Russia<\/p>\n

PARALLEL ALGOTITHM FOR SEARCHING REGULATORY SIGNAL IN BACTERIAL GENOME<\/span><\/p>\n<\/td>\n

\n

12:30-13:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Oshchepkov D. Yu<\/span><\/b>., Turnaev I.I.,Vityaev E.E.<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

SITECON: A METHOD FOR RECOGNIZING TRANSCRIPTION FACTOR BINDING SITES BASING ON ANALYSIS OF THEIR CONSERVATIVE PHYSICOCHEMICAL AND CONFORMATIONAL PROPERTIES<\/span><\/p>\n<\/td>\n

\n

13:00-13:30<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Lunch\u00a0<\/span>13:30-14:30<\/span><\/p>\n

14:30-18:00\u00a0<\/b>Evening Session<\/p>\n

REGULATORY GENOMIC SEQUENCES<\/span><\/b><\/p>\n

Chairpersons:<\/p>\n

Prof. V. Lyubetsky, Institute for Information Transmission Problems RAS, Moscow, Russia<\/p>\n

Dr. H. Mizushima, Center for Medical Genomics and Cancer Genomics Division, National Cancer Center Research Institute, Tokyo, Japan<\/p>\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

<\/b>3<\/span><\/sup>Lifanov, A.P.,\u00a01<\/sup>Nazina, A.G.,\u00a02<\/sup>Makeev, V.J<\/b>.,\u00a01<\/sup>Papatsenko, D.A.,\u00a04<\/sup>Regnier, M.,\u00a01<\/sup>Desplan.C.<\/span><\/p>\n

1<\/span>Department of Biology, New York University, New York, USA<\/span><\/p>\n

2State Scientific Centre NIIGenetika, Moscow, Russia<\/p>\n

3Institute of Chemical Physics, Russian Academy of Sciences, Moscow, Russia<\/p>\n

4INRIA, Roquencour, France<\/p>\n

COMPUTER IDENTIFICATION OF TRANSCRIPTION FACTOR BINDING SITES IN EARLY DEVELOPMENTAL ENHANCERS OF DROSOPHILA BASED ON REDUNDANT WORDS<\/span><\/p>\n<\/td>\n

\n

14:30-15:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Lockwood C R.,<\/span><\/b>\u00a0Frayling T M<\/span><\/p>\n

Department of Diabetes and Vascular Medicine, University of Exeter, United Kingdom<\/p>\n

HNF1-ALPHA BINDING SITES IN A COMPUTER SEARCH<\/span><\/p>\n<\/td>\n

\n

15:00-15:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Vityaev E.E.,\u00a02<\/sup>Pozdnyakov M.A.<\/b>,2<\/sup>Orlov\u00a0Yu.L.,\u00a02<\/sup>Vishnevsky O.V.,\u00a02<\/sup>Podkolodny N.L.\u00a01<\/sup>Sobolev Institute of Mathematics, SB RAS, Novosibrisk, Russia<\/span><\/p>\n

2Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia<\/p>\n

GENE DISCOVERY COMPUTER SYSTEM FOR ANALYSIS OF REGULATORY REGIONS<\/span><\/p>\n<\/td>\n

\n

15:30-16:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee break<\/span><\/b><\/p>\n<\/td>\n

\n

16:00-16:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Sarai A.<\/span><\/b><\/p>\n

RIKEN Tsukuba Institute, Tsukuba 305-0074, Japan<\/p>\n

STRUCTURE-SPECIFICITY RELATIONSHIP IN PROTEIN-DNA RECOGNITION<\/span><\/p>\n<\/td>\n

\n

16:30-17:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,3<\/span>Shelest E<\/b>.,\u00a01<\/sup>Kel A.E.,\u00a01<\/sup>G\u00f6\u00dfling E.,\u00a01, 2<\/sup>Wingender E.<\/span><\/p>\n

1 GBF German Research Centre for Biotechnology, Braunschweig, Germany;<\/p>\n

2 BIOBASE GmbH, Wolfenb\u00fcttel, Germany;<\/p>\n

3 permanent address: Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia.<\/p>\n

PREDICTION OF POTENTIAL C\/EBP\/NF-k B COMPOSITE ELEMENTS USING THE MATRIX-BASED SEARCH METHODS<\/span><\/p>\n<\/td>\n

\n

17:00-17:30<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Foyer of the Small Conference Hall<\/p>\n

17:30\u00a0<\/b>-18:30 1st Poster Session and Computer Demonstrations “REGULATORY GENOMIC SEQUENCES<\/span>“<\/b><\/p>\n

July, 16, Tuesday\u00a0<\/u><\/b>Small Confernce Hall<\/p>\n

9:00-13:30 Morning Session<\/b><\/p>\n

COMPARATIVE AND EVOLUTIONARY GENOMICS<\/p>\n

Chairpersons:<\/p>\n

Prof. L.Zhivotovsky,\u00a0Institute of General Genetics RAS, Moscow, Russia<\/span><\/p>\n

Dr. C. Watkins,\u00a0University of London, Egham, Surrey, UK<\/span><\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>\u00a0Vandenbogaert M<\/b>.,\u00a02<\/sup>Makeev V.<\/span><\/p>\n

1 INRIA Rocquencourt – LaBRI Bordeaux I, Le Chesnay, France and\u00a02<\/sup><\/span>\u00a0<\/span>State Scientific Centre\u00a02<\/sup>“GosNIIGenetika”, Moscow, Russia<\/span><\/p>\n

ANALYSIS OF BACTERIAL RM-SYSTEMS THROUGH GENOME-SCALE ANALYSIS AND RELATED TAXONOMIC ISSUES<\/span><\/p>\n<\/td>\n

\n

9:00-9:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Permina E. A.<\/p>\n

GosNII Genetika, Moscow, Russia<\/p>\n

COMPARATIVE ANALYSIS OF REGULATORY INTERACTIONS IN BACTERIAL GENOMES<\/span><\/p>\n<\/td>\n

\n

9:30-10:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Ramensky V.E.,<\/b>\u00a02,3<\/sup>Bork P.,\u00a01,2<\/sup>Sunyaev S.R.<\/span><\/p>\n

