{"id":98,"date":"2021-09-23T11:56:11","date_gmt":"2021-09-23T04:56:11","guid":{"rendered":"https:\/\/conf.icgbio.ru\/bgrs2004\/?page_id=98"},"modified":"2023-09-04T12:17:07","modified_gmt":"2023-09-04T05:17:07","slug":"program-3","status":"publish","type":"page","link":"https:\/\/conf.icgbio.ru\/bgrs2004\/en\/program-3\/","title":{"rendered":"Conference program"},"content":{"rendered":"

THE\u00a0Conference program (pdf)<\/a>: A PRELIMINARY VERSION<\/big><\/strong><\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n
July 24:<\/td>\nArrival<\/td>\n<\/tr>\n
July 25:<\/td>\nRegistration from 10:00
\nOpening Ceremony at 14:00.<\/td>\n<\/tr>\n
A preliminary working schedule by sections:<\/td>\n<\/tr>\n
July 25 – 26:<\/td>\nCOMPUTATIONAL STRUCTURAL AND FUNCTIONAL GENOMICS;<\/td>\n<\/tr>\n
July 27:<\/td>\nCOMPUTATIONAL STRUCTURAL AND FUNCTIONAL PROTEOMICS;<\/td>\n<\/tr>\n
July 28:<\/td>\nPOSTER SESSION;<\/td>\n<\/tr>\n
July 29:<\/td>\nCOMPUTATIONAL EVOLUTIONARY BIOLOGY;
\nNEW APPROACHES TO ANALYSIS OF BIOMOLECULAR DATA AND PROCESSES<\/td>\n<\/tr>\n
July 30:<\/td>\nCOMPUTATIONAL SYSTEM BIOLOGY<\/td>\n<\/tr>\n
<\/td>\n<\/td>\n<\/tr>\n
July 28:<\/td>\nINTAS-FP6 Workshop on “EU-NIS Partnering in Bioinformatics”<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

COMPUTATIONAL STRUCTURAL AND FUNCTIONAL GENOMICS<\/b><\/big><\/p>\n

ORAL REPORTS<\/b><\/p>\n

Abnizova I., te Boekhorts R., Gilks W.
\nMRC-BSU Cambridge, University of Hertfordshire Hatfield, UK
\nSOME WAYS TO INFER A DNA FUNCTION FROM THE SEQUENCE INFORMATION<\/p>\n

1<\/sup>Alexeevski A.V.,\u00a01<\/sup>Lukina E.N.,\u00a02<\/sup>Salnikov A.N.,\u00a01<\/sup>Spirin S.A.
\n1<\/sup>Belozersky Institute, Moscow State University, Moscow, Russia.
\n2<\/sup>Department of Computational Mathematics and Cybernetic, Moscow State University, Moscow, Russia
\nDATABASE OF LONG TERMINAL REPEATS IN HUMAN GENOME: STRUCTURE AND SYNCHRONIZATION WITH MAIN GENOME ARCHIVES<\/p>\n

1<\/sup>Astakhova T.V,\u00a01<\/sup>Petrova S.V,\u00a02<\/sup>Tsitovich I.I.,\u00a01<\/sup>Roytberg M.A.
\n1<\/sup>Institute of Mathematical Problems in Biology RAS, Puschino, Russia
\n2<\/sup>Institute of Information Transmission Problems RAS, Moscow, Russia
\nRECOGNITION OF CODING REGIONS IN GENOME ALIGNMENT<\/p>\n

Borlak J.T.
\nFraunhofer Institute of Toxicology and Experimental Medicine, Hannover, Germany
\nTHE CHALLENGE OF OMICS SCIENCES: \\”TURNING DATA INTO KNOWLEDGE\\”<\/p>\n

Bucher Ph.
\nSwiss Institute of Bioinformatics, Epalinges s\/Lausann, Switzerland
\nMODELLING TRANSCRIPTION FACTOR BINDING SITES WITH HIGH-THROUGHPUT SELEX DATA<\/p>\n

1<\/sup>Brahmachari S. K.,\u00a01<\/sup>Grover D,\u00a02<\/sup>Majumder P.P,\u00a01<\/sup>Mukerji M.
\n1<\/sup>Institute of Genomics and Integrative Biology, CSIR, Delhi, India.
\n2<\/sup>Anthropology and Human Genetics Unit, Indian Statistical Institute, Kolkata 700 108, India
\nNON-RANDOM DISTRIBUTION OF ALU ELEMENTS IN HUMAN: NOVEL INSIGHTS FROM ANALYSIS OF THE COMPLETE GENOME<\/p>\n

1<\/sup>Brok-Volchanski A.S.,\u00a01<\/sup>Purtov Yu.A.,\u00a01<\/sup>Lukyanov V.I.,\u00a01<\/sup>Kostyanicina E.G.,
\n1<\/sup>Antipov S.S.,\u00a02<\/sup>Deev A.A.,\u00a01<\/sup>Ozoline O.N.
\n1<\/sup>Institute of Cell Biophysics RAS, Pushchino, Moscow region, Russia
\n2<\/sup>\u00a0Institute of Theoretical and Experimental Biophysics RAS, Pushchino, Moscow region, Russia
\nGENOME-WIDE MAPPING OF POTENTIALLY TRANSCRIBED REGIONS BY NEW PROMOTER-SEARCH ALGORITHM<\/p>\n

1<\/sup>Choi C.H.,\u00a02<\/sup>Kalosakas G.,\u00a02<\/sup>Rasmussen K.O.,\u00a02<\/sup>Bishop A.R.,\u00a01<\/sup>Usheva A.
\n1<\/sup>Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, MA, USA
\n2<\/sup>Los Alamos National Laboratory, Los Alamos, NM, USA
\nACCURATE PREDICTION OF DNA OPENING PROFILES BY PEYRARD-BISHOP NONLINEAR DYNAMIC SIMULATIONS<\/p>\n

Dadashev S.Ya., Grishaeva T.M., Bogdanov Yu. F.
\nN.I.Vavilov Institute of General Genetics RAS, Moscow, Russia
\nDEVELOPMENT OF A METHOD FOR IN SILICO IDENTIFICATION OF DNA SEQUENCES PARTICIPATING IN MEIOTIC CHROMOSOME SYNAPSIS AND RECOMBINATION<\/p>\n

Ignatieva E. V., Oshchepkov D.Yu., Levitsky V.G., Vasiluev G.V., Klimova N.V., Busygina T.V., Merkulova T.I. Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nCOMPARISON OF THE RESULTS OF SEARCH FOR THE SF- 1 BINDING SITES IN THE PROMOTER REGIONS OF THE STEROIDOGENIC GENES, USING THE SITEGA AND SITECON METHODS<\/p>\n

Kersey, P.J., Morris L., Faruque N., Kulikova, T., Whitfield E., Apweiler R.
\nEMBL Outstation, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, UK
\nGENOME REVIEWS: INTGERATED VIEWS OF COMPLETE GENOMES<\/p>\n

1<\/sup>Kochetov A.V.,\u00a02<\/sup>Sarai A.,\u00a01<\/sup>Kolchanov N.A.
\n1<\/sup>Institute of Cytology and Genetics, Novosibirsk, Russia
\n2<\/sup>Kyushu Institute of Technology, Dept. Biochemical Engineering and Science, Iizuka, Japan
\nTRANSLATIONAL POLYMORPHISM AS A POTENTIAL SOURCE OF EUKARYOTIC PROTEINS VARIETY<\/p>\n

Levitsky V.G., Proscura A.P., Podkolodnaya O.A., Ignatieva E.V., Ananko E.A.
\nInstitute of Cytology & Genetics SB RAS, Novosibirsk, Russia
\nNUCLEOSOME FORMATION POTENTIAL OF THE GENE REGULATORY REGIONS<\/p>\n

1<\/sup>Makeev V.J.,\u00a02<\/sup>Lifanov A.P, .3<\/sup>Nazina A.G,\u00a03<\/sup>Papatsenko D.A.
\n1<\/sup>Scientific Center “Genetika”, Moscow, Russia.
\n2<\/sup>Engelhardt Institute of Molecular Biology, Moscow, Russia
\n3<\/sup>Department of Biology, New York University, New York, USA
\nDISTANCE PREFERENCES IN DISTRIBUTION OF BINDING MOTIFS AND HIERARCHICAL LEVELS IN ORGANIZATION OF TRANSCRIPTION REGULATORY INFORMATION<\/p>\n

1<\/sup>Makunin I.V.,\u00a01<\/sup>Stephen S,\u00a01<\/sup>Pheasant M.,\u00a02<\/sup>Bejerano G.,\u00a02<\/sup>Kent J.W.,\u00a03<\/sup>Haussler H.,\u00a01<\/sup>Mattick J.S.
\n1<\/sup>ARC Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Brisbane, Australia
\n2<\/sup>Department of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA, USA
\n3<\/sup>Howard Hughes Medical Institute, University of California Santa Cruz, Santa Cruz, CA, USA
\nEXTREMELY CONSERVED NON-CODING SEQUENCES IN VERTEBRATE GENOMES<\/p>\n

1<\/sup>Orlov Yu.L.,\u00a02<\/sup>Potapov V.N.,\u00a01<\/sup>Poplavsky A.S.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia
\nCOMPUTER ANALYSIS OF GENOMIC SEQUENCE COMPLEXITY: NEW APPLICATIONS<\/p>\n

1<\/sup>Sarai A.,\u00a01<\/sup>Ahmad S. ,\u00a02<\/sup>Gromiha M.M.,\u00a03<\/sup>Kono H.
\n1<\/sup>Dept. Bioscience & Bioinformatics, Kyushu Institute of Technology, Iizuka, Japan
\n2<\/sup>Computational Biology Research Center, AIST, Tokyo, Japan
\n3<\/sup>Neutron Science Research Center and Center for Promotion of Computational Science and Engineering Japan Atomic Energy Research Institute, Kyoto, Japan
\nGENOME-SCALE PREDICTION OF TRANSCRIPTION FACTORS AND THEIR TARGETS<\/p>\n

Vorobjev Y. N.
\nInstitute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk, Russia
\nMODELING OF CONTEXT-DEPENDENT CONFORMATIONAL PARAMETERS OF DNA DUPLEXES<\/p>\n

Xia X.
\nDepartment of Biology, University of Ottawa, Ottawa, Canada
\nA PECULIAR CODON USAGE PATTERN REVEALED AFTER REMOVING THE EFFECT OF DNA METHYLATION<\/p>\n

