{"id":89,"date":"2021-09-16T16:28:43","date_gmt":"2021-09-16T09:28:43","guid":{"rendered":"https:\/\/conf.icgbio.ru\/bgrs2006\/?page_id=89"},"modified":"2021-09-20T10:14:30","modified_gmt":"2021-09-20T03:14:30","slug":"preliminary_program-2","status":"publish","type":"page","link":"https:\/\/conf.icgbio.ru\/bgrs2006\/en\/preliminary_program-2\/","title":{"rendered":"Conference program: a preliminary version"},"content":{"rendered":"

<\/p>\n

July 16:\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0Registration from 10:00<\/p>\n

Opening Ceremony at 14:00<\/p>\n

Plenar Session 14:30-18:00<\/p>\n

A PRELIMINARY WORKING SCHEDULE BY SECTIONS:<\/strong><\/h2>\n

July 17:\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0COMPUTATIONAL STRUCTURAL AND FUNCTIONAL GENOMICS;<\/p>\n

July 18:\u00a0COMPUTATIONAL STRUCTURAL AND FUNCTIONAL PROTEOMICS;<\/p>\n

July 19:\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0POSTER SESSION<\/p>\n

July 20:\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0COMPUTATIONAL EVOLUTIONARY BIOLOGY;<\/p>\n

NEW APPROACHES TO BIOMOLECULAR DATA AND PROCESSES ANALYSIS\/MODELING;<\/p>\n

July 21-22:\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0COMPUTATIONAL SYSTEMS BIOLOGY<\/p>\n

July 22:\u00a0Closing Ceremony at 17:30<\/p>\n

\u00a0<\/strong><\/p>\n

JULY\u00a0<\/strong>16<\/strong><\/p>\n

PLENAR SESSION<\/strong><\/p>\n

Mazo I.\u00a0<\/strong>*, Sivachenko A., Yuryev A., Daraselia N.<\/p>\n

Ariadne Genomics, Inc., Rockville MD 20850\u0431, USA<\/p>\n

MOLECULAR NETWORKS IN MAMMALS: EXTRACTION FROM LITERATURE AND MICROARRAY<\/p>\n

Rodin S.N.<\/strong>1*<\/sup>, Rodin A.S.2<\/sup><\/p>\n

1\u00a0<\/sup>Beckman Research Institute of the City of Hope, Duarte, CA, USA<\/p>\n

2\u00a0<\/sup>Human Genetics Center, School of Public Health, University of Texas, Houston, TX, USA\u00a0<\/sup><\/p>\n

GENE DUPLICATIONS IN EVOLUTION: FROM ORIGIN OF THE GENETIC CODE TO THE HUMAN GENOME<\/p>\n

Ivanov A.S.*<\/strong>, Gnedenko O.V., Molnar A.A., Mezentsev Yu.V., Lisitsa A.V., Archakov A.I.<\/p>\n

V.N.Orechovich Institute of Biomedical Chemistry RAMS, Moscow, Russia<\/p>\n

PROTEIN-PROTEIN INTERACTIONS AS NEW TARGETS FOR DRUG DESIGN: INTERACTIVE LINKS BETWEEN VIRTUAL AND EXPERIMENTAL APPROACHES<\/p>\n

Surkova S.Yu.*,\u00a0Samsonova M.G.<\/strong><\/p>\n

St. Petersburg State Polytechnical University, St. Petersburg, Russia<\/p>\n

SYSTEMS BIOLOGY OF SEGMENT DETERMINATION<\/p>\n

JULY\u00a0<\/strong>17<\/strong><\/p>\n

<\/h1>\n

COMPUTATIONAL STRUCTURAL AND FUNCTIONAL GENOMICS\u00a0AND TRANSCRIPTOMICS<\/h3>\n

\u00a0<\/strong><\/p>\n

ORAL PRESENTATIONS<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
\u2116 \u2116<\/td>\nAUTHOR (S )\u00a0AND TITLE OF A TALK<\/td>\n<\/tr>\n
1.<\/td>\nSeliverstov A.V.*,\u00a0Lyubetsky V.A.<\/p>\n

Institute for Information Transmission Problems RAS, Moscow, Russia<\/p>\n

GENE EXPRESSION REGULATION IN CHLOROPLASTS AND BACTERIA<\/td>\n<\/tr>\n

2.<\/td>\nte Boekhorst R<\/strong>.1*<\/sup>, Walter K.2<\/sup>, Elgar G.3<\/sup>, Gilks W.R.2<\/sup>, Abnizova I.2<\/sup><\/p>\n

1<\/sup>University of Hertfordshire, College Lane,\u00a0\u00a0Hatfield, UK<\/p>\n

1<\/sup>MRC-BSU, Robinson Way, Cambridge, UK<\/p>\n

STATISTICAL INFORMATION CHARACTERIZATION OF CONSERVED NON-CODING ELEMENTS IN VERTEBRATES<\/td>\n<\/tr>\n

3.<\/td>\nLevitsky<\/strong>\u00a0<\/strong>V<\/strong>.<\/strong>G<\/strong>.1,2<\/sup>*<\/strong>,\u00a0Ignatieva\u00a0E.V.1,2<\/sup>,\u00a0Ananko\u00a0E.A.1<\/sup>.,\u00a0Merkulova\u00a0T.I.1<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS,\u00a0Novosibirsk, Russia<\/p>\n

2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

THE SITEGA AND PWM METHODS APPLICATION FOR TRANSCRIPTION FACTOR BINDING SITES RECOGNITION IN EPD PROMOTERS<\/td>\n<\/tr>\n

4.<\/td>\nShelest E.S.<\/strong>*1<\/sup>, Wingender E.1,2<\/sup><\/p>\n

1<\/sup>Department of Bioinformatics, UKG, University of G\u00f6ttingen, G\u00f6ttingen, Germany<\/p>\n

2<\/sup>BIOBASE GmbH, Wolfenb\u00fcttel, Germany<\/p>\n

PROMOTER MODELING APPROACHES APPLIED TO THE INVESTIGATION OF P63 UP- AND DOWNSTREAM PROMOTERS<\/h2>\n<\/td>\n<\/tr>\n

5.<\/td>\nVorobjev Y.N., Emelianov D.Y.<\/p>\n

Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk,\u00a0Russia<\/p>\n

MODELING OF DATA BASE OF\u00a0\u00a0CONTEXT-DEPENDENT CONFORMATIONAL PARAMETERS OF DNA DUPLEXES<\/td>\n<\/tr>\n

6.<\/td>\nKamzolova S.G.,\u00a0Osypov A.A.<\/strong>*<\/sup>, Dzhelyadin T.R., Beskaravainy P.M., Sorokin A.A.<\/p>\n