1Engelhardt Institute of Molecular Biology (EIMB), Vavilova 32, 119991 Moscow, Russia\u00a02<\/sup>European Molecular Biology Laboratory (EMBL), Heidelberg, Germany,\u00a03<\/sup>Max-Delbrueck Center for Molecular Medicine (MDC), Berlin, Germany<\/p>\n

SURVEY OF HUMAN NON-SYNOMYMOUS SNPs<\/span><\/p>\n<\/td>\n

\n

10:00-10:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Zhivotovsky L.A.<\/span><\/b><\/p>\n

Institute of General Genetics RAS, Moscow, Russia<\/p>\n

COMPUTATIONAL BIOLOGY AND ANALYSIS OF HUMAN POPULATIONS WITH USE OF DNA MARKERS<\/span><\/p>\n<\/td>\n

\n

10:30-11:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee break<\/span><\/b><\/p>\n<\/td>\n

\n

11:00-11:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Watkins C.<\/p>\n

Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, UK<\/p>\n

THE CHANNEL CAPACITY OF SELECTIVE BREEDING: LIMITS ON THE INFORMATION STORABLE IN GENETIC SYSTEMS<\/span><\/p>\n<\/td>\n

\n

11:30-12:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>\u00a0Yuryev A.,\u00a02<\/sup>Makeyev A.<\/b><\/span><\/p>\n

1Orchid Biosciences Inc., Princeton, NJ USA<\/p>\n

2InforMax Inc, Bethesda, MD USA<\/p>\n

GENOTYPE CLASSIFICATION AND ALLELIC PATTERN RECOGNITION USING KOHONEN SELF-ORGANIZING MAPS<\/span><\/p>\n<\/td>\n

\n

12:00-12:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Favorov A.V<\/span><\/b>.,\u00a02<\/sup>Ochs M.F.<\/span><\/p>\n

1State Scientific Centre “GosNIIGenetica” , Moscow, Russia<\/p>\n

2Fox Chase Cancer Center, Philadelphia, USA.<\/p>\n

MCMC METHOD FOR IDENTIFICATION OF ALLELIC PATTERNS IN DATA WITH QUANTITATIVELY DESCRIBABLE PHENOTYPIC FEATURES<\/span><\/p>\n<\/td>\n

\n

12:30-13:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Lyubetsky V.A<\/span><\/b>., V\u2019yugin V.V.<\/span><\/p>\n

Institute for Information Transmission Problems RAS, Moscow, Russia<\/p>\n

METHOD OF HORIZONTAL GENE TRANSFER DETERMINATION USING PHYLOGENETIC DATA<\/span><\/p>\n<\/td>\n

\n

13:00-13:30<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Lunch\u00a0<\/span>13:30-14:30<\/span><\/p>\n

Foyer of the Small Conference Hall<\/p>\n

14:30-16:15 2nd Poster Session and Computer Demonstrations “GENOME STRUCTURE AND FUNCTION”, “COMPARATIVE AND EVOLUTIONARY GENOMICS”, “RNA COMPUTATIONAL BIOLOGY”,\u00a0<\/span>“GENERAL PROBLEMS OF BIOINFORMATICS”<\/span><\/b><\/p>\n

15:45-16:15 Coffee-break<\/p>\n

July, 17, Wednesday<\/u><\/b>\u00a0Small Conference Hall<\/p>\n

9:00-13:00 Morning Session<\/p>\n

GENOME STRUCTURE AND FUNCTION<\/p>\n

Chairperson:<\/p>\n

Dr. M. Gelfand, GosNIIGenetika, Moscow, Russia<\/p>\n\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,2<\/span>Chuzhanova N.A<\/b>.,\u00a03<\/sup>Cooper D.N.<\/span><\/p>\n

1 Department of Computer Science, Cardiff University, PO Box 916, Cardiff CF24 3XF, UK<\/p>\n

2 Institute of Mathematics, Russian Academy of Science, 630090 Novosibirsk, Russia<\/p>\n

3 Institute of Medical Genetics, University of Wales College of Medicine, Cardiff CF14 4XN UK<\/p>\n

MECHANISMS OF MUTAGENESIS AND THE ROLE OF LOCAL DNA SEQUENCE COMPLEXITY<\/span><\/p>\n<\/td>\n

\n

9:00-9:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Korotkov E.V<\/span><\/b>., Korotkova M.A. Kudryashov N.A.<\/span><\/p>\n

Center of Bioengineering RAS, Moscow, Russia<\/p>\n

Moscow Physical Engineering Institute, Moscow, Russia<\/p>\n

INFORMATION CONCEPTION OF PERIODICITY OF SYMBOLIC TEXTS<\/span><\/p>\n<\/td>\n

\n

9:30-10:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Vorobjev Y. N.<\/p>\n

Novosibirsk Institute of Bioorganic Chemistry RAS, Novosibirsk, Russia
\nA MACROMOLECULAR MODELING AS A TOOL TO EXPAND BIOINFORMATICS DATABASES<\/span><\/p>\n<\/td>\n

\n

10:00-10:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Oparina N.J<\/span><\/b>., Lacroix M.-H., Mashkova T.D.<\/span><\/p>\n

Engelhardt Institute of Molecular Biology RAS, Moscow, Russia<\/p>\n

PERICENTROMERIC ALPHA SATELLITES: NON-RANDOM DISTRIBUTION OF STRUCTURAL REARRANGEMENTS AND INSERTIONS OF DISPERSED ELEMENTS ALONG THE MONOMER<\/span><\/p>\n<\/td>\n

\n

10:30-11:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/b><\/p>\n<\/td>\n

\n

11:00-11:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Orlov Yu.L<\/b>.,\u00a02<\/sup>Gusev V.D.,\u00a02<\/sup>Nemytikova L.A.,\u00a02<\/sup>Potapov V.N.<\/span><\/p>\n

1<\/sup>\u00a0Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/span><\/p>\n

2<\/sup>\u00a0Institute of Mathematics SB RAS, Novosibirsk, Russia<\/span><\/p>\n

DECOMPOSITION OF GENOME SEQUENCES BY REPEAT FRAGMENTS<\/span><\/p>\n<\/td>\n

\n

11:30-12:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Paskhin A.I.<\/b>\u00a0,\u00a0<\/b>2<\/sup>Ramensky V.E.,\u00a03<\/sup>Gelfand M.S.,\u00a03<\/sup>Makeev V.J.<\/span><\/p>\n