POSTER PRESENTATIONS<\/b><\/p>\n

1<\/sup>Albini G.,\u00a01<\/sup>Chetouani F.,\u00a01<\/sup>Rouille S.,\u00a01<\/sup>Karsenty E.,\u00a02<\/sup>Thomas B.,\u00a01<\/sup>Legeai F.,\u00a01<\/sup>Samson D.,\u00a05<\/sup>Pereira L.,\u00a03<\/sup>Arcade A.,\u00a03<\/sup>Joets J.,\u00a02<\/sup>Scala D.,\u00a05<\/sup>Viara E.,\u00a04<\/sup>Barillot E.,\u00a01<\/sup>Duclert A.
\n1<\/sup>\u00a0GenoplanteInfo, Unite de Recherche Genomique-Info, INRA, EVRY, France
\n2<\/sup>\u00a0RhoBioInf, Evry Cedex, France
\n3<\/sup>\u00a0INRA, Ferme du Moulon, Gif-sur-Yvette, France
\n4<\/sup>\u00a0Institut Curie, Paris, France
\n5<\/sup>\u00a0SYSRA, EVRY, France
\nGpiMap, AN ENVIRONMENT FOR GENETIC\/PHYSICAL MAP DATA MANAGEMENT, VISUALIZATION AND COMPARATIVE ANALYSIS<\/p>\n

1<\/sup>Boeva V.A.,\u00a02<\/sup>Regnier M.,\u00a03<\/sup>Makeev V.J.
\n1<\/sup>Moscow State University, Moscow, Russia
\n2<\/sup>INRIA Rocquencourt, Le Chesnay, France
\n3<\/sup>State Center GosNIIGenetika, Moscow, Russia
\nALGORITHM FOR SEARCHING FOR HIGHLY DIVERGENT TANDEM REPEATS IN DNA SEQUENCES, STATISTICAL TESTS, AND BIOLOGILAL APPLICATION IN DROSOPHILA MELANOGASTER GENOME<\/p>\n

1<\/sup>Denisov S.V.,\u00a01,2,3<\/sup>Gelfand M.S.
\n1<\/sup>M.V. Lomonosov Moscow State University, Moscow, Russia
\n2<\/sup>Institute for Information Transmission Problems RAS, Moscow, Russia
\n3<\/sup>State Scientific Center GosNIIGenetika, Moscow, Russia
\nCONSERVATION OF ALTERNATIVE SPLICING REGULATORY SIGNAL UGCAUG IN MOUSE AND HUMAN GENOMES<\/p>\n

Frenkel F.E., Chaley M.B., Korotkov E.V., Skryabin K.G.
\nCentre “Bioengineering” RAS, Moscow, Russia
\nINFORMATIONAL ASPECTS OF THE LATENT TRIPLET PERIODICITY ANALYSIS<\/p>\n

1<\/sup>Fursov M.Yu.,\u00a01<\/sup>Baksheyev D.G.,\u00a01<\/sup>Rodionov K.V.,\u00a01<\/sup>Golubitskii A.A.,
\n2<\/sup>Saraev D.V.,\u00a02<\/sup>Denisov S.I.,\u00a02<\/sup>Blinov V.M.
\n1<\/sup>Novosibirsk Center of Information Technologies “UniPro”, Novosibirsk, Russia
\n2<\/sup>State Research Center of Virology and Biotechnology “VECTOR”, Koltsovo, Russia
\nA PRACTICAL METHOD FOR MAXIMUM EXACT MATCHES IN LARGE GENOMES<\/p>\n

Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Stepanenko I.L., Khlebodarova T.M., Merkulova T.I., Podkolodny N.L., Grigorovich D.A., Poplavsky A.S., Naumochkin A.N., Pozdnyakov M.A., Romashchenko A.G., Kolchanov N.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nTRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): ITS STATUS IN 2004<\/p>\n

Ignatieva E. V., Levitsky V.G., Vasiliev G.V., Klimova N.V., Busygina, T.V., Merkulova T.I. Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nDISTRIBUTION OF THE SF-1 SITES IN THE GENOMIC SEQUENCES PREDICTED BY THE SITEGA METHOD AND THEIR EXPERIMENTAL VERIFICATION<\/p>\n

Ishchukov I.M., Likhoshvai V.A., Matushkin Yu.G.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nA NEW ALGORITHM FOR RECOGNIZING THE OPERON STRUCTURE OF PROKARYOTES<\/p>\n

Kamzolova S. G., Sorokin A. A., Dzhelyadin T. R., Osypov A. A., Beskaravainy P. M.
\nInstitute of Cell Biophysics of RAS, Pushchino Moscow region, Russia
\nANALYSIS OF OLIGONUCLEOTIDE COMPOSITION IN DNA OF E. COLI GENOME AND PROMOTER SITES<\/p>\n

Kamzolova S.G., Sorokin A.A., Dzhelyadin T.R., Beskaravainy P.M., Osypov A.A.
\nInstitute of Cell Biophysics of RAS, Pushchino, Moscow region, Russia
\nELECTROSTATIC PROPERTIES OF E.COLI GENOME DNA<\/p>\n

Katokhin A.V., Levitsky V.G., Oshchepkov D.Yu., Poplavsky A.S., Furman D. P.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nANALYSIS OF NUCLEOSOME FORMATION POTENTIAL AND CONFORMATIONAL PROPERTIES OF HUMAN J1-J2 TYPE ALPHA SATELLITE DNA<\/p>\n

1<\/sup>Kazakov A.E.,\u00a02<\/sup>Kalinina O.V.,\u00a03<\/sup>Permina E.A.,\u00a01,2,3<\/sup>Gelfand M.S.
\n1<\/sup>Institute for Information Transmission Problems RAS, Moscow, Russia
\n2<\/sup>Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia
\n3<\/sup>State Scientific Center GosNIIGenetika, Moscow, Russia
\nBACTERIAL METAL RESISTANCE SYSTEMS REGULATED BY TRANSCRIPTION REGULATORS OF THE MERR FAMILY<\/p>\n

Khlebodarova T.M., Podkolodnaya O.A., Ananko E.A., Stepanenko I.L., Ignatieva E.V., Podkolodny N.L., Pozdnyakov M.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nTRRD_ARTSITE DATABASE: STRUCTURES OF TRANSCRIPTION FACTOR BINDING SITES<\/p>\n

Khlebodarova T.M., Podkolodnaya O.A., Ananko E.A., Ignatieva E.V.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nCOMPARISON OF THE STRUCTURES OF IN VITRO SELECTED AND NATURAL BINDING SITES OF TRANSCRIPOTION FACTORS<\/p>\n

1,2<\/sup>Kondrakhin Yu.V.,\u00a01<\/sup>Poplavsky A.S.,\u00a01<\/sup>Podkolodnaya O.A.,\u00a01<\/sup>Ignatieva E.V.,\u00a01<\/sup>Ananko E.A.,\u00a01<\/sup>Khlebodarova T.M.,\u00a01<\/sup>Stepanenko I.L.,\u00a01<\/sup>Podkolodny N.L.\u00a01<\/sup>\u00a0Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nTFBSANALYZER: A WEB TOOLKIT FOR ANALYSIS AND PREDICTION OF TRANSCRIPTION FACTOR BINDING SITES<\/p>\n

1<\/sup>Konstantinov Yu.M. ,\u00a02<\/sup>Poplavsky A.S.
\n1<\/sup>Siberian Institute of Plant Physiology and Biochemistry SB RAS, Irkutsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nANALYSIS OF PLANT MITOCHONDRIAL GENOME ORGANIZATION: CHARACTERISTICS OF REPEATS AND SEQUENCE COMPLEXITY<\/p>\n

1<\/sup>Kosmodemiansky I.A.,\u00a01,2,3<\/sup>Gelfand M.S.,\u00a01,3<\/sup>Mironov A.A.
\n1<\/sup>Department of Bioengineering and Bioinformatics , Moscow State University, Moscow, Russia
\n2<\/sup>Institute for Information Transmission Problems RAS, Moscow, Russia
\n3<\/sup>State Scientific Center GosNIIGenetika, Moscow, Russia
\nMANUAL CURATION OF EST LIBRARIES BY TISSUE SPECIFICITY AND CELL ORIGIN<\/p>\n

Leontiev L.A., Shirshin M.A., Lyubetsky V.A.
\nInstitute for Information Transmission Problems RAS, Moscow, Russia
\nDETECTION OF CLASSICAL ATTENUATION IN BACTERIAL GENOMES<\/p>\n

Levitsky V.G., Katokhin A.V., Furman D.P.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nANALYSIS OF PERIODICITIES IN THE DINUCLEOTIDE CONTEXT OF NUCLEOSOMAL DNA USING THE METHOD PHASE<\/p>\n

Levitsky V.G., Ignatieva E.V., Busygina T.V., Merkulova T.I.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nANALYSIS OF THE CONTEXT FEATURES OF SF-1 BINDING SITE AND DEVELOPMENT OF A CRITERION FOR SF-1<\/sup>\u00a0REGULATED GENE RECOGNITION BY THE SITEGA METHOD<\/p>\n\n\n\n
1<\/sup>\u00a0Pichueva A.G.<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

1<\/sup>\u00a0LevitskyV.G.,\u00a01<\/sup>\u00a0Kochetov A.V.,\u00a02<\/sup>Milanesi L.<\/p>\n

1<\/sup>\u00a0Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0Istitute of Advanced Biomedical Tecnologies, CNR, Milan, Italy
\nDNA NUCLEOSOME ORGANIZATION OF THE FUNCTIONAL GENES REGIONS AND ITS RELATION TO GENE EXPRESSION LEVEL<\/p>\n

Leyfer D., Weng Z.
\nBoston University, Boston, USA
\nGENOME-WIDE IDENTIFICATION OF TRANSCRIPTIONAL MODULES BY CIS-ELEMENT AND EXPRESSION CLUSTERING<\/p>\n

Lyubetsky V.A., *Seliverstov A. V.
\nInstitute for Information Transmission Problems RAS, Moscow, Russia
\nAMINO ACID BIOSYNTHESIS ATTENUATION IN BACTERIA<\/p>\n

Mishchenko E.L., Kondrahin Yu.V., Podkolodnaya O.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n\u0421OMPUTER ANALYSIS AND PREDICTION OF POTENTIAL IRON-RESPONSIVE ELEMENTS IN 5′ AND 3′ UTR OF EUKARYOTE GENES TRANSCRIPTS<\/p>\n

Oparina N., Rychkov A., Mashkova T.
\nEngelhardt Institute of Molecular Biology RAS, Moscow, Russia
\nTHE NEW APPROACH OF BOTH NEW AND OLD SEGMENTAL DUPLICATIONS SEARCH: REPETITIVE DNA AS A MOLECULAR ARCHAEOLOGY TOOL<\/p>\n

Orlov Yu.L., Levitsky V.G.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nNUCLEOSOME POSITIONING SIGNAL ANALYSIS<\/p>\n

1<\/sup>Orlov Yu.L.,\u00a01<\/sup>Proscura A.L.,\u00a02<\/sup>Vityaev E.E.,\u00a03<\/sup>\u00a0Arrigo P.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia
\n3<\/sup>ISMAC, Genova, Italy
\nCONTEXT FEATURES OF TRANSCRIPTION FACTOR BINDING SITE SEQUENCES: RELATION TO DNA-BINDING DOMAIN CLASSIFICATION<\/p>\n