Institute of Cell Biophysics of RAS, Pushchino, Moscow region, Russia.<\/p>\n

CONTEXT-DEPENDENT EFFECTS OF UPSTREAM A-TRACTS ON PROMOTER ELECTROSTATIC PROPERTIES AND FUNCTION<\/td>\n<\/tr>\n

7.<\/td>\n\n

Grosse I.<\/h3>\n

Leibniz Institute of Plant Genetics and Crop Plant Research (IPK) and<\/p>\n

Bioinformatics Center Gatersleben-Halle, Gatersleben, Germany<\/p>\n

COMPUTATIONAL IDENTIFICATION OF TRANSCRIPTION FACTOR BINDING SITES WITH VARIABLE ORDER BAYESIAN NETWORKS<\/td>\n<\/tr>\n

8.<\/td>\nOrlov Yu.L.1<\/sup>, Lipovich L.1<\/sup>, Zhou J.1<\/sup>, Yong H.C.2<\/sup>, Li Yi2<\/sup>, Shahab A.2<\/sup>, Kuznetsov V.A.1<\/sup>*<\/p>\n

1 Genome Institute of Singapore, Singapore<\/p>\n

2 Bioinformatics Institute, Singapore<\/p>\n

A COMPREHENSIVE QUALITY ASSESSMENT OF THE AFFYMETRIX U133A\/B PROBESETS BY AN INTEGRATED GENOMIC AND CLINICAL APPROACH<\/td>\n<\/tr>\n

9.<\/td>\nKuznetsov V.A.<\/strong>*, Zhou J., George J., Orlov Yu.L.<\/p>\n

Genome Institute of Singapore, Singapore<\/p>\n

GENOME-WIDE CO-EXPRESSION PATTERNS OF HUMAN CIS-ANTISENSE GENE PAIRS<\/td>\n<\/tr>\n

10.<\/td>\nTutukina\u00a0M.N.,\u00a0Masulis\u00a0I.S.,\u00a0Ozoline\u00a0O.N.*<\/p>\n

Institute of Cell Biophysics RAS, Pushchino, Moscow region, Russia<\/p>\n

TOWARDS THE IDENTIFICATION OF ANTISENSE RNA WITHIN GENES OF TRANSCRIPTION REGULATORS\u00a0<\/strong><\/td>\n<\/tr>\n

11.<\/td>\n\n

Ponomarenko M.P.1*<\/sup>, Omelyanchuk N.A.1<\/sup>, Katokhin A.V.1<\/sup>, Kolchanov N.A.1<\/sup><\/h2>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

THE CONTENT OF miRNAs IN\u00a0ARABIDOPSIS THALIANA\u00a0CORRELATES WITH THE OCCURRENCE OF WRHW AND DRYD<\/td>\n<\/tr>\n

12.<\/td>\nVishnevsky O.V.1,2<\/sup>*, Konstantinov Yu.M.3<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

3<\/sup>Siberian Institute of Plant Physiology and Biochemistry SB RAS, Irkutsk, Russia<\/p>\n

ANALYSIS OF THE NUCLEOTIDE CONTEXT OF HIGHER PLANT MITOCHONDRIAL mRNA EDITING SITES<\/td>\n<\/tr>\n

13.<\/td>\nAbhishek K.1<\/sup>*, Karnick H.1<\/sup>, Mitra P.2<\/sup><\/p>\n

1<\/sup>Indian Institute of Technology Kanpur, Kanpur, India;<\/p>\n

2<\/sup>Indian Institute of Technology Kharagpur, Kharagpur, India<\/p>\n

A KNOWLEDGE AND DATA BASED HYBRID APPROACH TO GENE CLUSTERING<\/td>\n<\/tr>\n

14.<\/td>\nEfimov V.M.1<\/sup>*<\/sup>, Badratinov M.S.2<\/sup>, Katokhin A.V.2,3<\/sup><\/p>\n

1<\/sup>Institute of Systematics and Ecology of Animals SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

3<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

INTERPRETATION OF RESULTS OF SOM ANALYSIS OF MICROARRAY DATA BY PRINCIPAL COMPONENTS<\/td>\n<\/tr>\n

15.<\/td>\nSubkhankulova T.<\/strong>,\u00a0Livesey F.J.<\/p>\n

Gurdon Institute and Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge, CB2 1 QN, UK<\/p>\n

HOW SIMILAR ARE PHENOTYPICALLY IDENTICAL CELLS AT THE TRANSCRIPTIONAL LEVEL?<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

\u00a0<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

JULY\u00a0<\/strong>18<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

COMPUTATIONAL STRUCTURAL AND FUNCTIONAL PROTEOMICS<\/strong><\/p>\n

ORAL PRESENTATIONS<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
\u2116 \u2116<\/td>\nAUTHOR (S )\u00a0AND TITLE OF A TALK<\/td>\n<\/tr>\n
1.<\/td>\nVlasov P.K.*, Esipova N.G., Tumanyan V.G.<\/p>\n

Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia<\/p>\n

CONFORMATION PROPERTIES OF SHORT OligopeptideS AND PREDICTION OF PROTEIN CHAIN CONFORMATION<\/td>\n<\/tr>\n

2.<\/td>\nVolynsky P.E<\/strong>.*, Vereshaga Ya. A., Nolde D.E., Efremov R.G.<\/p>\n

M.M. Shemyakin and Yu.A. Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia<\/p>\n

PROBING DIMERIZATION\u00a0OF TRANSMEMBRANE PEPTIDES VIA MOLECULAR DYNAMICS IN EXPLICIT BILAYERS<\/td>\n<\/tr>\n

3.<\/td>\nChekmarev\u00a0S.F.1<\/sup>*,\u00a0Krivov\u00a0S.V.2<\/sup>,\u00a0Karplus\u00a0M.2,3<\/sup>*<\/p>\n

1\u00a0<\/sup>Institute of Thermophysics SB RAS, Novosibirsk, Russia<\/p>\n

2\u00a0<\/sup>Laboratoire de Chimie Biophysique, ISIS, Universit\u00e9 Louis Pasteur, Strasbourg, France<\/p>\n

3\u00a0<\/sup>Department of Chemistry & Chemical Biology, Harvard University, Cambridge, MA, USA<\/p>\n

\u201cSTRANGE KINETICS\u201d OF UBIQUITIN FOLDING: INTERPRETATION IN TERMS OF A SIMPLE KINETIC MODEL<\/td>\n<\/tr>\n

4.<\/td>\nAfonnikov D.A.1,2<\/sup><\/p>\n

1\u00a0<\/sup>Institute of Cytology and Genetics RAS, Novosibirsk, Russia<\/p>\n

2\u00a0<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

RESIDUE-RESIDUE CONTACT MAP PREDICTION FOR PROTEINS<\/td>\n<\/tr>\n

5.<\/td>\nAksianov E.1<\/sup><\/strong>*, Zanegina O.2<\/sup>, Alexeevski A.3<\/sup>, Karyagina A.4,5<\/sup>, Spirin S.3<\/sup><\/p>\n