1 Moscow Institute of Physics and Technology, Moscow Region, Russia<\/p>\n

2 Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia<\/p>\n

3 GosNIIGenetika, Moscow, Russia<\/p>\n

IDENTIFICATION OF CODING REGIONS IN GENOMES OF LOWER EUKARYOTES BY COMPOSITIONAL SEGMENTATION OF COMPLETE GENOMES<\/span><\/p>\n<\/td>\n

\n

12:00-12:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Regnier M.<\/p>\n

INRIA Le Chesnay France<\/p>\n

MATHEMATICAL TOOLS FOR REGULATORY SIGNALS EXTRACTION<\/span><\/p>\n<\/td>\n

\n

12:30-13:00<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Lunch 13:00 -14:00<\/p>\n

14:00 -18:15 Evening Session<\/p>\n

GENERAL PROBLEMS OF BIOINFORMATICS<\/p>\n

Chairpersons:<\/p>\n

Prof. N.Zagoruiko, Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

Dr. T.Hodgman, GlaxoSmithKline, Stevenage, UK<\/p>\n

Plenary lecture 14:00-14:45<\/p>\n

Ratner V.A.<\/p>\n

Institute of Cytology and Genetics, SB RAS; Novosibirsk State University, Novosibirsk, Russia<\/p>\n

VIRTUAL REALITY AND REGULATORY SYSTEMS<\/p>\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,2<\/span>Heymann S.,\u00a02<\/sup>Gabrielyan O.R.,\u00a03<\/sup>Ghazaryan G.G.,\u00a03<\/sup>Danielyan E.A.,\u00a03<\/sup>Hakobyan G.G.\u00a0<\/b>,\u00a03<\/sup>Hakobyan G.O.<\/b><\/span><\/p>\n

1<\/span>Humboldt-University Berlin, Institute of Computer Science, Berlin, Germany;<\/span><\/p>\n

2Kelman GmbH, Berlin, Germany;<\/p>\n

3Yerevan State University, Yerevan, Armenia<\/p>\n

TOWARDS A METRICAL SPACE OF BIOLOGICAL SEQUENCES<\/span><\/p>\n<\/td>\n

\n

14:45-15:15<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Ivanov A.O. , Tuzhilin A.A.<\/p>\n

Faculty of Mechanics and Mathematics, Moscow State University, Moscow, Russia<\/p>\n

MINIMAL TREES IN PHYLOGENETIC SPACES<\/span><\/p>\n<\/td>\n

\n

15:15-15:45<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Zagoruiko N.G.,\u00a0<\/b>1<\/sup>Pichueva A.G.,\u00a01<\/sup>Kutnenko O.A. ,\u00a02<\/sup>Borisova I.A. ,\u00a02<\/sup>Kochetov A.V.,<\/span><\/p>\n

2Ivanisenko V.A.,\u00a02<\/sup>Nikolaev S.V.,\u00a02<\/sup>Likhoshvai V.A.,\u00a02\u00a0<\/sup>Ratushny A.V.<\/p>\n

1Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

APPLICATION OF THE METHODS OF INTELECTUAL DATA ANALYSIS TO SOLVING THE PROBLEMS OF BIOINFORMATICS<\/span><\/p>\n<\/td>\n

\n

15:45-16:15<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/b><\/p>\n<\/td>\n

\n

16:15-16:45<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Yang Z.L.,\u00a01,2<\/sup>Liu G.R.<\/b>,\u00a02,3\u00a0<\/sup>Lam K.Y.<\/span><\/p>\n

1Center for Advanced Computations in Engineering Science (ACES) Department of Mechanical Engineering, National University of Singapore, Singapore<\/p>\n

2 SMA Fellow, Singapore-MIT Alliance<\/p>\n

3Institute of High Performance Computing (IHPC), Singapore<\/p>\n

A MODIFIED GENETIC ALGORITHM WITH LOCAL AND GLOBAL SEARCH TECHNIQUES<\/span><\/p>\n<\/td>\n

\n

16:45-17:15<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,2<\/span>Vityaev E.E.,\u00a0<\/b>3<\/sup>Kovalerchuk B.<\/span><\/p>\n

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

3Central Washington University (Ellensburg), USA<\/p>\n

BIOINFORMATICS: KNOWLEDGE DISCOVERY AND DATA MINING<\/span><\/p>\n<\/td>\n

\n

17:15-17:45<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Hodgman T.C.<\/p>\n

GlaxoSmithKline, Stevenage, United Kindom<\/p>\n

THE IMPORTANCE OF GENOME REGULATION AND STRUCTURE TO THE PHARMACEUTICAL INDUSTRY<\/span><\/p>\n<\/td>\n

\n

17:45-18:15<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

July, 18, Thursday<\/u>\u00a0<\/b>Small Hall of the House of Scientists<\/p>\n

9:00-13:30 Morning Session<\/p>\n

RNA COMPUTATIONAL BIOLOGY<\/p>\n

Chairperson:<\/p>\n

Dr. A.Mironov, GosNIIGenetika, Moscow, Russia<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Gorbunov K.Yu<\/span><\/b>., Lyubetsky V.A.<\/span><\/p>\n

Institute for Information Transmission Problems RAS, Moscow, Russia<\/p>\n

AN ALGORITHM FOR SEARCHING OF COMMON SECONDARY STRUCTURES IN A SET OF RNA SEQUENCES<\/span><\/p>\n<\/td>\n

\n

9:00-9:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Mironov A.<\/p>\n

GosNIIGenetika, Moscow, Russia<\/p>\n

REGULATION OF BACTERIAL GENE EXPRESSION ON THE RNA LEVEL<\/span><\/p>\n<\/td>\n

\n

9:30-10:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Pospisil H., Herrmann A., Pankow H., Reich J.<\/span><\/p>\n

Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany<\/span><\/p>\n

A DATABASE ON ALTERNATIVE SPLICE FORMS ON THE INTEGRATED GENETIC MAP SERVICE (IGMS)<\/span><\/p>\n<\/td>\n

\n

10:00-10:30<\/span><\/p>\n<\/td>\n<\/tr>\n

Gelfand M.<\/span>GosNIIGenetika, Moscow, Russia
\nEVOLUTION OF ALTERNATIVE SPLICING<\/span><\/td>\n		\n