Oshchepkov D.Yu., Grigorovich D.A,. Ignatieva E.V., Khlebodarova T.M.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nSITECON: A TOOL FOR DETECTING CONSERVATIVE CONFORMATIONAL AND PHYSICOCHEMICAL PROPERTIES IN TRANSCRIPTION FACTOR BINDING SITES ALIGNMENTS AND FOR SITE RECOGNITION<\/p>\n

Ponomarenko M.P., Ponomarenko J.V.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nA DATABASE ON DNA SEQUENCE\/ACTIVITY RELATIONSHIPS: APPLICATION TO PHYLOGENETIC FOOTPRINTING<\/p>\n

Proskura A.L., Oshchepkov D.Yu., Pozdnyakov M.A., Ignatieva E.V.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nSREBP BINDING SITES: CONTEXT FEATURES AND ANALYSIS OF GENOME DISTRIBUTION BY THE SITECON METHOD<\/p>\n

1<\/sup>Samsonova A.,\u00a02<\/sup>Dieterich C.,\u00a02<\/sup>Vingron M.,\u00a01<\/sup>Brazma A.
\n1<\/sup>EMBL-EBI, Wellcome Trust Genome Campus, Cambridge, UK
\n2<\/sup>\u00a0Max-Planck-Institute for Molecular Genetics, Berlin, Germany
\nSEARCH FOR REGULATORY MOTIFS IN DROSOPHILA MELANOGASTER GENOME<\/p>\n

1<\/sup>Saraev D.V.,\u00a01<\/sup>Dzhekshenbaeva G.K.,\u00a02<\/sup>Baksheyev D.G.,\u00a02<\/sup>Rodionov K.V.,\u00a02<\/sup>Golubitskii A.A.,\u00a02<\/sup>Fursov M.Yu.,\u00a02<\/sup>Golosov I.S.,\u00a03<\/sup>Kisselev L.L.,\u00a01<\/sup>Blinov V.M.
\n1<\/sup>State Research Center of Virology and Biotechnology “Vector”, Koltsovo, Russia
\n2<\/sup>Novosibirsk Center of Information Technologies “UniPro”, Novosibirsk, Russia
\n3<\/sup>Engelhardt Institute of Molecular Biology RAS, Moscow, Russia
\nLONG SEGMENTAL REPEATS IN HUMAN GENOME: DENSITY, DISTRIBUTION, STRUCTURE<\/p>\n

1<\/sup>Stavrovskaya E.D.,\u00a02<\/sup>,\u00a03<\/sup>Mironov A.A.
\n1<\/sup>Department of Information Technologies, Peoples’ Friendship University of Russia, Moscow, Russia
\n2<\/sup>State Scientific Center GosNIIGenetika, Moscow, Russia.
\n3<\/sup>Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia
\nBINARY TREE FOR CLUSTERING OF REGULATORY SIGNALS<\/p>\n

1,2<\/sup>Titov I.I.,\u00a02<\/sup>Vorobiev D.G. ,\u00a01<\/sup>Palyanov A.Yu.
\n1<\/sup>Novosibirsk State University, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nWEB-SERVER GARNA FOR RNA STRUCTURE ANALYSIS: ITS STATE IN 2004<\/p>\n

1<\/sup>Vasyunina E.A.,\u00a01,2<\/sup>Rogozin I.B.,\u00a01<\/sup>Sinitsina O.I.,\u00a01<\/sup>Plaksina A.S.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA
\nTHEORETICAL AND EXPERIMENTAL STUDY OF MUTATIONS INDUCED BY 8-OXOGUANINE<\/p>\n

1<\/sup>Vishnevsky O.V.,\u00a01<\/sup>Ignatieva E.V.,\u00a02<\/sup>Arrigo P.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>ISMAC, Genova, Italy
\nTHE ARGO_SITES: AN ANALYSIS AND RECOGNITION OF THE TRANSCRIPTION FACTOR BINDING SITES BASED ON SETS OF DEGENERATE OLIGONUCLEOTIDE MOTIFS<\/p>\n

Vitreschak A., Noe L., Kucherov G.
\nINRIA-Lorraine\/LORIA, Villers-les-Nancy, France
\nCOMPUTER ANALYSIS OF MULTIPLE REPEATS IN BACTERIA<\/p>\n

1,2<\/sup>Walker N.J,\u00a01<\/sup>Sharrocks A.D,\u00a01,2<\/sup>Attwood T. K.
\n1<\/sup>School of Biological Sciences, University of Manchester, UK
\n2<\/sup>Department of Computer Science, University of Manchester, UK
\nUSE OF AN INTEGRATED RULE SYSTEM FOR IDENTIFICATION OF THE TRANSCRIPTION FACTOR BINDING SITES MCM 1 AND FKH 2 IN S.CEREVISIAE<\/p>\n

Yu R., Tan E.C.
\nSchool of Computer Engineering, Nanyang Technological University, Singapore, Singapore
\nAPPLICATION OF TIME-FREQUENCY ANALYSIS IN EXON CLASSIFICATION<\/p>\n

COMPUTER DEMONSTRATIONS<\/b><\/p>\n

Golubitskii A.A.
\nNovosibirsk Center of Information Technologies “UniPro”, Novosibirsk, Russia
\nA PRACTICAL METHOD FOR MAXIMUM EXACT MATCHES IN LARGE GENOMES: UniPro Genome Browser – tool for visual analysis and annotation of large genomes<\/p>\n

Rodionov K.V.
\nNovosibirsk Center of Information Technologies “UniPro”, Novosibirsk, Russia
\nA PRACTICAL METHOD FOR MAXIMUM EXACT MATCHES IN LARGE GENOMES: UniPro DPview – a tool for finding and analyzing matches between genomes<\/p>\n

Xia X.
\nDepartment of Biology, University of Ottawa, Ottawa, Canada
\nDAMBE: AN INTEGRATED ENVIRONMENT FOR DATA ANALYSIS IN MOLECULAR BIOLOGY AND EVOLUTION<\/p>\n

1<\/sup>Zykovich A.S.,\u00a02<\/sup>Axenovich T.I.
\n1<\/sup>Novosibirsk State University, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nDEVELOPMENT OF METHOD FOR IN SILICO MAPPING OF QUANTITATIVE TRAIT LOCI<\/p>\n

COMPUTATIONAL STRUCTURAL AND FUNCTIONAL PROTEOMICS<\/b><\/big><\/p>\n

ORAL REPORTS<\/b><\/p>\n

1<\/sup>,\u00a02<\/sup>Chekmarev S. F.,\u00a02<\/sup>Palyanov A.Yu.,\u00a03<\/sup>Krivov S. V.,\u00a02<\/sup>,\u00a04<\/sup>Titov I.I.,\u00a03,5<\/sup>Karplus M.
\n1<\/sup>Institute of Thermophysics SB RAS, Novosibirsk, Russia
\n2<\/sup>Novosibirsk State University, Novosibirsk, Russia
\n3<\/sup>Laboratoire de Chimie Biophysique, ISIS, Universite Louis Pasteur, Strasbourg, France
\n4<\/sup>Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia
\n5<\/sup>Department of Chemistry & Chemical Biology, Harvard University, Cambridge, MA, USA KINETICS OF PROTEIN FOLDING AND MISFOLDING: LATTICE SIMULATIONS AND ANALYTIC MODEL<\/p>\n

Efremov R.G. Volynsky P.E., Nolde D.E., Vereshaga Y.A., Konshina A.G., Simakov N.A., Arseniev A.S.
\nShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia
\nMEMBRANE PROTEINS: THE NEW INSIGHTS via COMPUTATIONAL EXPERIMENTS<\/p>\n

1<\/sup>Ivanisenko V.A.,\u00a02<\/sup>Pintus S.S.,\u00a02<\/sup>Krestyanova M.A.,\u00a02<\/sup>\u00a0DemenkovP.S.,\u00a02<\/sup>Znobisheva E.K.,\u00a02<\/sup>Ivanov E.E.,\u00a01<\/sup>Grigorovich D.A.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Novosibirsk State University, Novosibirsk, Russia
\nPDBSITE, PDBLIGAND AND PDBSITESCAN: A COMPUTATIONAL WORKBENCH FOR THE RECOGNITION OF THE STRUCTURAL AND FUNCTIONAL DETERMINANTS IN PROTEIN TERTIARY STRUCTURES COMBINED WITH PROTEIN DRAFT DOCKING<\/p>\n

1<\/sup>Kalinina O.V.,\u00a01<\/sup>Novichkov P.S.,\u00a01,2<\/sup>Mironov A.A.,\u00a02,3<\/sup>Gelfand M.S.,\u00a01<\/sup>Rakhmaninova A.B.
\n1<\/sup>\u00a0Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia.\u00a02<\/sup>\u00a0State Scientific Center GosNIIGenetika, Moscow, Russia.
\n3<\/sup>\u00a0Institute for Problems of Information Transmission RAS, Moscow, Russia.
\nSDPPRED: A METHOD FOR PREDICTION OF AMINO ACID RESIDUES THAT DETERMINE DIFFERENCES IN FUNCTIONAL SPECIFICITY OF HOMOLOGOUS PROTEINS AND ITS APPLICATION TO THE MIP FAMILY OF MEMBRANE TRANSPORTERS<\/p>\n

2<\/sup>Ko, J.,\u00a01<\/sup>Andre, P.,\u00a01<\/sup>Murga, L.F.,\u00a01<\/sup>Ondrechen, M.J.
\n1<\/sup>Department of Chemistry and Chemical Biology and Institute for Complex Scientific Software, Northeastern University, Boston, Massachusetts, USA
\n2<\/sup>NSF-ROA awardee on leave from Department of Chemistry, Indiana University of Pennsylvania, Indiana, Pennsylvania , USA
\nSTATISTICAL METRICS FOR PROTEIN ACTIVE SITE PREDICTION WITH THEMATICS<\/p>\n

1<\/sup>Kuznetsov V.A.,\u00a02<\/sup>Pickalov V.V,\u00a03<\/sup>\u00a0Knott G.D.,\u00a04<\/sup>Kanapin A.A.
\n1<\/sup>CIT\/NIH & SRA International, Inc. Bethesda, MD, USA
\n2<\/sup>Institute of Theoretical and Applied Mechanics SB RAS, Novosibirsk, Russia
\n3<\/sup>Civilized Software, Inc., Silver Spring, MD, USA
\n4<\/sup>EMBL-EBI Wellcome Trust Genome Campus, Hinxton, UK
\nANALYSIS OF PROTEOME COMPEXITY BASED ON COUNTING DOMAIN-TO-PROTEIN LINKS<\/p>\n

1<\/sup>Milanesi L.,1<\/sup>Merelli I.,\u00a02<\/sup>Pattini L.,\u00a02<\/sup>Cerutti S.
\n1<\/sup>Institute of Advanced Biomedical Technologies, CNR, Segrate (Milan), Italy.
\n2<\/sup>Department of Biomedical Engineering, Polytechnic University of Milan, Milan, Italy.
\nREPRESENTATION AND MODELLING OF PROTEIN SURFACE DETERMINANTS<\/p>\n