1<\/sup>Virology department, Biological faculty, Moscow State University, Moscow, Russia<\/p>\n

2<\/sup>Bioengineering and Bioinformatics faculty, Moscow State University, Moscow, Russia<\/p>\n

3<\/sup>Belozersky Institute, Moscow State University, Moscow Russia<\/p>\n

4<\/sup>N.F. Gamaleya Research Institute of Epidemiology and Microbiology, Moscow, Russia<\/p>\n

5<\/sup>Institute of Agricultural Biotechnology, Moscow, Russia<\/p>\n

A TOOL FOR COMPARATIVE ANALYSIS OF SOLVENT MOLECULES IN PDB STRUCTURES<\/td>\n<\/tr>\n

6.<\/td>\nNaumoff D.G.<\/strong><\/p>\n

State Institute for Genetics and Selection of Industrial Microorganisms, Moscow, Russia<\/p>\n

DEVELOPMENT OF A HIERARCHICAL CLASSIFICATION OF THE TIM-BARREL TYPE GLYCOSIDE HYDROLASES<\/td>\n<\/tr>\n

7.<\/td>\nSafro M.*<\/strong>1<\/sup>,Tworowski D.1<\/sup>,\u00a0\u00a0Feldman A.2<\/sup><\/p>\n

1<\/sup>Department of Structural Biology, Weizmann Institute of Science, Rehovot, Israel;<\/p>\n

2<\/sup>EML Research gGmbH, Heidelberg, Germany<\/p>\n

HOW ARE CHARGED RESIDUES DISTRIBUTED AMONG FUNCTIONALLY DISTINCT STRUCTURAL DOMAINS OF AMINOACYL-TRNA SYNTHETASES?<\/td>\n<\/tr>\n

8.<\/td>\nIvanisenko1<\/sup>\u00a0V.A<\/strong>., Demenkov2<\/sup>\u00a0P.S., Fomin1<\/sup>\u00a0E.S., Oshurkov3<\/sup>\u00a0I.S., Korotkov3<\/sup>\u00a0R.O., Aman1<\/sup>\u00a0E.E., Pintus1,3<\/sup>\u00a0S.S., Startcev3<\/sup>\u00a0K.S., Tatarnikova3<\/sup>\u00a0L.Yu., Panina3<\/sup>\u00a0I.I., Sobolev3<\/sup>\u00a0A.A., Seleznev3<\/sup>\u00a0I.V., Elohov3<\/sup>\u00a0V.Yu., Golovina3<\/sup>\u00a0A.N., Aknazarov3<\/sup>\u00a0Z.I., Sharonova3<\/sup>\u00a0I.V., Krestianova3<\/sup>\u00a0M.A., Mishchenko1<\/sup>\u00a0E.L., Magdysuk3<\/sup>\u00a0A.V., Nemiatov3<\/sup>\u00a0A.I.<\/p>\n

1\u00a0<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>\u00a0Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

3<\/sup>\u00a0\u00a0Novosibirsk State University, Novosibirsk, Russia<\/p>\n

FASTPROT: A COMPUTATIONAL WORKBENCH FOR ANALYSIS OF FUNCTION, ACTIVITY AND STRUCTURE OF PROTEINS<\/td>\n<\/tr>\n

9.<\/td>\nChernorudskiy A.L., Shorina A.S., Garcia A.,\u00a0Gainullin M.R*<\/sup><\/p>\n

Nizhny Novgorod State Medical Academy, Nizhny Novgorod, Russia<\/p>\n

DIRECT INFLUENCE OF UBIQUITYLATION ON A TARGET PROTEIN ACTIVITY: \u201cLOSS-OF-FUNCTION\u201d MECHANISM REVEALED BY COMPUTATIONAL ANALYSIS<\/td>\n<\/tr>\n

10.<\/td>\nDemenkov P.S.1<\/sup>*, Aman E.E.2<\/sup>, Ivanisenko V.A.2,3<\/sup><\/p>\n

1<\/sup>Sobolev Institute of Mathematics of the SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

3<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

PREDICTION IN CHANGES OF PROTEIN THERMODYNAMIC STABILITY UPON SINGLE MUTATIONS<\/td>\n<\/tr>\n

11.<\/td>\nKochetov A.V.<\/strong>1*<\/sup>, Sarai A.2<\/sup>, Kolchanov N.A.1<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics, Novosibirsk, Russia<\/p>\n

2<\/sup>Kyushu Institute of Technology, Dept. Biochemical Engineering and Science, Iizuka, Japan<\/p>\n

THE CONTRIBUTION OF ALTERNATIVE TRANSLATION START SITES TO HUMAN PROTEIN DIVERSITY<\/td>\n<\/tr>\n

12.<\/td>\nEfremov R.G.<\/strong><\/p>\n

Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia<\/p>\n

COMPUTER SIMULATIONS OF PEPTIDES AND PROTEINS IN MEMBRANES: PERSPECTIVES IN DRUG DESIGN<\/td>\n<\/tr>\n

13.<\/td>\nShaitan K.V.,\u00a0<\/strong>Tereshkina K.B., Levtsova O.V.<\/p>\n

Department of Bioengineering, Faculty of Biology, M.V.Lomonosov Moscow state University, Moscow, Russia<\/p>\n

MOLECULAR DYNAMICS AND DESIGN OF TRANSMEMBRANE ION CHANNELS<\/td>\n<\/tr>\n

14.<\/td>\nNicklaus M.<\/strong><\/p>\n

Center for Cancer Research, NCI\/NIH, Frederick, MD, USA<\/p>\n

NEW DEVELOPMENTS AT THE NIH FOR INTEGRATION OF SMALL-MOLECULE DATABASES AND BIOINFORMATICS RESOURCES<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

\u00a0<\/strong><\/p>\n

JULY\u00a0<\/strong>20<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

COMPARATIVE AND EVOLUTIONARY GENOMICS AND PROTEOMICS<\/strong><\/h3>\n

ORAL PRESENTATIONS<\/strong><\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
\u2116 \u2116<\/td>\nAUTHOR (S )\u00a0AND TITLE OF A TALK<\/td>\n<\/tr>\n
\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Vitreschak A.G.1<\/sup>*,<\/strong>\u00a0Lyubetsky V.A.1<\/sup>, Gelfand M.S.1<\/sup><\/p>\n

1<\/sup>Institute for Information Transmission Problems of RAS, Moscow, Russia<\/p>\n