10:30-11:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/b><\/p>\n<\/td>\n

\n

11:00-11:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Kochetov A.V<\/b>.,\u00a02<\/sup>Sarai A.<\/span><\/p>\n

1Institute of Cytology and Genetics SB RAS, Novosiborsk, Russia<\/p>\n

2Tsukuba Institute, The Institute of Physical Chemical Research (RIKEN), Tsukuba, Japan<\/p>\n

MRNA-LOCATED TRANSLATIONAL SIGNALS<\/span><\/p>\n<\/td>\n

\n

11:30-12:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Matushkin Yu.G<\/span><\/b>., Likhoshvai V.A., Kochetov A.V.<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Novosiborsk, Russia<\/p>\n

TRANSLATION ELONGATION STAGES AND STRUCTURAL FEATURES OF mRNA REGION AT THE TRANSLATION START SITE CRITICAL FOR THE EFFICIENCY OF GENE EXPRESSION IN UNICELLULAR ORGANISMS<\/span><\/p>\n<\/td>\n

\n

12:00-12:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Vishnevsky O.V.\u00a0<\/b>,\u00a02<\/sup>Avdeeva I.V.\u00a0<\/span><\/p>\n

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2Novosibirsk State University, Novosibirsk, Russia<\/p>\n

STUDY OF THE SPECIFIC CONTEXTUAL FEATURES OF TRANSLATION INITIATION AND TERMINATION REGIONS IN EUKARYOTES<\/span><\/p>\n<\/td>\n

\n

12:30-13:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Frenkel F.E<\/span><\/b>, Korotkov E.V.<\/span><\/p>\n

Center “Bioengineering” RAS, Moscow, Russia<\/p>\n

REVEALING AND FUNCTIONAL ANALYSIS OF TRNA-LIKE SEQUENCES IN VARIOUS GENOMES<\/span><\/p>\n<\/td>\n

\n

13:00-13:30<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Lunch 13:30-14:30<\/p>\n

14:30 -16:30 3d Poster Session and Computer Demonstrations\u00a0STRUCTURAL COMPUTATIONAL BIOLOGY”, “SYSTEM COMPUTER BIOLOGY”<\/span><\/b>16:00 -16:30 Coffee-break<\/u><\/b><\/p>\n

July, 18, Thursday<\/u><\/b>\u00a0Music Salon (room \u2116220)<\/p>\n

9:00-12:20 Morning Session<\/p>\n

FUNDAMENTAL GENETIC PROCESSES AND MECHANISMS<\/span>;\u00a0INTAS SECTION<\/span><\/p>\n

Chairpersons:<\/p>\n

Prof. N.Yankovsky, Institute of General Genetics RAS, Moscow, Russia<\/p>\n

Sidorenko S.P., Kavetsky Institute of Experimental Pathology, Oncology and Radiobiology NASU, Kyiv, Ukraine<\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Introductory remarks\u00a0<\/span><\/b>(Prof. G.Nevinsky)<\/span><\/p>\n<\/td>\n

\n

9:00-9:05<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,2<\/span>Sinyakov A.N<\/b>.,\u00a03<\/sup>Arimondo P.B.,\u00a03<\/sup>Bailly C.,\u00a03<\/sup>Sun J-Sh.,\u00a03<\/sup>Garestier T.,\u00a03<\/sup>Boutorine A.S.,<\/span><\/p>\n

1,2Ryabinin V.A.,\u00a03<\/sup>H\u00e9l\u00e8ne C.<\/p>\n

1State Research Center for Virology and Biotechnology “Vector”, Kol’tsovo, Novosibirsk Region, Russia,<\/p>\n

2Institute of Bioorganic Chemistry, SB RAS, Novosibirsk, Russia,<\/p>\n

3Laboratoire de Biophysique, INSERM UR 565, CNRS UMR 8646, Mus\u00e9um National d’Histoire Naturelle, Paris, France<\/p>\n

SYNTHESIS, PHYSICO-CHEMICAL AND BIOLOGICAL STUDIES OF SEQUENCE-SPECIFIC CONJUGATES AS THE AGENTS FOR REGULATION OF GENE EXPRESSION ON THE LEVEL OF DOUBLE-STRANDED DNA<\/span><\/p>\n<\/td>\n

\n

9:05-9:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Nevinsky G.A.\u00a0<\/b>,\u00a01<\/sup>Ishchenko A.A.,\u00a02<\/sup>Sinitsina O.I.,\u00a02<\/sup>Vasunina E.A.,\u00a01<\/sup>Koval V.V.,\u00a01<\/sup>Vasilenko N.L.,\u00a03<\/sup>Saparbaev M.,\u00a01<\/sup>Fedorova O.S.<\/span><\/p>\n

1Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia<\/p>\n

2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia;<\/p>\n

3Group de Reparation des Lesions Radio et Chimio-Induites, Paris, France<\/p>\n

REPAIR OF 8-OXOGUANINE IN DNA OF PROKARYOTES, WISTAR RATS AND OXYS RATS WITH OVERGENERATION OF FREE RADICALS<\/span><\/p>\n<\/td>\n

\n

9:30-9:55<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Allinson S. L.,\u00a0Dianov G. L.<\/b><\/span><\/p>\n

MRC Radiation and Genome Stability Unit, Harwell, Oxfordshire, United Kingdom<\/p>\n

CO-ORDINATION OF BASE EXCISION REPAIR<\/span><\/p>\n<\/td>\n

\n

9:55-10:20<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Chelobanov B.P.,\u00a0Laktionov P.P.<\/b>, Kharkova M.V., Rykova E.Yu., Pyshnyi D.V., Pyshnaya I.A.,\u00a01<\/sup>Kim A.A.,\u00a02<\/sup>Sczakiel G., Vlassov V.V.<\/p>\n

Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia<\/p>\n

1Institute of Nuclear Physics, Tashkent, Uzbekistan<\/p>\n

2Institute of Molecular Medicine, Luebeck, Germany<\/b><\/p>\n

ISOLATION AND IDENTIFICATION OF CELL SURFACE NUCLEIC ACIDS-BINDING PROTEINS<\/span><\/p>\n<\/td>\n

\n

10:20-10:45<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/b><\/p>\n<\/td>\n