Rahmanov S.V., Makeev V.Yu.
\nLaboratory of Bioinformatics, GosNIIGenetika, Moscow, Russia
\nCONSTRUCTING DETAILED KNOWLEDGE-BASED ATOMIC POTENTIALS FOR WATER IN PROTEINS<\/p>\n

Ramachandran S. Jain P., Sachdeva G.
\nG.N. Ramachandran Knowledge Center for Genome Informatics, Institute of Genomics and Integrative Biology, Delhi, India
\nMINING FROM COMPLETE PROTEOMES TO IDENTIFY ADHESINS AND ADHESIN-LIKE PROTEINS: A RAPID AID TO EXPERIMENTAL RESEARCHERS<\/p>\n

Ramensky V.E., Tumanyan V.G.
\nEngelhardt Institute of Molecular Biology of Russian Academy of Sciences, Moscow, Russia
\nMUTANT PROTEIN STRUCTURES REVEAL MOLECULAR MECHANISMS OF INHERITED DISEASES<\/p>\n

Shaitan K.V.
\nM.V. Lomonosov Moscow State University, Moscow, Russia
\nMOLECULAR DYNAMICS SIMULATIONS FOR LARGE SERIES OF PEPTIDES (COMPARATIVE STUDY)<\/p>\n

Surya pavan Y. , Mitra C.K.
\nDepartment of Biochemistry, University of Hyderabad, Hyderabad , India
\nA MARKOV MODEL FOR PROTEIN SEQUENCES<\/p>\n

Turutina V.P., Korotkov E.V., Laskin A.A.
\nBioengineering Center RAS, Moscow, Russia
\nLATENT PERIODICITY OF THE PROTEIN FAMILIES<\/p>\n

POSTER PRESENTATIONS<\/b><\/p>\n

Afonnikov D.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nNovosibirsk State University, Novosibirsk, Russia
\nPREDICTING CONTACT NUMBERS OF AMINO ACID RESIDUES USING A NEURAL NETWORK MODEL<\/p>\n

Amirova S.R., Machavariani M., Filatov I.V., Milchevsky Ju.V., Esipova N.G., Tumanyan V.G.
\nEngelhardt Institute of Molecular Biology RAS, Moscow, Russia
\nCOMBINED APPROACH TO PROTEIN SECONDARY STRUCTURE PREDICTION<\/p>\n

Andrianov A.M.
\nInstitute of Bioorganic Chemistry of National Academy of Sciences, Minsk, Republic of Belarus
\nSTRUCTURE AND POLYMORPHISM OF THE HIV-1 PRINCIPAL NEUTRALIZING EPITOPE<\/p>\n

1<\/sup>Antyufeev V.S.,\u00a02<\/sup>Nikolaev S.V.
\n1<\/sup>Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nA FAST PROCEDURE FOR MODELING OF PROTEASOMAL PROTEIN DEGRADATION IN VITRO<\/p>\n

Bachinsky A.G., Solovyev V.V.
\nSoftberry Inc., Mount Kisco, NY, USA
\nPermanent address: SRC VB “Vector”, Koltsovo, Novosibirsk region, Russsia
\nNEW APPROACHES TO ANALYSIS OF PROTEIN STRUCTURE AND FUNCTION<\/p>\n

Belenikin M.S.
\nLomonosov Moscow State University, Department of Chemistry, Moscow, Russia
\nMOLECULAR MODELING AND COMPARATIVE ANALYSIS OF AMINO-TERMINAL DOMAIN OF NMDA IONOTROPIC GLUTAMATE RECEPTORS<\/p>\n

Chelobanov B.P.,\u00a01<\/sup>Ivanisenko V.A., Kharkova M.V., Laktionov P.P., Rykova E.Yu., Vlassov V.V
\nInstitute of Chemical Biology and Fundamental Medicine SB RAS, Russia
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nIDENTIFICATION AND ANALYSIS OF CELL SURFACE NUCLEIC ACIDS-BINDING PROTEINS<\/p>\n

Chumakov M.I., Burmatov A.V., Bogdanov V.I., Volohina I.V.
\nInstitute of Biochemistry and Physiology of Plants and Microorganisms RAS, Saratov, Russia
\nEXPERIMENTAL AND COMPUTER EVALUATION OF AGROBACTERIAL SST-DNA BINDING VIRE2<\/sup>\u00a0PROTEIN ABILITY TO INTERACT WITH LIPID MEMBRANES<\/p>\n

Ershova A.S.,\u00a01<\/sup>Alexeevski A.V.,\u00a01<\/sup>Spirin S.A., Karyagina A.S.
\nInstitute of Agricultural Biotechnology, Russian Academy of Agricultural Sciences Moscow, Russia;
\n1<\/sup>Belozersky Institute, Moscow State University, Moscow, Russia
\nCOMMON STRUCTURAL FEATURES OF HOMEODOMAINS AND HOMEODOMAIN-DNA COMPLEXES<\/p>\n

Filatov I.V., Milchevsky Ju.V., Esipova N.G., Tumanyan V.G.
\nEngelhardt Institute of Molecular Biology RAS, Moscow, Russia
\nCOMPUTATION OF THE THREE DIMESIONAL STRUCTURE OF THE HUMAN TYPE(III) COLLAGEN<\/p>\n

Gariev I.A., Uporov I.V., Varfolomeev S.D.
\nMoscow State University, Moscow, Russia
\nSEARCHING STRUCTURAL PROTEIN DATABASES FOR EZYMATIC ACTIVE SITES BY\u00a03<\/sup>D PATTERNS<\/p>\n

1<\/sup>Karasev V.A.,\u00a01<\/sup>Luchinin V.V,\u00a02<\/sup>\u00a0Stefanov V.E.
\n1<\/sup>Saint-Petersburgh State Electrotechnical University “LETI”, Saint-Petersburgh, Russia
\n2<\/sup>\u00a0Saint-Petersburgh State University, Saint-Petrsburgh, Russia
\nSYMMETRY AND SPATIAL STRUCTURE OF THE CANONICAL SET OF AMINO ACIDS<\/p>\n

Kolesov G, Mirny L.A.
\nHarvard-MIT Division of Health Sciences and Technology, MIT, Cambridge, USA
\nFROM PROTEIN SEQUENCE TO PROTEIN SPECIFICITY: COMPLETELY AUTOMATED DISCOVERY AND MAPPING OF SPECIFICITY DETERMINING RESIDUES<\/p>\n

1<\/sup>Kosinsky Yu.A.,\u00a01<\/sup>Nolde D.E.,\u00a02<\/sup>Tsivkovskii R.,\u00a01<\/sup>Arseniev A.S.,\u00a01<\/sup>Lutsenko S.,\u00a01<\/sup>Efremov R.G.
\n1<\/sup>M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia.
\n2<\/sup>Department of Biochemistry and Molecular Biology, Oregon Health and Science University, Portland OR, USA
\nMOLECULAR MODELING OF THE NUCLEOTIDE-BINDING DOMAIN OF THE WILSON’ DISEASE PROTEIN: THE ATP-BINDING SITE AND DOMAIN DYNAMICS<\/p>\n

Kuznetsov V.A.
\nCIT\/NIH & SRA International, Inc. Bethesda, MD, USA
\nVALIDATION OF RANDOM BIRTH-DEATH MODEL OF EVOLUTION OF PROTEOME COMPLEXITY<\/p>\n

1<\/sup>Litvinov I.I.,\u00a02<\/sup>Mironov A.A,\u00a03<\/sup>Finkelstein A.V.,\u00a01<\/sup>Roytberg M.A.
\n1<\/sup>Institute of Mathematical Problems in Biology RAS, Puschino, Russia
\n2<\/sup>Moscow State University, Department of Biotechnology and Bioinformatics, Moscow, Russia
\n3<\/sup>1<\/sup>Institute of Protein Research RAS, Puschino, Russia
\nINFORMATION ABOUT SECONDARY STRUCTURE IMPROVES QUALITY OF PROTEIN ALIGNMENT<\/p>\n

Naumoff D.G.
\nState Institute for Genetics and Selection of Industrial Microorganisms, Moscow, Russia
\nTHE ALPHA-GALACTOSIDASE SUPERFAMILY: SEQUENCE BASED CLASSIFICATION OF ALPHA-GALACTOSIDASES AND RELATED GLYCOSIDASES<\/p>\n

Nikolaev S.V., Afonnikov D.A..
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nINTER-SUBUNIT CONTACTS OF THE PROTEASOMAL ALPHA-SUBUNITS AS DETERMINANTS OF PARALOG GROUPS<\/p>\n

Nizolenko L. Ph., Bachinsky A. G., Yarygin A. A., Naumochkin A. N., Grigorovich D. A.
\nSRC “Vector”, Koltsovo, Novosibirsk, Russia.
\nPROTEIN FAMILY PATTERNS BANK PROF_PAT. CURRENT STATUS<\/p>\n

2<\/sup>Palyanov A.Yu.,\u00a03<\/sup>Krivov S. V.,\u00a02<\/sup>,\u00a04<\/sup>Titov I.I.,\u00a03,5<\/sup>Karplus M.,\u00a01<\/sup>,\u00a02<\/sup>Chekmarev S. F.
\n1<\/sup>Institute of Thermophysics SB RAS, Novosibirsk, Russia
\n2<\/sup>Novosibirsk State University, Novosibirsk, Russia
\n3<\/sup>Laboratoire de Chimie Biophysique, ISIS, Universite Louis Pasteur, Strasbourg, France
\n4<\/sup>Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia
\n5<\/sup>Department of Chemistry & Chemical Biology, Harvard University, Cambridge, MA, USA PROTEIN FOLDING AND MISFOLDING: A BBIFURCATION STUDY OF A LATTICE MODEL<\/p>\n

1<\/sup>Palyanov A.Yu.,\u00a01,2<\/sup>Titov I.I.
\n1<\/sup>Novosibirsk State University, Novosibirsk, Russia
\n2<\/sup>\u00a0Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia
\nSTRUCTURAL MEMORY OF A LATTICE PROTEIN<\/p>\n

1<\/sup>Perevalov D.S.,\u00a02<\/sup>Davydov O.M.,\u00a03<\/sup>Tatur S.V.,\u00a03<\/sup>Lenskiy S.V.
\n1<\/sup>Institute of Mathematics and Mechanics Urals Branch of RAS, Yekaterinburg, Russia
\n2<\/sup>Chelyabinsk State University, Chelyabinsk, Russia
\n3<\/sup>Urals State University, Yekaterinburg, Russia
\nON ENERGY DISTRIBUTION OF RANDOM WALKS WITH CONSTRAINTS AND GEOMETRICAL COMPLEXITY OF POLYMERS<\/p>\n

1<\/sup>Pintus S.S.,\u00a02<\/sup>Ivanisenko V.A.
\n1<\/sup>Novosibirsk State University, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nA MOLECULAR MECHANISM FOR THE STRUCTURE-FUNCTIONAL ALTERATIONS IN MUTANT FORMS OF HUMAN P5<\/sup>3<\/sup>\u00a0PROTEIN<\/p>\n