EVOLUTIONAL AND FUNCTIONAL ANALYSIS OF T-BOX REGULON IN BACTERIA. IDENTIFICATION AND CHARACTERIZATION\u00a0\u00a0OF NEW GENES INVOLVED IN AMINO ACID METABOLISM<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Bazykin G.A.1<\/sup>*, Dushoff J.1<\/sup>, Levin S.1<\/sup>, Kondrashov A.2<\/sup><\/p>\n

1\u00a0<\/sup>Department. of Ecology and Evolutionary Biology, Princeton University, Princeton, NJ, USA<\/p>\n

2\u00a0<\/sup>National Center for Biotechnology Information, NIH, Bethesda, MD, USA<\/p>\n

INSTANCES OF POSITIVE SELECTION AT CONSERVATIVE PROTEIN<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Gunbin\u00a0K.V.,\u00a0Suslov\u00a0V.V.,\u00a0Kolchanov<\/strong>\u00a0\u00a0<\/strong>N<\/strong>.<\/strong>A<\/strong>.*<\/strong><\/p>\n

Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia<\/p>\n

AROMORPHOSES AND ADAPTIVE MOLECULAR EVOLUTION: MORPHOGENS AND SIGNALING CASCADE GENES<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Kondrashov F.A.<\/strong><\/p>\n

Division of Biological Sciences, University of California, San Diego, La Jolla, CA 92093 USA<\/p>\n

EVOLUTION OF THE GLYOXYLATE CYCLE ENZYMES IN THE METAZOA<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Ramensky V.1*<\/sup><\/strong>,\u00a0\u00a0Nurtdinov R.2<\/sup>, Neverov A.3<\/sup>, Mironov A.\u00a02<\/sup>, Gelfand M.\u00a02,4<\/sup><\/p>\n

1<\/sup>Engelhardt Institute of Molecular Biology of Russian Academy of Sciences, Moscow, Russia,<\/p>\n

2<\/sup>Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia.,<\/p>\n

3<\/sup>State Scientific Center GosNIIGenetika, Russia,<\/p>\n

4<\/sup>Institute for Information Transmission Problems, RAS, Moscow, Russia<\/p>\n

HUMAN GENOME POLYMORPHISM AND ALTERNATIVE SPLICING<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Pintus<\/strong>\u00a0<\/strong>S<\/strong>.<\/strong>S<\/strong>.1*<\/sup>, Fomin E.S.1<\/sup>, Oshurkov\u00a0\u00a0I.S.2<\/sup>, IvanisenkoV.A.1,2<\/sup>*<\/p>\n

1<\/sup>Institute of Cytology and Genetics RAN SB, Novosibirsk, Russia<\/p>\n

2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

PHYLOGENETIC ANALYSIS OF THE P53 AND P63\/P73 GENE FAMILIES<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Sabitha.K\u00a01, 2<\/sup>,\u00a0Kaiser J.1, 2<\/sup>\u00a0*<\/strong><\/p>\n

1<\/sup>Genetics Department, Bhagawan Mahavir Hospital & Research Center, Masab tank, Hyderabad, India<\/p>\n

2,*\u00a0<\/sup>Indo American Cancer Institute & Research Center, Banjara Hills, Hyderabad, India<\/p>\n

ANALYSIS OF EGFR GENE MUTATIONS WHICH HAVE A RESPONSE TO QUINAZOLIN\u00a0\u00a0INHIBITORS<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Deyneko I.V.*1,2<\/sup>, Kalybaeva Y.M.1<\/sup>, Kel A.E.\u00a03<\/sup>, Bl\u00f6cker H.*1<\/sup>, Kauer G.\u00a04<\/sup><\/p>\n

1<\/sup>Department of Genome Analysis, GBF, Braunschweig, Germany,<\/p>\n

2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia;<\/p>\n

3<\/sup>BIOBASE GmbH, Wolfenb\u00fcttel, Germany;\u00a04<\/sup>University of Applied Sciences, Emden, Germany<\/p>\n

HUMAN-CHIMPANZEE PROPERTY-DEPENDANT COMPARISONS ON CHROMOSOMES\u00a0\u00a021<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Ignatieva E.V.*,\u00a0Oshchepkov D.Yu., Klimova N.V., Vasiliev G.V., Merkulova T.I.<\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

ANALYSIS OF REGULATORY REGIONS OF ORTHOLGOUS GENES: PREDICTION OF SF1 BINDING SITES WITH SITECON METHOD PROVED BY EXPERIMENTAL VERIFICATION AND COMPARATIVE GENOMICS<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Kolesnikov N.N.*, Elisafenko E.A,.Zakian S.M<\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

EVOLUTION OF THE STRUCTURE OF THE XIST LOCUS IN MAMMALS<\/td>\n<\/tr>\n

\n
    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Perelygin A.A.*1<\/sup>, Zharkikh A.A.2<\/sup>, Brinton M.A.1<\/sup><\/p>\n

1<\/sup>\u00a0Biology Department, Georgia State University, Atlanta, GA, USA<\/p>\n

2<\/sup>\u00a0Bioinformatics Department, Myriad Genetics, Inc., Salt Lake City, UT, USA<\/p>\n

CONCERTED EVOLUTION OF PARALOGOUS OAS1 GENES IN RODENTIA AND CETARTIODACTYLA<\/td>\n<\/tr>\n

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  1. <\/li>\n<\/ol>\n<\/td>\n
Kapitonov V.V.*<\/strong>, Jurka J.<\/p>\n

Genetic Information Research Institute, Mountain View, California, USA<\/p>\n

NEW KIDS ON THE BLOCK: SELF-SYNTHESIZING\u00a0DNA\u00a0TRANSPOSONS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Simons C., Pheasant M.,\u00a0Makunin I.V.,<\/strong>\u00a0Mattick J.S.*<\/p>\n

ARC Special Research Centre for Functional and Applied Genomics, Institute for Molecular Bioscience, University of Queensland, Brisbane QLD 4072, Australia.<\/p>\n

TRANSPOSON-FREE REGIONS IN MAMMALIAN GENOMES<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Golovnina K.1<\/sup>, Glushkov S.*1<\/sup>,\u00a0Blinov A.<\/strong>1<\/sup>, Mayorov V.2<\/sup>, Adkison L.2\u00a0<\/sup>, Goncharov N.1<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia;<\/p>\n

2<\/sup>Mercer University School of Medicine, Macon, USA<\/p>\n

MOLECULAR PHYLOGENY OF THE GENUS\u00a0TRITICUM L.<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Karafet T. M<\/strong>.1,2*<\/sup>, Lansing J.S.2<\/sup>, Hammer M.F.2<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia;<\/p>\n

2<\/sup>\u00a0University of Arizona, Tucson, USA<\/p>\n

IN SEARCH OF GENETIC SIGNATURE FOR THE EXPANSION OF IRRIGATION SYSTEMS IN BALI<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