\n

10:45-11:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Schr\u00f6der H.C<\/span><\/b>., M\u00fcller W.E.G.<\/span><\/p>\n

Institut f\u00fcr Physiologische Chemie, Universit\u00e4t Mainz, Mainz, Germany and German Center of Excellence BIOTECmarin<\/p>\n

MOLECULAR APPROACHES TO STUDY STRESS ADAPTATION, BIOACTIVITY, AND PHYLOGENETIC RELATIONSHIPS WITHIN THE PORIFERA<\/span><\/p>\n<\/td>\n

\n

11:00-11:25<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Sidorenko S.P<\/span><\/b>., Mikhalap S.V., Shlapatska L.M., Yurchenko M.Yu., Akimov Yu.M., Chekhun V.F.<\/span><\/p>\n

Kavetsky Institute of Experimental Pathology, Oncology and Radiobiology National Academy of Sciences of Ukraine, Kyiv, Ukraine.<\/p>\n

SIGNAL TRANSDUCTION PATHWAYS INITIATED VIA CELL SURFACE RECEPTOR CD150<\/span><\/p>\n<\/td>\n

\n

11:25-11:50<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

<\/a>1,2<\/span><\/a>Lebedeva N.A<\/b>.,\u00a01<\/sup>Rechkunova N.I.,\u00a01<\/sup>Khodyreva S.N.,\u00a02<\/sup>Favre A. and\u00a01,2<\/sup>Lavrik O.I.<\/span><\/p>\n

1Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>Institut Jacques Monod (CNRS, Universite Paris 6, Universite Paris 7), Paris, France<\/p>\n

BINARY SYSTEM OF PHOTOAFFINITY REAGENTS FOR SELECTIVE LABELLING OF DNA POLYMERASES IN NUCLEAR EXTRACT<\/span><\/p>\n<\/td>\n

\n

11:50-12:10<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Gruntenko N.E<\/span><\/b>., Adonjeva N.V., Karpova E.K., Chentsova N.A., Faddeeva N.V., Rauschenbach I.Yu.<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

DOPAMINE AND JUVENILE HORMONE IN THE CONTROL OF DROSOPHILA REPRODUCTION UNDER NORMAL CONDITIONS AND HEAT STRESS<\/span><\/p>\n<\/td>\n

\n

12:10-12:30<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Foyer of the Small Conference Hall<\/p>\n

12:30-13:00 Poster Session\u00a0“FUNDAMENTAL GENETIC PROCESSES AND MECHANISMS; INTAS SECTION”<\/b><\/span><\/p>\n

Lunch 13:00 -14:00<\/p>\n

14:00 -17:15 Evening Session<\/b><\/p>\n

FUNDAMENTAL GENETIC PROCESSES AND MECHANISMS<\/span>;\u00a0INTAS SECTION<\/span><\/p>\n

Chairpersons:<\/p>\n

Dr. I.Schmidt (INTAS)<\/p>\n

Prof. H. Schr\u00f6der, Institut f\u00fcr Physiologische Chemie, Universit\u00e4t Mainz, Mainz, Germany<\/p>\n

Prof. George Nevinsky, Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia
\nsupervisor of the INTAS Section at BGRS’2002<\/p>\n\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Yurlova A.A<\/span><\/b>., Belyakin S.N., Makunin I.V., Zhimulev I.F. Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/span><\/p>\n

CLONING OF\u00a0SUPPRESSOR OF UNDERREPLICATION<\/i>\u00a0GENE FROM\u00a0D. ERECTA<\/i>\u00a0(REVEALS LOW SUBSTITUTION LEVEL FOR N-TERMINAL PART OF PROTEIN)<\/span><\/p>\n<\/td>\n

\n

14:00-14:25<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Adonina I., Vatolina T., Scherban A.,\u00a0Salina E.A.<\/b><\/p>\n

The Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

THE GENOMIC ORGANIZATION AND EVOLUTION OF AEGILOPS SPELTOIDES SUBTELOMERIC REGIONS<\/span><\/p>\n<\/td>\n

\n

14:25-14:50<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1\u00a0<\/span>Graphodatsky A<\/b>.,\u00a01<\/sup>Perelman P.,\u00a01<\/sup>Alkalaeva E.,\u00a01<\/sup>Trifonov V.,\u00a01<\/sup>Shtukkert A.,\u00a01<\/sup>Serdukova\u00a0N.,\u00a01<\/sup>Biltueva L.,\u00a01<\/sup>Vorobieva N.,\u00a02<\/sup>Ferguson-Smith M.A.,\u00a02<\/sup>Yang F.,\u00a02<\/sup>O\u2019Brien P.,\u00a03<\/sup>Robinson T.J.,\u00a04<\/sup>Suwattana D.,\u00a05<\/sup>Sharipov I.K.<\/span><\/p>\n

1Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia<\/p>\n

2University of Cambridge, UK<\/p>\n

3University of Stellenbosch, SAR<\/p>\n

4Chulalongkorn University, Bangkok, Thailand<\/p>\n

5Institute of Genetics and Cytology, Alma-Ata, Kazakhstan<\/p>\n

KARYOTYPE EVOLUTION IN MAMMALS: A REAPPRAISAL BY COMPARATIVE CHROMOSOME PAINTING<\/span><\/p>\n<\/td>\n

\n

14:50-15:15<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Khusnutdinova E<\/b>.,\u00a01<\/sup>Bermisheva M.,\u00a01<\/sup>Victorova T.,1<\/sup>Korshunova T.,\u00a01<\/sup>Salimova A.,\u00a03<\/sup>Svyatova G.,\u00a02<\/sup>Tambets K.,\u00a02<\/sup>Willems R.<\/span><\/p>\n

1Institute of Biochemistry and Genetics of the Ufa Scientific Center of RAS, Ufa, Russia<\/p>\n