1,2<\/sup>Polyansky A.A,\u00a02<\/sup>Volynsky P.E,\u00a02<\/sup>Efremov R.G.
\n1<\/sup>Biological Department, M.V.Lomonosov Moscow State University, Moscow, Russia
\n2<\/sup>M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia
\nCOMPUTER SIMULATIONS OF ANIONIC UNSATURATED LIPID BILAYER: A BASE SYSTEM TO STUDY PEPTIDE-MEMBRANE INTERACTIONS<\/p>\n

1<\/sup>Ragulina L.E.,\u00a02<\/sup>Makeev V.Ju.,\u00a03<\/sup>Esipova N.G.,\u00a03<\/sup>Tumanyan V.G.,\u00a02<\/sup>Bogush V.G.,\u00a02<\/sup>Debabov V.G.,\u00a03<\/sup>Nikitin A.M.,3<\/sup>Vlasov P.K.
\n1<\/sup>Moscow Institute of Physics and Technology, Moscow, Russia
\n2<\/sup>State Scientific Center “GosNIIGenetika”, Moscow, Russia
\n3<\/sup>Engelhardt Institute of Molecular Biology RAS, Moscow, Russia
\nPERIODICAL PATTERNS IN SEQUENCES OF SPIDROINS 1 AND 2 AND SECONDARY STRUCTURE PREDICTION<\/p>\n

Sadovskaya N.S.
\nGosNIIGenetika, Moscow, Russia
\nBENCHMARKING OF TRANSMEMBRANE HELIX PREDICTION SERVERS<\/p>\n

Skarina T., Evdokimova E., Yakunin A., Khachatryan A., Pennycooke M., Guido V., Guthrie J., Xu X., Semesi A., Gu J., Kudritska M., Egorova O., Gorodichtchenskaia E., Yee A., Savchenko A., Arrowsmith C.H., Edwards A.M.
\nOntario Centre for Structural Proteomics, University of Toronto, University Health Network, Toronto, ON, Canada
\nSTRUCTURAL AND FUNCTIONAL ANALYSIS OF POORLY CHARACTERIZED PROTEIN FAMILIES AT THE ONTARIO CENTRE FOR STRUCTURAL PROTEOMICS<\/p>\n

1,2<\/sup>Tchugunov A.O.,\u00a03<\/sup>Chavatte P.,\u00a01<\/sup>Efremov R.G.
\n1<\/sup>\u00a0Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia
\n2<\/sup>\u00a0Department of Bioengineering, Biological Faculty, M.V. Lomonosov Moscow State University, Moscow, Russia
\n3<\/sup>\u00a0Faculte des Sciences Pharmaceutiques et Biologiques, Lille Cedex, France
\nMOLECULAR MODELING OF HUMAN MT1<\/sub>\u00a0AND MT2<\/sub>\u00a0MELATONIN RECEPTORS<\/p>\n

1,2<\/sup>Titov I.I.,\u00a02<\/sup>Vorobiev D.G.,\u00a01<\/sup>Palyanov A.Yu.
\n1<\/sup>Novosibirsk State University, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nWEB-SERVER GARNA FOR RNA STRUCTURE ANALYSIS: ITS STATE IN 2004<\/p>\n

1<\/sup>Varlamova E.S.,\u00a01,2<\/sup>Afonnikov D.A.
\n1<\/sup>Novosibirsk State University, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nIMPROVED PREDICTION OF PROTEIN CONTACT MAPS USING INFORMATION ON RESIDUE CONTACT NUMBERS<\/p>\n

COMPUTER DEMONSTRATION<\/b><\/p>\n

Gribkov M.A., Korotkova M.A.
\nMoscow Engineering-Physics Institute (State University), Moscow, Russia
\nA SYSTEM FOR COMPLEX ANALISYS OF PROTEIN MACROMOLECULES SPATIAL STRUSTURES<\/p>\n

COMPUTATIONAL EVOLUTIONARY BIOLOGY<\/b><\/big><\/p>\n

ORAL REPORTS<\/b><\/p>\n

1<\/sup>\u00a0Bazykin G.A., Ogurtsov A.Y.,\u00a02<\/sup>Kondrashov A.S.
\n1<\/sup>\u00a0Dept. of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA,
\n2<\/sup>\u00a0National Center for Biotechnology Information, NIH, Bethesda, Maryland, USA
\nCHANGE IN CPG CONTEXT IS A LEADING CAUSE OF CORRELATION BETWEEN RATES OF NON-SYNONYMOUS AND SYNONYMOUS SUBSTITUTIONS IN RODENTS<\/p>\n

Gelfand M. S.
\nInstitute for Information Transmission Problems RAS, Moscow, Russia
\nState Scientific Center GosNIIGenetika, Moscow, Russia
\nDepartment of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia
\nEVOLUTION OF BACTERIAL REGULATORY SYSTEMS<\/p>\n

1<\/sup>\u00a0Nishio Y.,\u00a02<\/sup>Nakamura Y.,\u00a01<\/sup>Usuda Y.,\u00a03<\/sup>Kawarabayasi, Y.,\u00a04<\/sup>Yamagishi A.,\u00a01<\/sup>Kimura E.,\u00a01<\/sup>Matsui K.,\u00a05<\/sup>Sugimoto S., 6Kikuchi H,\u00a02<\/sup>Ikeo K.,\u00a02<\/sup>Gojobori T.
\n1<\/sup>Institute of Life Sciences, Ajinomoto Co., Inc., Kawasaki, Japan
\n2<\/sup>Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Mishima, Japan
\n3<\/sup>\u00a0Research Center for Glycoscience, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan
\n4<\/sup>Department of Molecular Biology, Tokyo University of Pharmacy and Life Science, Hachioji , Japan
\n5<\/sup>Fermentation & Biotechnology Laboratories, Ajinomoto Co., Inc., Kawasaki, Japan
\n6National Institute of Technology and Evaluation, Shibuya , Japan
\nCOMPARATIVE COMPLETE GENOME SEQUENCE ANALYSIS OF CORYNEBACTERIA<\/p>\n

Stamatakis A.P., Ludwig T., Meier H.
\nDepartment of Computer Science, Technische Universitat Munchen
\nDepartment of Computer Science, Ruprecht-Karls Universitat Heidelberg
\nCOMPUTING LARGE PHYLOGENIES WITH STATISTICAL METHODS: PROBLEMS AND SOLUTIONS<\/p>\n

1<\/sup>Sherbakov D.Yu. ,\u00a02<\/sup>Martens K.,\u00a02<\/sup>Schoen I.
\n1<\/sup>Limnological Institute SB RAS, Irkutsk, Russia
\n2<\/sup>Royal Belgian Institute for Natural sciences, Brussels, Belgium
\nEXPLAINING APPARENT STALL OF MOLECULAR EVOLUTION IN ASEXUAL OSTRACOD DARWINULA: MODELLING APPROACH<\/p>\n

1,2<\/sup>Vershinin A.V.,\u00a02<\/sup>Allnutt T.R.,\u00a02<\/sup>Knox M.R.,\u00a02<\/sup>Ambrose M.J.,\u00a02<\/sup>Ellis T.H.N.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>John Innes Centre, Norwich, UK
\nDOMINANT MODE IN PISUM DIVERSITY GENERATION: WHAT IS THE IMPACT OF TRANSPOSABLE ELEMENTS?<\/p>\n

Kapitonov V.V., Jurka J.
\nGenetic Information Research Institute, Mountain View, California, USA
\nMOLECULAR PALEONTOLOGY OF DNA TRANSPOSONS IN EUKARYOTIC GENOMES<\/p>\n

Wyrwicz L.S., Rychlewski L.
\nBioinformatics Laboratory, BioInfoBank Institute, Poznan, Poland
\nSCANNING THE HUMAN GENOME FOR REGULATORY ISLANDS WITH PHYLOGENETIC FOOTPRINTING ALGORITHM<\/p>\n

Zhivotovsky L.A.
\nN.I.Vavilov Institute of General Genetics RAS, Moscow, Russia
\nDATING POPULATION EXPANSION BASED ON STR VARIATION WITHIN Y-CHROMOSOME SNP-HAPLOGROUPS<\/p>\n

Zhou Z., Kwoh C.K.
\nBioinformatics Research Centre, School of CE, Nanyang Technological University, Singapore
\nAN EVOLUTIONARY LINEAGE FOR INTRON LOSS\/GAIN IN FIVE EUKAYOTIC GENOMES<\/p>\n

POSTER PRESENTATIONS<\/b><\/p>\n

1,2<\/sup>Babenko V.N.,\u00a01<\/sup>Sverdlov A.,\u00a01,2<\/sup>Rogozin I.B.,\u00a02<\/sup>Koonin E.V.\u00a01<\/sup>National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda MD, USA
\n2<\/sup>Institute of Cytology and Genetics RAS, Novosibirsk, Russia
\nEVOLUTION OF GENE STRUCTURE IN EUKARYOTIC GENOMES<\/p>\n

3<\/sup>Beresikov E.,\u00a01<\/sup>Novikova O.,\u00a02<\/sup>Makarevich I.,\u00a01<\/sup>Lashina V.,\u00a03<\/sup>Plasterk R.,1<\/sup>Blinov A.G.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Department of Agronomy and Plant Genetics, University of Minnesota, St. Paul, USA
\n3<\/sup>Hubrecht Laboratory, Netherlands Institute for Developmental Biology, Utrecht, The Netherlands EVOLUTIONARY RELATIONSHIPS AND DISTRIBUTION OF NON-LTR RETROTRANSPOSONS IN EUKARYOTES<\/p>\n

Chaley M.B., Frenkel F.E., Korotkov E.V., Skryabin K.G.
\nCentre “Bioengineering” RAS, Moscow, Russia
\nRELATIONSHIPS BETWEEN GENERAL CLASSIFICATION OF GENES’ LATENT TRIPLET PERIODICITY AND THE UNIVERSAL PHYLOGENETIC TREE<\/p>\n

1<\/sup>Favorov, A.V.,\u00a02<\/sup>Favorova O.O.,\u00a02<\/sup>Andreewski, T.V.,\u00a02<\/sup>Sudomoina, M.A.,\u00a02<\/sup>Alekseenkov, A.D.,\u00a02<\/sup>Kulakova, O.G.,\u00a02<\/sup>Boiko, A.N.,\u00a02<\/sup>Gusev, E.I.,\u00a03<\/sup>Parmigiani, G.,\u00a04<\/sup>\u00a0Ochs, M.F.
\n1<\/sup>\u00a0State Scientific Centre “GosNIIGenetika”, Moscow, Russia
\n2<\/sup>\u00a0Russian State Medical University, Moscow, Russia
\n3<\/sup>\u00a0Johns Hopkins University, Baltimore, MD, USA
\n4<\/sup>\u00a0Fox Chase Cancer Center, Philadelphia, PA, USA
\nMCMC METHOD HAS FOUND THAT MULTIPLE SCLEROSIS IS ASSOCIATED WITH TWO THREE-GENES COMBINATIONS<\/p>\n