\u00a0<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

JULY<\/strong>\u00a020<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

NEW APPROACHES TO BIOMOLECULAR DATA AND PROCESSES\u00a0ANALYSIS\/MODELING<\/strong><\/h3>\n

ORAL PRESENTATIONS<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n\n\n\n\n\n\n\n\n\n\n\n
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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
\n

Mironov A.A.1,2,3<\/sup><\/h2>\n

1<\/sup>Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia.\u00a02<\/sup>Institite for Information Transmission Problems, RAS, Moscow, Russia<\/p>\n

3<\/sup>State Scientific Center GosNIIGenetica, 1st Dorozhny pr., 1, Moscow, 113545, Russia;<\/p>\n

THRESHOLD SELECTION USING THE RANK STATISTICS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Kolpakov F.1,2<\/sup><\/strong>*, Puzanov M.1,2<\/sup>, Koshukov A.1,2<\/sup><\/p>\n

1<\/sup>Institute of Systems Biology OOO, Novosibirsk, Russia<\/p>\n

2<\/sup>Design Technological Institute of Digital Techniques SB RAS, Novosibirsk, Russia<\/p>\n

BIOUML: VISUAL MODELING, AUTOMATED CODE GENERATION AND SIMULATION OF BIOLOGICAL SYSTEMS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Hofest\u00e4dt R.<\/p>\n

Bielefeld University, AG Bioinformatics, Bielefeld, Germany<\/p>\n

AN EXTENDED BACKUS-SYSTEM FOR THE REPRESENTATION AND ANALYSIS OF DNA SEQUENCES<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Mjolsness E.<\/strong><\/p>\n

Institute for Genomics and Bioinformatics, and<\/p>\n

Departments of Computer Science and Mathematics<\/p>\n

University of California, Irvine, CA, USA
\nMODELING TRANSCRIPTIONAL REGULATION WITH EQUILIBRIUM MOLECULAR COMPLEX COMPOSITION<\/td>\n<\/tr>\n

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  1. <\/li>\n<\/ol>\n<\/td>\n
Tatarinova T.1<\/sup><\/strong>, Schumitzky A.2<\/sup><\/p>\n

1<\/sup>Ceres, Inc. Thousand Oaks, California, USA<\/p>\n

2<\/sup>University of Southern California, Los Angeles, USA<\/p>\n

MULTIPLE COLLAPSE CLUSTERING<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Litvinov I. I.1,3*<\/sup>, Finkelshtein A. V.2<\/sup>,\u00a0Roytberg M. A.1,3*<\/sup><\/strong><\/p>\n

1<\/sup>Institute of Mathematical Problems in Biology, Russian Academy of Sciences, Pushchino, Moscow Region, Russia;<\/p>\n

2<\/sup>Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region, Russia<\/p>\n

3<\/sup>Pushchino State University, Pushchino, Moscow Region, Russia<\/p>\n

OPTIMIZATION OF ACCURACY AND CONFIDENCE FOR ALIGNMENT ALGORITHMS EXPLOITING DATA ON SECONDARY STRUCTURE<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Kozlov K.N.*1<\/sup><\/strong>, Samsonov A.M.2<\/sup><\/p>\n

1<\/sup>Department of\u00a0Computational\u00a0Biology, State Polytechnical University, St.Petersburg, Russia<\/p>\n

2<\/sup>A.F. Ioffe Physico-technical Institute of the Russian Academy of Sciences, St.Petersburg, Russia<\/p>\n

NEW MIGRATION SCHEME FOR PARALLEL DIFFERENTIAL EVOLUTION<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Demidenko G.V.*,\u00a0Matveeva I.I.<\/p>\n

Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

ASYMPTOTIC PROPERTIES OF SOLUTIONS OF DIFFERENTIAL-DIFFERENCE EQUATIONS WITH PERIODIC COEFFICIENTS IN LINEAR TERMS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Mateus D.*,\u00a0Gallois J.P.<\/p>\n

CEA\/LIST Saclay, F-91191 Gif sur Yvette Cedex, France<\/p>\n

SEARCHING CONSTRAINTS IN BIOLOGICAL REGULATORY NETWORKS USING SYMBOLIC ANALYSIS<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

\u00a0<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

JULY\u00a0<\/strong>2<\/strong>1<\/strong>-22<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

COMPUTATIONAL SYSTEMS BIOLOGY<\/strong><\/h3>\n

\u00a0<\/strong><\/p>\n

ORAL PRESENTATIONS<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n\n
\u2116 \u2116<\/td>\nAUTHOR (S )\u00a0AND TITLE OF A TALK<\/td>\n<\/tr>\n
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  1. <\/li>\n<\/ol>\n<\/td>\n
Omelianchuk N.A.<\/strong>1<\/sup>*, Mironova V.V.1<\/sup>, Poplavsky A.S.1<\/sup>, Pavlov K.S.1<\/sup>, Savinskaya S.A.2<\/sup>, Podkolodny N.L.1<\/sup>, Mjolsness E.D.3<\/sup>, Meyerowitz E.M.4<\/sup>, Kolchanov N.A.1<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>\u00a0Novosibirsk State University, Novosibirsk, Russia<\/p>\n

3<\/sup>Institute for Genomics and Bioinformatics; University of California, Irvine, CA, USA<\/p>\n

4<\/sup>Division of Biology, California Institute of Technology, Pasadena, CA, USA<\/p>\n

AGNS (ARABIDOPSIS GENENET SUPPLEMENTARY DATABASE), RELEASE 3.0<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Ponomaryov D.1*<\/sup>, Omelianchuk N.2<\/sup>, Mironova V.2<\/sup>, Kolchanov N.2<\/sup>, Mjolsness E.3<\/sup>, Meyerowitz E.4<\/sup><\/p>\n

1\u00a0<\/sup>Institute of Informatics Systems SB RAS, Novosibirsk, Russia<\/p>\n

2\u00a0<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

3<\/sup>\u00a0Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA<\/p>\n

4\u00a0<\/sup>Division of Biology, California Institute of Technology, Pasadena, CA, USA<\/p>\n

A PROGRAM METHOD FOR INFERRING RELATIONSHIPS BETWEEN PHENOTYPIC ABNORMALITIES OF ARABIDOPSIS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Akberdin R<\/strong>.*2<\/sup>, Ozonov E. A.1<\/sup>, Mironova V.V.2<\/sup>, Komarov A.V.1<\/sup>, Omelyanchuk N. A.2<\/sup><\/p>\n

1<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

A CELLULAR AUTOMATON TO MODEL THE DEVELOPMENT OF SHOOT MERISTEMS OF\u00a0ARABIDOPSIS THALIANA<\/em><\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Nikolaev S.V.1<\/sup>*, Fadeev S.I.2<\/sup>, Penenko A.V.2<\/sup>, Belavskaya V.V.1<\/sup>, Kogay V.V.2<\/sup>, Mjolsness E.3<\/sup>, Kolchanov N.A.1,4<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