2Dept. Evolutionary Biology, Tartu University, Tartu, Estonia<\/p>\n

3Republican centre of health of mother and child, Kazakhstan<\/p>\n

PHYLOGEOGRAPHY OF MITOCHONDRIAL LINEAGES OF TURKIC AND URALIC – SPEAKING PEOPLE<\/span><\/p>\n<\/td>\n

\n

15:15-15:40<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Borinskaya S.A.,\u00a02<\/sup>Korotaev\u00a0<\/sup>A.B.<\/span><\/p>\n

1 Vavilov Institute of General Genetics, Moscow, Russia<\/p>\n

2 Russian State University for the Humanities, Moscow, Russia<\/p>\n

CORRELATIONS BETWEEN GENETIC AND CULTURAL TRAITS IN POPULATIONS OF HUMANS<\/span><\/p>\n<\/td>\n

\n

15:40-16:05<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/p>\n<\/td>\n

\n

16:05-16:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Mazin A. V.<\/p>\n

Department of Biochemistry, School of Medicine, MCP Hahnemann University, Philadelphia, USA<\/p>\n

A COMBINATORIAL PRINCIPLE IN ORGANIZATION OF THE HOMOLOGOUS RECOMBINATION SYSTEM IN EUKARYOTES<\/span><\/p>\n<\/td>\n

\n

16:30-16:55<\/span><\/p>\n<\/td>\n<\/tr>\n

Dr. I.Schmid<\/td>\n\n

16:55-17:15<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

July, 19, Friday<\/u>\u00a0<\/b>Small Hall of the House of Scientists<\/p>\n

9:00-13:00 Morning Session<\/p>\n

STRUCTURAL COMPUTATIONAL BIOLOGY<\/p>\n

Chairpersons:<\/p>\n

Prof. E.Korotkov, Center of Bioengineering RAS, Moscow, Russia<\/p>\n

Dr. A.Sarai RIKEN Tsukuba Institute, Japan<\/p>\n\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>B\u0142a\u017cewicz J.,\u00a0<\/span>2<\/span><\/sup>Hammer P.L.,\u00a01<\/sup><\/span>\u0141ukasiak P.<\/span><\/b><\/p>\n

1<\/span>\u00a0Institute of Computing Sciences, Poznan Univ. of Technology, Poznan, POLAND & Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, POLAND<\/span><\/p>\n

2 Rutgers Center for Operations Research, Rutgers University, New Jersey, USA<\/p>\n

LOGICAL ANALYSIS OF DATA APPROACH TO THE PREDICTION OF PROTEIN SECONDARY STRUCTURES<\/span><\/p>\n<\/td>\n

\n

9:00-9:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Bogdanov Yu.F<\/span><\/b>., Dadashev S.Ya., Grishaeva T.M.<\/span><\/p>\n

Vavilov Institute of General Genetics RAS, Moscow, Russia<\/p>\n

DEVELOPMENT OF A STRATEGY FOR COMPUTER-ASSISSTED SEARCHING FOR FUNCTIONALLY SIMILAR PROTEINS IN EVOLUTIONARILY DISTANT ORGANISMS<\/span><\/p>\n<\/td>\n

\n

9:30-10:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Kuznetsov V.A<\/span><\/b>.,\u00a01<\/sup>Pickalov V.V.<\/span><\/p>\n

The Laboratory of Integrative and Medical Biophysics, National Institute of Child Health and Human Development, NIH, Bethesda, USA<\/p>\n

1 Institute of Theoretical and Applied Mechanics SB RAS, Novosibirsk, Russia<\/p>\n

THE NUMBERS OF PROTEIN DOMAIN SEQUENCES AND PROTEIN CODING GENES IN THE EVOLVED PROTEOMES<\/span><\/p>\n<\/td>\n

\n

10:00-10:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,2<\/span>\u00a0Ivanisenko V.A<\/b>.,\u00a01<\/sup>\u00a0Grigorovich D.A.<\/span><\/p>\n

1 Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2 SRC VB “Vector”, Koltsovo, Russia<\/p>\n

PDBSITE \u2013 DATABASE ON PROTEIN ACTIVE SITES AND THEIR ENVIRONMENT<\/span><\/p>\n<\/td>\n

\n

10:30-11:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/b><\/p>\n<\/td>\n

\n

11:00-11:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Afonnikov D. A<\/span><\/b>., Nikolaev S.V., Ivanisenko V.A.<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

CLASSIFICATION OF LOCAL SPATIAL ENVIRONMENT OF AMINO ACID RESIDUES BY PHYSICOCHEMICAL CHARACTERISTICS: ANALYSIS OF TRANSCRIPTION FACTOR DNA-BINDING DOMAINS<\/span><\/p>\n<\/td>\n

\n

11:30-12:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Krivov S. V.\u00a01<\/sup>,\u00a0Chekmarev S. F.<\/b>\u00a03<\/sup>\u00a0and Karplus M.\u00a01,2<\/sup><\/p>\n

1Laboratoire de Chimie Biophysique, ISIS, Universit\u00e9 Louis Pasteur, Strasbourg, France<\/p>\n

2Department of Chemistry & Chemical Biology, Harvard University, Cambridge, Massachusetts, USA<\/p>\n

3Institute of Thermophysics, SB RAS, Novosibirsk, Russia<\/p>\n

CONFINEMENT MOLECULAR DYNAMICS AND ITS APPLICATION TO THE STUDY OF POTENTIAL ENERGY SURFACES AND CONFORMATIONAL TRANSITIONS IN BIOMOLECULES<\/span><\/p>\n<\/td>\n

\n

12:00-12:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Logvinenko T.<\/b>,\u00a02<\/sup>Liu J.S.<\/span><\/p>\n

1Statistics Department, Stanford University, Stanford, CA 94305, USA;<\/p>\n

2Statistics Department, Harvard University, Cambridge, MA 02138, USA<\/p>\n

SEQUENTIAL MONTE CARLO AND DIRICHLET MIXTURES FOR EXTRACTING PROTEIN ALIGNMENT MODELS<\/span><\/p>\n<\/td>\n

\n

12:30-13:00<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Lunch 13:00-14:00<\/p>\n

14:00-17:30\u00a0<\/span><\/b>Evening Session<\/p>\n

STRUCTURAL COMPUTATIONAL BIOLOGY<\/span><\/b><\/p>\n

Chairpersons:<\/p>\n

Prof. Yu.Bogdanov, Vavilov Institute of General Genetics RAS, Moscow, Russia<\/p>\n