1<\/sup>Gerasimova A.V., ,2,3<\/sup>Ravcheyev D.A.,\u00a01,2,3<\/sup>Gelfand M.S.,\u00a02<\/sup>\u00a0Rakhmaninova A.B.
\n1<\/sup>\u00a0State Scientific Center “GosNII Genetica”, Moscow, Russia
\n2<\/sup>\u00a0Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia
\n3<\/sup>\u00a0Institute For Information Transmission Problems RAS, Moscow, Russia
\nCOMPARATIVE GENOMIC ANALYSIS OF RESPIRATION SWITCH IN GAMMA-PROTEOBACTERIA<\/p>\n

Hakobyan G.O., Margaryan T.V.
\nTHE DISTANCE FUNCTION FOR COMPUTING THE CONTINUOUS DISTANCE OF BIOPOLYMER SEQUENCES
\nDepartment of Physics, Yerevan State University, Yerevan, Armenia<\/p>\n

1<\/sup>Katyshev A.I.,\u00a02<\/sup>Rogozin I.B,\u00a01<\/sup>Konstantinov Y.M.
\n1<\/sup>Siberian Institute of Plant Physiology and Biochemistry SB RAS, Irkutsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nGENOME-WIDE IDENTIFICATION OF MITOCHONDRIAL DNA TOPOISOMERASE I IN ARABIDOPSIS<\/p>\n

Korostishevsky M., Bonne-Tamir B.
\nDept. of Human Genetics and Molecular medicine, Sackler School of Medicine, Tel-Aviv University, Ramat-Aviv, Israel
\nA SIMPLE TEST FOR LINKAGE DISEQUILIBRIUM BETWEEN A MARKER ALLELE AND A GENE MUTATION IN HETEROZYGOTE CARRIERS<\/p>\n

1<\/sup>Korostishevsky M,\u00a02<\/sup>Burd A,\u00a02<\/sup>Mester D,\u00a01<\/sup>Bonne’-Tamir B,\u00a02<\/sup>Nevo E,\u00a02<\/sup>Korol A.
\n1<\/sup>Department of Human Genetics and Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel
\n2<\/sup>Institute of Evolution, University of Haifa, Haifa, Israel
\nEVOLUTIONARY TREE RECONSTRUCTION AND TRAVELING SALESMAN PROBLEM: A POWERFUL ALGORITHM FOR SHAGGY TREES<\/p>\n

1,2<\/sup>Kovaleva G.Y.,\u00a01<\/sup>Mironov A.A.,\u00a02<\/sup>Gelfand M.S.
\n1<\/sup>Moscow State University, Department of Bioengeneering and Bioinformatics, Moscow, Russia
\n2<\/sup>Institute for Information Transmission Problems, RAS, Moscow, Russia
\nTHE CONSERVATION OF TRANSCRIPTION FACTOR-BINDINS SITES IN SACCHAROMYCES GENOMES<\/p>\n

1<\/sup>Novikova O.,\u00a02<\/sup>Fursov M.,\u00a03<\/sup>Beresikov E.,\u00a01<\/sup>Blinov A.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Novosibirsk Center of Information Technologies “UniPro”, Novosibirsk, Russia
\n3<\/sup>Hubrecht Laboratory, Netherlands Institute for Developmental Biology, Utrecht, The Netherlands. NEW LTR RETROTRANSPOSABLE ELEMENTS FROM EUKARIOTIC GENOMES<\/p>\n

1<\/sup>Salina E.A.,\u00a01<\/sup>Adonina I.G.,\u00a02<\/sup>Lim Y.K.,\u00a01<\/sup>Scherban’ A.B.,\u00a01<\/sup>Vatolina T.Yu.,\u00a02<\/sup>Leitch A.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Queen Mary University, London, UK
\nEVOLUTION OF DIPLOID PROGENITORS OF COMMON WHEAT ON THE BASE OF RAPD AND SUBTELOMERIC REREATS ANALYSIS<\/p>\n

Triboy T.I., Sherbakov D.Yu.
\nLimnological Institute SB RAS, Irkutsk, Russia
\nCOUNTERING COORDINATED AMINO ACID SUBSTITUTIONS IN PHYLOGENETIC ANALYSIS<\/p>\n

1<\/sup>Watanabe M.,\u00a02<\/sup>Goto N.,\u00a01<\/sup>Watanabe Y.,\u00a01<\/sup>Nishiguchi S.,\u00a01<\/sup>Shimada K.,\u00a02<\/sup>Yasunaga T.,\u00a01<\/sup>Yamanishi H.
\n1<\/sup>Hirakata Ryoikuen, Osaka, Japan
\n2<\/sup>Department of Human Genome Research, Genome Information Research Center, Osaka University, Osaka, Japan
\nEVOLUTION OF INTERLEUKIN-1<\/sup>8 BINDING PROTEIN FAMILY<\/p>\n

COMPUTER DEMONSTRATION<\/b><\/p>\n

1<\/sup>Korostishevsky M,\u00a02<\/sup>Burd A,\u00a02<\/sup>Mester D,\u00a01<\/sup>Bonne’-Tamir B,\u00a02<\/sup>Nevo E,\u00a02<\/sup>Korol A.
\n1<\/sup>Department of Human Genetics and Molecular Medicine, Sackler School of Medicine, Tel Aviv University, Tel Aviv, Israel
\n2<\/sup>Institute of Evolution, University of Haifa, Haifa, Israel
\nEVOLUTIONARY TREE RECONSTRUCTION AND TRAVELING SALESMAN PROBLEM: A POWERFUL ALGORITHM FOR SHAGGY TREES<\/p>\n

COMPUTATIONAL SYSTEM BIOLOGY<\/b><\/big><\/p>\n

ORAL REPORTS<\/b><\/p>\n

1<\/sup>Chaouiya C.,\u00a02<\/sup>Sanchez L.,\u00a01<\/sup>\u00a0Thieffry D.
\n1<\/sup>Laboratoire de Genetique et Physiologie du Developpement, Marseille, France
\n2<\/sup>Centro de Investigaciones Biologicas, Madrid, Spain
\nFROM GRADIENTS TO STRIPES: A LOGICAL ANALYSIS OF THE GENETIC NETWORK CONTROLLING EARLY DROSOPHILA SEGMENTATION<\/p>\n

1<\/sup>Gor, V.,\u00a01<\/sup>Shapiro B.E.,\u00a02<\/sup>Jonsson, H.,\u00a01<\/sup>Heisler, M,\u00a01<\/sup>Venugopala Reddy, G.,\u00a01<\/sup>Meyerowitz EM,\u00a03<\/sup>Mjolsness E.
\n1<\/sup>California Institute of Technology, Pasadena, CA, USA
\n2<\/sup>Lund University, Lund, Sweden
\n3<\/sup>University of California, Irvine, CA, USA
\nA SOFTWARE ARCHITECTURE FOR DEVELOPMENTAL MODELING IN PLANTS: THE COMPUTABLE PLANT PROJECT<\/p>\n

Hofestaedt R., Chen M.
\nBioinformatics \/ Medical Informatics, Technische Fakultaet, Universitaet Bielefeld, Bielefeld, Germany
\nMETABOLIC PATHWAY PREDICTION\/ALIGNMENT<\/p>\n

2,3<\/sup>\u00a0Likhoshvai V.A.,\u00a01<\/sup>Demidenko G.V.,\u00a01<\/sup>Fadeev S.I.
\n1<\/sup>Sobolev Institute for Mathematics SB RAS, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n3<\/sup>Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nMODELLING OF SUBSTANCE SYNTHESIS PROCESS WITHOUT BRANCHING BY THE DELAY EQUATION<\/p>\n

Mironov A.A.
\nMoscow State University, Department of Bioengineering and Bioinformatics, Moscow, Russia
\nState Scientific Centre “GosNIIGenetica”, Moscow, Russia
\nRIBOSWITCHES – A NOVEL TYPE OF REGULATORY SYSTEM<\/p>\n

1<\/sup>\u00a0Nedosekina E. A.,\u00a01<\/sup>Ananko E. A.,\u00a01,2<\/sup>Likhoshvai V.A.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nCOMPUTER MODELING OF THE FUNCTION OF TRANSCRIPTION FACTORS DURING MACROPHAGE ACTIVATION
\n1<\/sup>\u00a0Nutsch T.,\u00a02<\/sup>\u00a0Marwan W.,\u00a03<\/sup>\u00a0Oesterhelt D.,\u00a01<\/sup>\u00a0Gilles E.D.
\n1<\/sup>\u00a0Max-Planck-Institute for Dynamics of Complex Technical Systems, Magdeburg, Germany\u00a02<\/sup>\u00a0Science & Technology Research Centre, University of Hertfordshire, U. K.
\n3<\/sup>\u00a0Max-Planck-Institute for Biochemistry, Martinsried, Germany
\nA COHERENT KINETIC MODEL OF SENSING AND RESPONSE IN HALOBACTERIUM SALINARIUM PHOTOTAXIS BASED ON THE MECHANISM OF FLAGELLAR MOTOR SWITCHING<\/p>\n

Omelyanchuk L.V., Gunbin K.V.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nELEMENTARY MODULE, RECOGNIZING MORPHOGENETIC GRADIENTS IN THE TISSUES<\/p>\n

Omelianchuk N.A., Mironova V.V., Poplavsky A.S., Kukeeva Yu.A., Podkolodny N.L., Kolchanov N.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nAGNS: ARABIDOPSIS GENENET SUPPLEMENTARY DATABASE<\/p>\n

Peng F., Pio F.
\nDepartment of Molecular Biology & Biochemistry, Simon Fraser University, Burnaby, British Columbia, Canada
\nPROTEIN-PROTEIN INTERACTION NETWORK OF APOPTOSIS SIGNALING PATHWAYS AND ITS USAGE TO IDENTIFY APOPTOTIC REGULATORY ELEMENTS<\/p>\n

1<\/sup>Samsonova M.,\u00a01<\/sup>Surkova S.,\u00a02<\/sup>Jaeger J.,\u00a02<\/sup>Reinitz J.
\n1<\/sup>\u00a0Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia
\n2<\/sup>\u00a0Department of Applied Mathematics and Statistics, and Center for Developmental Genetics, Stony Brook University, Stony Brook, NY, USA
\nQUANTITATIVE APPROACH TO THE FUNCTIONAL GENOMICS OF DEVELOPMENT<\/p>\n

Srividhya, K.V., Krishnaswamy, S.
\nBioinformatics Centre, School of Biotechnology, Madurai Kamaraj University, Tamil Nadu, India
\nA SIMULATION MODEL OF ENVZ-OMPR TWO COMPONENT SYSTEM IN ESCHERICHIA COLI<\/p>\n

Tchuraev R.N.
\nInstitute of Biology, Ufa Research Center, Russian Academy of Sciences, Ufa, Russia
\nPRINCIPLES OF ORGANIZATION AND LAWS OF FUNCTIONING IN CONTROL GENE NETWORKS<\/p>\n