3<\/sup>School of Information and Computer Science, and Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA<\/p>\n

4<\/sup>Novosibirsk\u00a0State\u00a0University, Novosibirsk, Russia<\/p>\n

CELLULAR-LEVEL MODELLING OF PLANT TISSUE GROWTH AND MORPHOGENESIS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Ratushny A.V.<\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

IN SILICO CELL: HIERARCHICAL APPROACH AND GENERALIZED HILL FUNCTION METHOD FOR GENETIC SYSTEMS AND METABOLIC PATHWAYS MODELING<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Rudenko V.M<\/strong>.*, Korotkov E.V.<\/p>\n

Center of Bioengineering RAS, Moscow, Russia<\/p>\n

CONSTRUCTION OF THE HCV-HEPATOCYTE SYSTEM MODEL<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Rapaport F.1,2<\/sup>, Zinovyev A.1,3<\/sup>*, Barillot E.1<\/sup>, Vert J.-P.2<\/sup><\/p>\n

1<\/sup>Institute Curie, Bioinformatics Service, Paris, France<\/p>\n

2<\/sup>Ecole des Mines de Paris, Center for Computational Biology, Fontainebleau, France<\/p>\n

3<\/sup>Institute of Computational Modelling SB RAS, Krasnoyarsk, Russia<\/p>\n

SPECTRAL ANALYSIS OF GENE EXPRESSION PROFILES USING GENE NETWORKS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Likhoshvai V.A.<\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

MOLECULAR-GENETIC SYSTEMS: SYMMETRY OF STRUCTURE AND DYNAMIC CHAOS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Golubyatnikov V.P.1<\/sup>*, Gaidov Yu.A.2<\/sup>, Kleshchev A.G.1<\/sup>, Volokitin E.P.1<\/sup><\/p>\n

1<\/sup>Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

A GENE NETWORK MODEL WITH DIFFERENT TYPES OF REGULATION<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Khlebodarova T.M.*, Kachko A.V., Stepanenko I.L.,\u00a0Tikunova N.V.<\/strong><\/p>\n

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

DATABASE GenSensor AS INFORMATIONAL SOURCE FOR DESIGN OF BIOSENSORS.\u00a0EXPERIMENTAL DEVELOPMENT OF BIOSENSOR BASED ON YfiA GENE<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Matveeva A.<\/strong>*, Kozlov K., Samsonova M.G.<\/p>\n

Department of Computational Biology, Center for Advanced Studies, St. Petersburg State Polytechnical University, St. Petersburg, Russia<\/p>\n

METHODOLOGY FOR BUILDING OF COMPLEX WORKFLOWS WITH PROSTAK PACKAGE AND ISIMBIOS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Gunbin\u00a0\u041a.V.1<\/sup>*, Kogai V.V.2<\/sup>, Fadeev S.I.2<\/sup>,\u00a0Omelyanchuk L.V.<\/strong>1<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

A MODEL FOR SENSING THE MORPHOGENE HEDGEHOG CONCENTRATION GRADIENT<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Galimzyanov A.V.<\/strong><\/p>\n

Department of Physicochemical Biology\u00a0&\u00a0Epigenetics, Ufa Research Center RAS, Ufa, Russia<\/h3>\n

GENE NETWORKS BEHAVIOR IN A SERIES OF SUCCESIVE CELL DIVISIONS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Milanesi L.<\/strong>1<\/sup>*, Alfieri R.1<\/sup>, Merelli I.1<\/sup><\/p>\n

1<\/sup>CNR Institute of Biomedical Technologies, Milan, Italy<\/p>\n

HCCDB: DATA MINING SYSTEM FOR HUMAN CELL CYCLE GENE<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Olsson B.*,\u00a0Gawronska B., Erlendsson B., Lindl\u00f6f A., Dura E.<\/p>\n

School of Humanities and Informatics, University of Sk\u00f6vde, Sweden<\/p>\n

AUTOMATED TEXT ANALYSIS OF BIOMEDICAL ABSTRACTS APPLIED TO THE EXTRACTION OF SIGNALING PATHWAYS INVOLVED IN PLANT COLD-ADAPTATION<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Aman E.E.1<\/sup><\/strong>, Demenkov P.S.2<\/sup>, Pintus S.S.3<\/sup>, Nemiatov A.I.3<\/sup>, Apasieva N.V.1<\/sup>, Korotkov R.O.\u00a03<\/sup>, Ignatieva E.V.1<\/sup>, Podkolodny N.L.1<\/sup>, Ivanisenko V.A.*1<\/sup><\/p>\n

1\u00a0<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>\u00a0Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

3<\/sup>\u00a0Novosibirsk State University, Novosibirsk, Russia<\/p>\n

A COMPUTER SYSTEM FOR THE AUTOMATED RECONSTRUCTION OF MOLECULAR-GENETIC INTERACTION NETWORKS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Kouznetsova T.N.1<\/sup>*, Ignatieva E.V.1<\/sup>, Oshchepkov D.Yu.1<\/sup>, Kondrakhin Y.V.1<\/sup>, Katokhin A.V.1,2<\/sup>, Shamanina M.Y.1<\/sup>,\u00a0Mordvinov V.A.<\/strong>1<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

A GENE NETWORK OF ADIPOCYTE LIPID METABOLISM: COORDINATED INTERACTIONS BETWEEN THE TRANSCRIPTION FACTORS SREBP, LXRa\u00a0AND PPARg<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Bezmaternykh K.D.<\/strong>2*<\/sup>, Nikulichev Yu.V.1<\/sup>, Likhoshvai V.A.2<\/sup>, Matushkin Yu.G.2<\/sup>, Latipov A.F.1<\/sup>, Kolchanov N.A.2<\/sup><\/p>\n

1<\/sup>Institute of Theoretical and Applied Mechanics SB RAS, Novosibirsk, Russia<\/p>\n

2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

OPTIMAL CONTROL TASKS IN TERMS OF THE GENE NETWORK MODELS<\/td>\n<\/tr>\n

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    \n
  1. <\/li>\n<\/ol>\n<\/td>\n
Kolchanov N.A.1<\/sup>*,\u00a0Orlova G.V.1<\/sup><\/strong>, Bachinsky A.G.2<\/sup>, Bajan S.I.2<\/sup>, Shvarts Ya.Sh\u00a03<\/sup>, Golomolzin V.V.1<\/sup>, Popov D.Yu.1<\/sup>, Efimov V.M.5<\/sup>, Tololo I.V.6<\/sup>, Ananko E.A.1<\/sup>, Podkolodnaya O.A.1<\/sup>, Il\u2019ina E.N.\u00a04<\/sup>, Rogov S.I.\u00a04<\/sup>, Tretiakov V.E.\u00a04<\/sup>, Kubanova A.A.7<\/sup>, Govorun V.M.4<\/sup><\/p>\n