Dr. V. Kuznetsov, National Institute of Child Health and Human Development, NIH, Bethesda, USA<\/p>\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Vlasov P.K<\/span><\/b>., Kilosanidze G.T., Ukrainskii D.L., Tumanyan V.G., Esipova N.G.<\/span><\/p>\n

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia<\/p>\n

PREDOMINANT CONFORMATIONS OF OLIGOPEPTIDE FRAGMENTS OF GLOBULAR PROTEINS<\/span><\/p>\n<\/td>\n

\n

14:00-14:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,2<\/span>Sunyaev Sh.R.,\u00a01<\/sup>Bogopolsky G.A.,\u00a03,4<\/sup>Oleinikova N.V.,\u00a01,3<\/sup>Vlasov P.K.,\u00a05<\/sup>Finkelstein A.V.,\u00a04<\/sup>Roytberg M.A.<\/b><\/span><\/p>\n

1 Institute of Molecular Biology RAS, Moscow, Russia<\/p>\n

2 European Molecular Biology Laboratory (EMBL), Germany<\/p>\n

3 Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia<\/p>\n

4 Institute of Mathematical Problems in Biology, RAS, Pushchino, Moscow Region, Russia<\/p>\n

5 Institute of Protein Research, RAS, Pushchino, Moscow Region, Russia<\/p>\n

ANCHOR-BASED ALIGNMENT METHOD FOR THE SEQUENCE VS. SEQUENCE AND PROFILE VS. SEQUENCE ALIGNMENT<\/span><\/p>\n<\/td>\n

\n

14:30-15:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Schwarzl S. M<\/span><\/b>., Huang D., Smith J.C., Fischer S.<\/span><\/p>\n

IWR Biocomputing, Heidelberg, Germany<\/p>\n

CHARGE REPARAMETRIZATION FOR FAST ATOMIC-DETAIL CALCULATIONS IN PROTEINS<\/span><\/p>\n<\/td>\n

\n

15:00-15:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Novichkov P.S.<\/p>\n

Integrated Genomics, Moscow, Russia<\/p>\n

PROTEIN FAMILIES EVOLVE AT A CONSTANT RATE<\/span><\/p>\n<\/td>\n

\n

15:30-16:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/b><\/p>\n<\/td>\n

\n

16:00-16:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Sutormin R.A.<\/p>\n

State Scientific Center GosNIIGenetica, Moscow, Russia<\/p>\n

TRANSMEMBRANE SEGMENTS OF TRANSPORT PROTEINS: EVOLUTION, PREDICTION, ALIGNMENT<\/span><\/p>\n<\/td>\n

\n

16:30-17:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1\u00a0<\/span>Titov I.I.<\/b>\u00a0,\u00a02<\/sup>Pal’yanov A.Yu.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/span><\/p>\n

2Novosibirsk State University, Novosibirsk, Russia<\/p>\n

THE INVERSE FOLDING OF BIOPOLYMERS<\/span><\/p>\n<\/td>\n

\n

17:00-17:30<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

July, 20, Saturday<\/u>\u00a0<\/b>Small Conference Hall<\/p>\n

9:00-13:00 Morning Session<\/b><\/p>\n

SYSTEM COMPUTER BIOLOGY<\/p>\n

Chairpersons:<\/p>\n

Dr.\u00a0<\/i><\/b>O.Ozoline, Institute of Cell Biophysics RAS, Pushchino, Moscow Region, Russia<\/p>\n

Dr. L Milanesi, Institute of Biomedical Technology CNR-ITB, Milan, Italy<\/p>\n\n\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,2\u00a0<\/span>Mjolsness E<\/b>.<\/span>,\u00a0<\/span>1<\/span><\/sup>Jonsson H.<\/span>,\u00a0<\/span>2<\/span><\/sup>Shapiro\u00a0<\/sup>B.<\/span>,\u00a0<\/span>1<\/span><\/sup>Meyerowitz E.<\/span><\/p>\n

1<\/span>Division of Biology and\u00a02<\/sup>Jet Propulsion Laboratory, California Institute of Technology, Pasadena, USA<\/span><\/p>\n

MODELING PLANT DEVELOPMENT WITH GENE REGULATION NETWORKS INCLUDING SIGNALING AND CELL DIVISION<\/span><\/p>\n<\/td>\n

\n

9:00-9:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Ratushny A.V<\/b>.,\u00a01<\/sup>Nedosekina E.A.,\u00a01<\/sup>Ignatieva E.V.,\u00a01<\/sup>Ananko E.A.,\u00a01<\/sup>Podkolodnaya O.A.,\u00a01<\/sup>Podkolodny N.L.,\u00a02<\/sup>Fadeev S.I.,\u00a02<\/sup>Berezin A.Yu.,\u00a02<\/sup>Gainova I.A.,\u00a03<\/sup>Latypov A.F.,\u00a03<\/sup>Nikulichev Yu.V.,\u00a01<\/sup>Matushkin Yu.G.,\u00a01<\/sup>Likhoshvai V.A.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0Institute of Mathematics SB RAS, Novosibirsk, Russia
\n3<\/sup>\u00a0Institute of Theoretical and Applied Mechanics SB RAS, Novosibirsk, Russia
\nMODELING OF GENE NETWORKS BY USING GENERALIZED CHEMICAL KINETIC APPROACH<\/span><\/p>\n<\/td>\n

\n

9:00-10:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Freier A.,\u00a0<\/b>1<\/sup>Hofest\u00e4dt R.,\u00a02<\/sup>Lange M.<\/span><\/p>\n

1 Bioinformatics Workgroup, Fakulty of Technology, Bielefeld University, Germany<\/p>\n

2 Plant Genome and Resource Center, IPK Gatersleben, Germany<\/p>\n

IIUDB: OBJECT-ORIENTED SYSTEM FOR MODELLING, INTEGRATION AND ANALYSIS OF GENE CONTROLLED METABOLIC NETWORKS<\/span><\/p>\n<\/td>\n

\n

10:00-10:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Kolchanov N.A.,<\/span><\/b>\u00a0Stepanenko I.L., Podkolodnaya O.A., Ananko E.A., Ignatieva
\nE.V., Podkolodny N.L.<\/span><\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