1,2<\/sup>Zabarovsky E.R.,\u00a01<\/sup>Kashuba V.I.,\u00a01<\/sup>Li J.,\u00a01<\/sup>Kutsenko A.S.,\u00a01<\/sup>Protopopov A.I.,\u00a01<\/sup>Petrenko L,\u00a01<\/sup>Wang F.,\u00a03<\/sup>Senchenko V.N.,\u00a04<\/sup>Kadyrova E.,\u00a01<\/sup>Zabarovska V.I.,\u00a02<\/sup>Muravenko O.V.,\u00a02<\/sup>Zelenin A.V.,\u00a02<\/sup>Kisselev L.L.,\u00a01<\/sup>Winberg G.,\u00a01<\/sup>Ernberg I.,\u00a04<\/sup>Braga E.,\u00a05<\/sup>Lerman M.I.,\u00a01<\/sup>Klein G.
\n1<\/sup>\u00a0MTC and CGB, Karolinska Institute, Stockholm, Sweden
\n2<\/sup>EIMB, RAS, Moscow, Russia
\n3<\/sup>Bioengineering Center and EIMB, RAS, Moscow, Russia
\n4<\/sup>Russian State Genetics Center, Moscow, Russia
\n5<\/sup>\u00a0FCI-NCI, Frederick, USA
\nRESTRICTION SITE TAGGED PASSPORTS AND MICROARRAYS FOR ANALYSIS OF COMPLEX BIOLOGICAL SYSTEMS<\/p>\n

POSTER PRESENTATIONS<\/b><\/p>\n

Abdeev R.M.
\nVavilov Institute of General Genetics RAS, Moscow, Russia
\nCenter for Theoretical Problems of Physical-Chemical Bases of Pharmacology RAS, Moscow, Russia
\nA SYSTEMIC APPROACH TO COMPLEX, MULTI-FACTOR AUTOIMMUNE DISEASES AIMED AT CREATION OF ADEQUATE MODELS OF PATHOLOGIES (E.G. PSORIASIS)<\/p>\n

Ananko E.A., Nedosekina E.A, Oshchepkov D.Yu., Lokhova I.V., Likhoshvai V.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nEBV INFECTION AND EBV TRANSFORMATION: RECONSTRUCTION OF GENE NETWORKS IN THE GENENET SYSTEM AND SEARCHING FOR REGULATORY POINTS<\/p>\n

1<\/sup>Fadeev S.I.,\u00a01<\/sup>Gainova I.A.,\u00a01<\/sup>Berezin A.Yu.,\u00a02<\/sup>Ratushny A.V.,\u00a02<\/sup>Matushkin Yu.G.,\u00a02,3<\/sup>Likhoshvai V.A.
\n1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n3<\/sup>Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nDETERMINATION OF STATIONARY SOLUTIONS IN GENE NETWORK MODELS BY HOMOTOPY METHOD<\/p>\n

1<\/sup>Fadeev S.I.,\u00a02<\/sup>Osokina V.A.,\u00a03,4<\/sup>Likhoshvai V.A.
\n1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia
\n2<\/sup>Novosibirsk State University, Novosibirsk, Russia
\n3<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n4<\/sup>Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nABOUT COMPUTATIONAL RESEARCH OF MATHEMATICAL MODELS OF HYPOTHETICAL GENE NETWORKS BY PARAMETER CONTINUATION.<\/p>\n

Galimzyanov A.V.
\nInstitute of Biology, Ufa Research Center, Russian Academy of Sciences, Ufa, Russia
\nON ONE ALGORITHM FOR MODELING PASSIVE TRANSPORT IN CELL SETS OF ARBITRARY CONFIGURATION<\/p>\n

1<\/sup>Golubyatnikov V.P.,\u00a02<\/sup>Makarov E.V.
\n1<\/sup>Institute of Mathematics SB RAS, Novosibirsk, Russia
\n2<\/sup>Siberian Department of International Institute for Nonlinear Science RAS, Novosibirsk, Russia
\nCLOSED TRAJECTORIES IN THE GENE NETWORKS<\/p>\n

1<\/sup>Golubyatnikov V.P. ,\u00a01<\/sup>Volokitin E.P.,\u00a02,3<\/sup>Likhoshvai V.A.,\u00a04<\/sup>Osipov A.F.
\n1<\/sup>Institute of Mathematics SB RAS, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n3<\/sup>Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\n4<\/sup>Novosibirsk State University, Novosibirsk, Russia
\nHOPF BIFURCATION AND CLOSED TRAJECTORIES IN THE GENE NETWORKS<\/p>\n

Gorbunov K.Yu., Lyubetsky V.A.
\nInstitute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia
\nA MODEL OF TRYPTOPHAN BIOSYNTHESIS REGULATION<\/p>\n

Gunbin K.V., Omelyanchuk L.V., Ananko E.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nTWO GENE NETWORKS UNDERLYING THE FORMATION OF THE ANTERIOR-POSTERIOR AND DORSO-VENTRAL WING IMAGINAL DISC COMPARTMENT BOUNDARIES IN DROSOPHILA MELANOGASTER<\/p>\n

2<\/sup>Gursky V.V.,\u00a01<\/sup>Kozlov K.N.,\u00a02<\/sup>Samsonov A.M.
\n1<\/sup>Dept. of computational biology, State Polytechnical University, St.Petersburg, Russia
\n2<\/sup>A.F. Ioffe Physico-technical Institute of the Russian Academy of Sciences, St.Petersburg, Russia
\nCOMBINED OPTIMIZATION TECHNIQUE FOR BIOLOGICAL DATA FITTING<\/p>\n

Guryeva Ya.P., Stepanenko I.L., Likhoshvai V.A.
\nInstitute of Cytology and Genetics, SB RAS, Novosibirsk, Russia
\nMATHEMATICAL MODEL OF THE GENE NETWORK OF TNF?-INDUCED NF-kappaB ACTIVATION<\/p>\n

1<\/sup>V.V.Kogai,\u00a01<\/sup>S.I.Fadeev,\u00a02,3<\/sup>V.A.Likhoshvai
\n1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia
\n2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n3<\/sup>Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nABOUT NUMERICAL INVESTIGATION OF AUTO-OSCILLATIONS IN HYPOTHETICAL GENE NETWORKS<\/p>\n

Kolpakov F.A.
\nBiosoft.Ru\/DevelopmentOnTheEdge.com, Novosibirsk, Russia;
\nDesign Technological Institute of Digital Techniques SB RAS, Novosibirsk, Russia.
\nBIOUML – OPEN SOURCE EXTENSIBLE WORKBENCH FOR SYSTEMS BIOLOGY<\/p>\n

1,2<\/sup>,Kondrakhin Yu.V.,\u00a01<\/sup>Podkolodnaya O.A.,\u00a01<\/sup>Turnaev I.A.,\u00a01<\/sup>Kolchanov N.A.
\n1<\/sup>\u00a0Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nSTATISTICAL ANALYSIS OF MICROARRAY DATA: IDENTIFICATION AND CLASSIFICATION OF HUMAN CELL CYCLE GENES<\/p>\n

1<\/sup>Lashin S.A.,\u00a01,2<\/sup>Likhoshvai V.A.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nEVOLUTIONARY ALGORITHMS FOR MATHEMATICAL MODELS OF GENE NETWORKS IDENTIFICATION<\/p>\n

Lashin S.A., Likhoshvai V.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nEXPLICIT INTEGRAL METHOD FOR NONLINEAR DYNAMIC MATHEMATICAL MODELS IDENTIFICATION<\/p>\n

1,2<\/sup>\u00a0Likhoshvai V.\u0410.
\n1<\/sup>\u00a0Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nON THE STATIONARY POINTS OF REGULATORY CONTOURS OF GENE NETWORKS<\/p>\n

Mironova V.V., Omelianchuk N.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nGENE NETWORK OF THE ARABIDOPSIS DEVELOPING SHOOT MERISTEM AND ITS DESCRIPTION IN THE GENENET COMPUTER SYSTEM<\/p>\n

2,4<\/sup>Peshkov,\u00a01,3<\/sup>Likhoshvai V.A.,\u00a01<\/sup>Matushkin Yu.G.,\u00a02<\/sup>Fadeev S.I.
\n1<\/sup>\u00a0Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0Mathematical Institute of SB RAS, Novosibirsk, Russia
\n3<\/sup>Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\n4<\/sup>Novosibirsk State University, Novosibirsk, Russia
\nON RESEARCH INTO HYPOTHETICAL NETWORKS OF ECOLOGICAL NATURE<\/p>\n

Pisarev A., Blagov M., Samsonova M.
\nDepartment of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia
\nMETHOD FOR INTEGRATION OF DATABASES WITH COMMON SUBJECT DOMAINS<\/p>\n

1,2<\/sup>Podkolodny N.L.,\u00a01<\/sup>Ananko E.A.,\u00a01<\/sup>Loktev K.A.,\u00a01<\/sup>Rasskazov D.A.,\u00a01,3<\/sup>Miginsky D.S.,\u00a03<\/sup>Zapadinskaya A.E.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia
\n3<\/sup>Novosibirsk State University, Novosibirsk, Russia
\nGENENET: VISUAL MODELING AND ANALYSIS OF GENE NETWORKS<\/p>\n

1<\/sup>Ratushny A.V.,\u00a01,2<\/sup>Likhoshvai V.A.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\nTOWARDS COMPUTER DYNAMIC MODELING OF WHOLE CELL<\/p>\n

Shen L., Tan E.C.
\nSchool of Computer Engineering, Nanyang Technological University, Nanyang Avenue, Singapore, Singapore
\nEFFICIENT ALGORITHM FOR GENE SELECTION USING PLS-RLSC<\/p>\n

Surkova S. Yu., Samsonova M.G.
\nSt.Petersburg State Polytechnical University, St.Petersburg , Russia
\nTEMPORAL AND SPATIAL PRECISION IN FORMATION OF SEGMENTATION GENE EXPRESSION DOMAINS IN DROSOPHILA<\/p>\n

Turnaev I.I., Ananko E.A., Podkolodnaya O.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nCENTRAL REGULATION OF THE GENE NETWORK OF THE CELL CYCLE IN MAMMALS: AN ANALYSIS OF CLOSED REGULATORY LOOPS<\/p>\n

1<\/sup>Vasilenko N.L.,\u00a02,4<\/sup>Balueva K.E.,\u00a01,3<\/sup>Likhoshvai V.A.,\u00a02<\/sup>Nevinsky G.A.,\u00a01<\/sup>Matushkin Yu.G.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk, Russia
\n3<\/sup>Ugra Research Institute of Information Technologies, Khanty-Mansyisk, Russia
\n4<\/sup>Novosibirsk State University, Novosibirsk, Russia
\nCONSTRUCTION OF MOLECULAR TRIGGER IN E. COLI<\/p>\n