1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk;<\/p>\n

2<\/sup>The State Research Center of Virology and Biotechnology VECTOR, Novosibirsk;<\/p>\n

3<\/sup>Institute of Internal Medicine SB RAMS, Novosibirsk;<\/p>\n

4<\/sup>Institute of Physical and Chemical Medicine MZ RF, Moscow;<\/p>\n

5<\/sup>Institute of Animal Taxonomy and Ecology SB RAS, Novosibirsk;<\/p>\n

6<\/sup>Institute of Automation and Electrometry SB RAS, Novosibirsk;<\/p>\n

7<\/sup>Central Research Institute of Dermatovenerology MZ RF, Moscow<\/p>\n

EPI-GIS: GIS ASSISTED COMPUTER TOOLS FOR DATA ACCUMULATION, COMPUTER ANALYSIS AND MODELING IN MOLECULAR EPIDEMIOLOGY<\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n

\u00a0<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

JULY 19<\/strong><\/p>\n

\u00a0<\/strong><\/p>\n

PROGRAM OF POSTER PRESENTATIONS AND COMPUTER DEMONSTRATIONS<\/strong><\/h2>\n

\u00a0<\/strong><\/p>\n

Poster Size: The maximum size allowed for each poster<\/p>\n

is 0.7m wide X 1.2m high.<\/p>\n

Please note that this is a portrait (vertical) poster.<\/p>\n

\u00a0<\/strong><\/p>\n

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  1. \n

    COMPUTATIONAL STRUCTURAL AND FUNCTIONAL GENOMICSAND TRANSCRIPTOMICS<\/strong><\/h3>\n<\/li>\n<\/ol>\n

    \u00a0<\/strong><\/p>\n

    POSTER PRESENTATIONS<\/strong><\/p>\n

    Abnizova I.1<\/sup>, Walter K.1<\/sup>, Rene te Boekhorst2\u00a0<\/sup>, Gilks W.R.1<\/sup><\/p>\n

    1<\/sup>Biostatistics Unit MRC, Institute of Public Health, Robinson Way, Cambridge, UK<\/p>\n

    NEW WAY TO OBTAIN A REGULATORY MOTIF REPRESENTATION DUE TO MOTIF ABUNDANCE LEVEL<\/p>\n

    Ananko\u00a0E.A.*,\u00a0Kondrakhin\u00a0Yu.V.,\u00a0Merkulova\u00a0T.I.<\/p>\n

    Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    PREDICTION OF INTERFERON-INDUCIBLE GENES IN HUMAN GENOME<\/p>\n

    Apasyeva N.V.\u00a01<\/sup>, Yudin N.S.1*<\/sup>, Ignatieva E.V.\u0430\u0432\u0443\u044c\u0448\u0432\u0443\u0442\u043b\u04491<\/sup>, Voevoda M.I.1,2<\/sup>, Romashenko A.G.1<\/sup><\/p>\n

    1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia;<\/p>\n

    2<\/sup>\u00a0Institute of Therapeutics SB RAMS, Novosibirsk, Russia<\/p>\n

    A DATABASE DESIGNED FOR THE POLYMORPHISMS OF THE HUMAN\u00a0CCR2<\/em>\u00a0GENE.<\/p>\n

    Atambaeva S.A., Ivashchenko A.T.*, Khailenko V., Boldina G., Turmagambetova A.<\/p>\n

    al-Farabi Kazakh National University, Almaty, Kazakhstan<\/p>\n

    LENGTH OF EXONS AND INTRONS IN GENES OF SOME HUMAN CHROMOSOMES<\/p>\n

    \u00a0<\/strong><\/p>\n

    Atambaeva S.A., Ivashchenko A.T.*<\/p>\n

    al-Farabi Kazakh National University, Almaty, Kazakhstan<\/p>\n

    THE LENGTH OF EXONS AND INTRONS IN GENES OF\u00a0ARABIDOPSIS THALIANA<\/em>\u00a0AND\u00a0CAENORHABDITIS ELEGANS<\/em><\/p>\n

     <\/p>\n

    Califano A.1<\/sup>, Margolin A.1<\/sup>, Fust A.1<\/sup>, Floratos A.1<\/sup>, Badii B.1<\/sup>, Daly E.1<\/sup>, Kim F.1<\/sup>, Ahmady H.1<\/sup>, Nemenman I.1,2<\/sup>, Watkinson J.1<\/sup>,\u00a0\u00a0Wang K.1<\/sup>, Smith K.1<\/sup>, Kustagi M.1<\/sup>, Hall M.1<\/sup>, Banerjee N.1<\/sup>,\u00a0\u00a0Morozov P.S.1<\/sup>, Hanasoge S.1<\/sup>, Zhang X.1<\/sup>, Wang X.1<\/sup>, Li Z.1<\/sup>
    \n1<\/sup>Joint Centers for Systems Biology at Columbia University<\/p>\n

    2<\/sup>Los Alamos National Laboratory, Los Alamos, USA
    \ngeWorkbench: a Bioinformatic Platform for Integrated Genomics<\/p>\n

     <\/p>\n

    Cheremushkin E.1,2<\/sup>, Konovalova T.1,3<\/sup>, Valeev T.1,2<\/sup>, Shtokalo D.1,4*<\/sup>, Taraskina A.1,4<\/sup><\/p>\n

    1<\/sup>Biorainbow Group, Novosibirsk, Russia,<\/p>\n

    2<\/sup>Ershov Institute of Informatics Systems, Novosibirsk, Russia;\u00a0\u00a0<\/sup><\/p>\n

    3<\/sup>Institute Of Cytology And Genetics, Novosibirsk, Russia;<\/p>\n

    4<\/sup>Mechanics and Mathematics Department, Novosibirsk State University, Novosibirsk, Russia<\/p>\n

    CISSEARCH: SOFTWARE PACKAGE FOR ANALYSIS OF GENE REGULATORY SEQUENCES<\/p>\n

    Katyshev A.I.1<\/sup>, Rogozin I.B.2<\/sup>, Konstantinov Yu.M.1<\/sup>*<\/p>\n

    1<\/sup>Siberian Institute of Plant Physiology and Biochemistry SB RAS, Irkutsk, Russia<\/p>\n

    2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    EST ANALYSIS ALLOWS TO IDENTIFY NEW SUPEROXIDE DISMUTASE GENE TRANSCRIPTS IN PLANTS AND TO ESTIMATE ALTERNATIVE POLYADENILATION AND ALTERNATIVE SPLICING EVENTS IN SOD GENE TRANSCRIPTS<\/p>\n