GENE NETWORKS: PRINCIPLES OF ORGANIZATION AND MECHANISMS OF OPERATION AND INTEGRATION<\/span><\/p>\n<\/td>\n

\n

10:30-11:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/b><\/p>\n<\/td>\n

\n

11:00-11:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Surkova S. Yu.,\u00a01<\/sup>Samsonova M.G.,\u00a0<\/b>1<\/sup>Myasnikova E.M.<\/span><\/p>\n

1 St.Petersburg State Technical University, Russia ;<\/p>\n

TEMPORAL CHANGES IN POSITION OF SEGMENTATION GENE EXPRESSION DOMAINS IN DROSOPHILA EARLY EMBRYO<\/span><\/p>\n<\/td>\n

\n

11:30-12:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Reinitz J. B.<\/p>\n

Dept. Of Applied Math and Statistics, Stony Brook University, Stony Brook NY, USA<\/p>\n

BIOINFORMATIC ANALYSIS OF A MORPHOGENETIC FIELD IN DROSOPHILA<\/span><\/p>\n<\/td>\n

\n

12:00-12:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,2<\/span>\u00a0Spirov A.V.,\u00a03<\/sup>Holloway D.<\/span><\/h3>\n

1State University of New York at Stony Brook, Stony Brook NY,USA<\/p>\n

2The Sechenov Institute of Evolutionary Physiology and Biochemistry, St.Petersburg, Russia<\/p>\n

3Mathematics\/B.C.Institute of Technology\/Burnaby, B.C. Canada<\/p>\n

MEASUREMENTS OF PRECISION OF MOLECULAR MECHANISMS FOR EARLY DROSOPHILA EMBRYO SEGMENTATION<\/span><\/p>\n<\/td>\n

\n

12:30-13:00<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

Lunch 13:00-14:00<\/p>\n

14:00-17:00\u00a0<\/b>Evening Session<\/p>\n

SYSTEM COMPUTER BIOLOGY<\/p>\n

Chairpersons:<\/p>\n

Dr. M.Samsonova, St.Petersburg State Technical University, St.Petersburg, Russia<\/p>\n

Dr. J. Reinitz, Stony Brook University, Stony Brook, USA<\/p>\n\n\n\n\n\n\n\n\n\n
\n

Reports<\/span><\/p>\n<\/td>\n

\n

Timeline<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1,2<\/span>Ozoline O.N.<\/b>,\u00a02<\/sup>Fujita\u00a0<\/sup>N.,\u00a02,3<\/sup>Ishihama A.<\/span><\/p>\n

1Institute of Cell Biophysics, RAS, Pushchino, Moscow Region, Russia<\/p>\n

2National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan<\/p>\n

3Nippon Institute for Biological Science, Ome, Tokyo 198-0024, Japan<\/p>\n

Genome-wide expression profiling of Escherichia coli W3110: MICROARRAY AND STATISTIC ANALYSIS OF HEAT SHOCK REGULONS<\/span><\/p>\n<\/td>\n

\n

14:00-14:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Leyfer D.,<\/span><\/b>\u00a0Funari V., Berwick R., Haverty P., Frith M., Tolan D.<\/span><\/p>\n

Boston University, Boston, USA<\/p>\n

A NOVEL ALGORITHM FOR IN-SILICO EST EXPRESSION PROFILING<\/span><\/p>\n<\/td>\n

\n

14:30-15:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Milanesi L<\/span><\/b>., Rizzi R..<\/span><\/p>\n

Institute of Biomedical Technology CNR-ITB, Milan, Italy<\/p>\n

MICROARRAY IMAGING DATA READER SPOTVIEW<\/span><\/p>\n<\/td>\n

\n

15:00-15:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Coffee-break<\/span><\/b><\/p>\n<\/td>\n

\n

15:30-16:00<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

1<\/span>Likhoshvai V.A<\/b>.,\u00a01<\/sup>Matushkin Yu.G.,\u00a02<\/sup>\u00a0Fadeev S.I.2,\u00a03<\/sup>Klishevich M.A.,\u00a03<\/sup>Vernikovskaya E.V.,\u00a03<\/sup>Purtov A.V.,\u00a03<\/sup>Osokina V.A.
\n1<\/sup>\u00a0Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0Mathematical Institute of SB RAS, Novosibirsk, Russia
\n3<\/sup>Novosibirsk State University, Novosibirsk, Russia
\nON GLOBAL REGIMES OF A GENE NETWORK FUNCTIONING<\/span><\/p>\n<\/td>\n

\n

16:00-16:30<\/span><\/p>\n<\/td>\n<\/tr>\n

\n

Galimzyanov A.V.,<\/span><\/b>\u00a0Tchuraev R.N.<\/span><\/p>\n

Institute of Biology, Ufa Research Center, Russian Academy of Sciences, Ufa, Russia<\/p>\n

STRUCTURAL STABILITY OF\u00a0DROSOPHILA\u00a0<\/em>CONTROL GENE SUBNETWORK: COMPUTER EXPERIMENTS, QUANTITATIVE AND QUALITATIVE EVALUATION<\/span><\/p>\n<\/td>\n

\n

16:30-17:00<\/span><\/p>\n<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

17:00-17:30\u00a0<\/b>Closing Ceremony; Comments of Chairpersons<\/p>\n

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The Conference Sessions will be held in the Small Conference Hall and in Music Salon (room \u2116220) of the House of Scientists Participants are welcome to pass their demonstration material to the room \u2116 200 of the House of Scientists … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":13,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2002\/en\/wp-json\/wp\/v2\/pages\/42"}],"collection":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2002\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2002\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/bgrs2002\/en\/wp-json\/wp\/v2\/users\/13"}],"replies":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/bgrs2002\/en\/wp-json\/wp\/v2\/comments?post=42"}],"version-history":[{"count":3,"href":"https:\/\/conf.icgbio.ru\/bgrs2002\/en\/wp-json\/wp\/v2\/pages\/42\/revisions"}],"predecessor-version":[{"id":112,"href":"https:\/\/conf.icgbio.ru\/bgrs2002\/en\/wp-json\/wp\/v2\/pages\/42\/revisions\/112"}],"wp:attachment":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2002\/en\/wp-json\/wp\/v2\/media?parent=42"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}