1<\/sup>Vladimirov N.V.,\u00a01,2<\/sup>Likhoshvai V.A
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0STOCHASTIC MODEL OF TRANSLATION ELONGATION BASED ON CONTINUOUS TIME MONTE CARLO METHOD<\/p>\n

Zhang C., Li S.
\nInstitute of Bioinformatics, MOE Key Laboratory of Bioinformatics, Tsinghua University, Beijing, P. R. China
\nMODELING OF NEURO-ENDOCRINE-IMMUNE NETWORK VIA SUBJECT ORIENTED LITERATURE MINING<\/p>\n

COMPUTER DEMONSTRATION<\/b><\/p>\n

Kolpakov F.A.
\nBiosoft.Ru\/DevelopmentOnTheEdge.com, Novosibirsk, Russia
\nDesign Technological Institute of Digital Techniques SB RAS, Novosibirsk, Russia
\nBIOUML – OPEN SOURCE EXTENSIBLE WORKBENCH FOR SYSTEMS BIOLOGY<\/p>\n

1<\/sup>Tarasov D.S.,\u00a02<\/sup>Leontiev A.Yu.,\u00a01<\/sup>Akberova N.I
\nKazan State University, Kazan, Russia
\nKazan State Academy of Veterinary Medicine, Kazan, Russia
\nA LANGUAGE FOR MODELING GENETIC REGULATION IN PROCARYOTES<\/p>\n

NEW APPROACHES TO ANALYSIS OF BIOMOLECULAR DATA AND PROCESSES<\/b><\/big><\/p>\n

ORAL REPORTS<\/b><\/p>\n

Akbari A., Algregtsen F.
\nDepartment of Informatics, University of Oslo, Oslo, Norway
\nAUTOMATIC LANE DETECTION AND SEPARATION IN ONE DIMENSIONAL DNA GEL IMAGES<\/p>\n

1<\/sup>Binder H.,\u00a01<\/sup>Kirsten T.,\u00a01<\/sup>Loeffler M.,\u00a01<\/sup>Preibisch St.,\u00a01,2<\/sup>Stadler P.
\n1<\/sup>Interdisciplinary Centre for Bioinformatics, University of Leipzig, Germany
\n2<\/sup>\u00a0Institute for Informatics, University of Leipzig, Germany
\nSEQUENCE-SPECIFIC SENSITIVITY OF OLIGONUCLEOTIDE PROBES – A MOLECULAR VIEW ON RNA\/DNA HYBRIDISATION ON MICROARRAYS AND CONSEQUENCES FOR GENE EXPRESSION ANALYSIS AND CHIP DESIGN<\/p>\n

Blagov M.S., Poustelnikova E.G., Pisarev A.S., Myasnikova E.M., Samsonova M.G.
\nSt.Petersburg State Polytechnical University, St.Petersburg, Russia
\nA SYSTEM FOR ON-LINE PROCESSING OF IMAGES OF GENE EXPRESSION PATTERNS<\/p>\n

Fattore M., Arrigo P.
\nCNR ISMAC, Section of Genoa, Genova, Italy
\nTOPICAL CLUSTERING OF BIOMEDICAL ABSTRACT by SELF ORGANIZING MAPS<\/p>\n

1<\/sup>Favorov A.V.,\u00a01,2,3<\/sup>Gelfand M.S.,\u00a01<\/sup>Gerasimova A. V.,\u00a01,3<\/sup>Mironov A.A.,\u00a01<\/sup>Makeev V.J.
\n1<\/sup>\u00a0State Scientific Centre “GosNIIGenetica”, Moscow, Russia
\n2<\/sup>\u00a0Institute for Problems of Information Transmission RAS, Moscow, Russia
\n3<\/sup>\u00a0Dept. of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia
\nGIBBS SAMPLER FOR IDENTIFICATION OF SYMMETRICALLY STRUCTURED, SPACED DNA MOTIFS WITH IMPROVED ESTIMATION OF THE SIGNAL LENGTH AND ITS VALIDATION ON THE ARCA BINDING SITES<\/p>\n

1<\/sup>Frisman E. Ya.,\u00a02<\/sup>Zhdanova O. L.
\n1<\/sup>Complex Analysis of Regional Problems Institute FEB RAS, Birobidzhan, Russia
\n2<\/sup>Institute of Automation and Control Processes FEB RAS, Vladivostok, Russia
\nMATHEMATICAL MODELLING AND ANALYSIS OF THE FIXATION PROCESS OF DISCRETE GENETIC STRUCTURES IN A MENDELIAN ONE-LOCUS POPULATION OF DIPLOID ORGANISMS<\/p>\n

1,2<\/sup>Gorban A.N.,\u00a01<\/sup>Popova T.G.,\u00a03<\/sup>Zinovyev A.Yu.
\n1<\/sup>Institute of Computational Modeling SB RAS, Krasnoyarsk, Russia
\n2<\/sup>Institute of polymer physics, ETH, Zurich, Switzerland
\n3<\/sup>Institut des Hautes Etudes Scientifiques, Bures-sur-Yvette, France
\nSEVEN CLUSTERS AND UNSUPERVISED GENE PREDICTION<\/p>\n

Lyubetsky V.A., V’yugin V.V.
\nInstitute for Information Transmission Problems RAS, Moscow, Russia
\nMEASURING THE DISSIMILARITY BETWEEN GENE AND SPECIES TREES, THE QUALITY OF A COG<\/p>\n

1<\/sup>Myasnikova E.M.,\u00a02<\/sup>Reinitz J.
\n1<\/sup>St.Petersburg State Polytechnical University, St.Petersburg, Russia
\n2<\/sup>\u00a0University at Stony Brook, New York, USA
\nDETERMINATION OF THE DEVELOPMENTAL AGE OF A DROSOPHILA EMBRYO FROM CONFOCAL IMAGES OF ITS SEGMENTATION GENE EXPRESSION PATTERNS<\/p>\n

Noe L., Kucherov G. LORIA\/INRIA-Lorraine, Villers-les-Nancy, France
\nYASS: ENHANCING THE SENSITIVITY OF DNA SIMILARITY SEARCH<\/p>\n

1<\/sup>Novichkov P.,\u00a02<\/sup>Brudno M.,\u00a01<\/sup>Mironov A.
\n1<\/sup>Moscow State University, Faculty of Bioengineering & Bioinformatics, Moscow, Russia
\n2<\/sup>Stanford University, Department of Computer Science Clark Center, Stanford, CA , USA
\nMAXIMAL INFORMATION CONTENT SEEDS FOR SEQUENCE ALIGNMENT<\/p>\n

1<\/sup>Pozdnyakov M.A.,\u00a01<\/sup>Orlov Yu.L.,\u00a01<\/sup>Vishnevsky O.V.,\u00a01<\/sup>Proscura A.L.,\u00a02<\/sup>Vityaev E.E.,\u00a03<\/sup>Arrigo P.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Sobolev Institute of Mathematics, Novosibirsk, Russia
\n3<\/sup>ISMAC, Genova, Italy
\nANALYSIS OF GENE REGULATORY SEQUENCES BY KNOWLEDGE DISCOVERY METHODS<\/p>\n

Shelenkov A.A., Chaley M.B., Korotkov E.V.
\nCenter of Bioengineering RAS, Moscow, Russia
\nREVELATION AND CLASSIFICATION OF DINUCLEOTIDE PERIODICITY OF BACTERIAL GENOMES USING THE METHODS OF INFORMATION DECOMPOSITION AND MODIFIED PROFILE ANALYSIS<\/p>\n

1,2<\/sup>Deyneko I.V.,\u00a03<\/sup>Kel A.E.,\u00a03<\/sup>Wingender E.,\u00a02<\/sup>Gossling F.,\u00a02<\/sup>Blocker H.,\u00a02,4<\/sup>Kauer G.
\n1<\/sup>\u00a0Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>\u00a0Department of Genome Analysis, GBF, Braunschweig, Germany
\n3<\/sup>\u00a0BIOBASE GmbH, Wolfenbuettel, Germany
\n4<\/sup>\u00a0FH Oldenburg\/Ostfriesland\/Wilhelmshaven, Germany
\nSIGNAL THEORY – AN ALTERNATIVE PERSPECTIVE OF PATTERN SIMILARITY SEARCH<\/p>\n

BIOINFORMATICS AND EDUCATION<\/b><\/big><\/p>\n

POSTER PRESENTATIONS<\/b><\/p>\n

1,2<\/sup>\u00a0Afonnikov, D.A.,\u00a01<\/sup>\u00a0Ivanisenko, V.A.,\u00a01<\/sup>\u00a0Ignatieva, E.V.,\u00a01<\/sup>\u00a0Levitsky, V.G.,\u00a01<\/sup>\u00a0Likhoshvai, V.A.,\u00a01<\/sup>\u00a0Nikolaev, S.V.,\u00a01<\/sup>\u00a0Orlov, Yu.L.,\u00a01<\/sup>\u00a0Titov, I.I.,1<\/sup>\u00a0Kolchanov N.A.
\n1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n2<\/sup>Novosibirsk State University, Novosibirsk, Russia
\nA CURRICULUM FOR BIOINFORMATICS AT THE CHAIR FOR INFORMATIONAL BIOLOGY, THE NOVOSIBIRSK STATE UNIVERSITY<\/p>\n

Korotkova M. A.
\nMoscow Engineering Physics Institute, Moscow, Russia
\nBIOINFORMATICS TEACHING IN MOSCOW ENGENEERING PHYSICS INSTITUTE (STATE UNIVERSITY)<\/p>\n

Lohmann M., Schomburg D.
\nCologne University Bioinformatics Center, Cologne, Germany
\nRESEARCH AND TEACHING AT THE COLOGNE UNIVERSITY BIOINFORMATICS CENTER (CUBIC) – MOLECULAR NETWORKS IN ORGANISMS<\/p>","protected":false},"excerpt":{"rendered":"

THE\u00a0Conference program (pdf): A PRELIMINARY VERSION July 24: Arrival July 25: Registration from 10:00 Opening Ceremony at 14:00. A preliminary working schedule by sections: July 25 – 26: COMPUTATIONAL STRUCTURAL AND FUNCTIONAL GENOMICS; July 27: COMPUTATIONAL STRUCTURAL AND FUNCTIONAL PROTEOMICS; … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":13,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2004\/en\/wp-json\/wp\/v2\/pages\/98"}],"collection":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2004\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2004\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/bgrs2004\/en\/wp-json\/wp\/v2\/users\/13"}],"replies":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/bgrs2004\/en\/wp-json\/wp\/v2\/comments?post=98"}],"version-history":[{"count":5,"href":"https:\/\/conf.icgbio.ru\/bgrs2004\/en\/wp-json\/wp\/v2\/pages\/98\/revisions"}],"predecessor-version":[{"id":182,"href":"https:\/\/conf.icgbio.ru\/bgrs2004\/en\/wp-json\/wp\/v2\/pages\/98\/revisions\/182"}],"wp:attachment":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2004\/en\/wp-json\/wp\/v2\/media?parent=98"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}