     <\/p>\n

    Kayumov A.R.*, Kirillova J. M., Mikhailova E. O., Balaban N.P., Sharipova M.R.<\/h2>\n

    Kazan State University, Kazan, Russia<\/p>\n

    THE PREDICTION OF REGULATION OF SUBTILISIN-LIKE PROTEINASE GENE FROM\u00a0BACILLUS INTERMEDIUS<\/em>\u00a0THROUGH ITS REGULATORY SEQUENCE ANALYSIS<\/p>\n

    \u00a0<\/strong><\/p>\n

    Khomicheva I.V.*, Levitsky V.G.,\u00a0Omelianchuk N.A., Ponomarenko M.P.<\/p>\n

    Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    PATTERN OF LOCALLY POSITIONED DINUCLEOTIDES RELATES TO MICRORNA EXPRESSION LEVELS<\/p>\n

    \u00a0<\/strong><\/p>\n

    Khomicheva I.V.1<\/sup>, Levitsky V.G.1<\/sup>, Vishnevsky O.V.1<\/sup>, Savinskaya S.A.2<\/sup>\u00a0Omelyanchuk N.A.1<\/sup><\/p>\n

    1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    2<\/sup>\u00a0Novosibirsk State University, Novosibirsk, Russia<\/p>\n

    IDENTIFICATION OF\u00a0ARABIDOPSIS THALIANA<\/em>\u00a0MICRORNAs AMONG MPSS SIGNATURES<\/p>\n

    Khomicheva I.V.*1,2<\/sup>, Vityaev E.E.2<\/sup>, Shipilov T.I.2<\/sup>, Levitsky V.G.1<\/sup><\/p>\n

    1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia,<\/p>\n

    2<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

    TRANSCRIPTION FACTOR BINDING SITES RECOGNITION BY THE EXPERTDISCOVERY SYSTEM BASED ON THE RECURSIVE COMPLEX SYGNALS<\/p>\n

    Kolchanov N.A.*, Podkolodnaya O.A., Ananko E.A., Ignatieva E.V., Stepanenko I.L., Khlebodarova T.M., Merkulov V.M., Merkulova T.I., Podkolodny N.L., Romashchenko A.G.<\/p>\n

    Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    TRRD: A DATABASE ON EXPERIMENTALLY IDENTIFIED TRANSCRIPTION REGULATORY REGIONS AND TRANSCRIPTION FACTOR BINDING SITES<\/p>\n

    Kondrakhin\u00a0Yu.V.*,\u00a0Ananko\u00a0E.A.,\u00a0Merkulova\u00a0T.I.<\/p>\n

    Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    METHODS FOR RECOGNITION OF INTERFERON-INDUCIBLE SITES, PROMOTERS, AND ENHANCERS<\/p>\n

    Lyubetskaya E.V., Seliverstov A.V.*, Lyubetsky V.A.<\/p>\n

    Institute for Information Transmission Problems RAS, Moscow, Russia,<\/p>\n

    DETECTING HAiRPINS IN 3\u2019-UNTRANSLATED REGIONS OF HIGHLY EXPRESSED GENES IN ACTINOBACTERIA<\/p>\n

    Martin D.1<\/sup>, Portales-Casamar E.1<\/sup>, Kirov S.2<\/sup>, Lim J.1<\/sup>, Brumm J.1<\/sup>, Snoddy J.2<\/sup>, Wasserman W.W.1*<\/sup>
    \n1<\/sup>Centre for Molecular Medicine and Therapeutics, CFRI, University of British Columbia, Vancouver, BC, CANADA
    \n2<\/sup>Biomedical Informatics Dept, Vanderbilt University School of Medicine, Nashville, TN, USA<\/p>\n

    *<\/sup>\u00a0Corresponding author : wyeth@cmmt.ubc.ca<\/p>\n

    USING BIOLOGICAL KNOWLEDGE IN COMPUTATIONAL METHODS TO DISCOVER MECHANISMS OF TRANSCRIPTION REGULATION<\/p>\n

    Merkulov V.M.*, Merkulova\u00a0T.I.<\/p>\n

    Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    STRUCTURAL VARIANTS OF BINDING SITES FOR GLUCOCORTICOID RECEPTOR AND THE MECHANISMS OF GLUCOCORTICOID REGULATION: ANALYSIS OF GR-TRRD DATABASE<\/p>\n

    <\/h2>\n

    Mitra C.K.<\/h2>\n

    School of Life Sciences, University of Hyderabad, Hyderabad, India<\/p>\n

    STUDIES ON TRANSCRIPTIONAL REGULATION IN DNA<\/h1>\n

    Morozov P.S.1<\/sup>, Morozova I.N.2<\/sup>, Pompu S.2<\/sup>, Shuman H.3<\/sup>, Kalachikov S.M.2<\/sup>
    \n1<\/sup>Joint Centers for Systems Biology, Columbia University, New York, USA
    \n2<\/sup>Columbia Genome Center, Columbia University, New York, USA
    \n3<\/sup>Department of Microbiology, Columbia University, New York, USA
    \nUnique Oligotide Based Microarray Design for the Study of Gene Expression of the Accidental Human Pathogen Legionella pneumophila.<\/p>\n

    Ogurtsov A.Yu.1<\/sup>*,\u00a0\u00a0Vasilchenko A.S.2<\/sup>, Vlasov P.K.3<\/sup>, Shabalina S.A.1<\/sup>, Kondrashov A.S.1<\/sup>, Roytberg M.A.2<\/sup>*<\/p>\n

    1<\/sup>\u00a0National Center for Biotechnology Information, NIH, Bethesda, MD, USA<\/p>\n

    2<\/sup>\u00a0Institute of Mathematical Problems in Biology, Pushchino, Moscow Region, Russia<\/p>\n

    2<\/sup>\u00a0Institute of Molecular Biology, Moscow, Russia<\/p>\n

    OWEN-SCRIPT \u2013 AN EXTENDED TOOL FOR PAIRWISE GENOME ALIGNMENT<\/p>\n

    Proskura A.L.1*<\/sup>, Levitsky V.G.1,2<\/sup>, Ignatieva E.V1,2<\/sup>.<\/p>\n

    1<\/sup>Institute of Cytology and Genetics SB RAS,\u00a0Novosibirsk, Russia<\/p>\n

    2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

    THE ANALYSIS OF SREBP BINDING SITES DISTRIBUTION IN GENE REGIONS BY COMBINED SITEGA AND PWM APPROACH<\/h4>\n

    Ramachandran S.*<\/sup>, Vineet Kumar Sharma, Anu Sharma, Samir K. Brahmachari<\/p>\n

    G.N. Ramachandran Knowledge Centre for Genome Informatics, Institute of Genomics and Integrative Biology, Delhi, India<\/p>\n

    SIMPLE SEQUENCE (TG\/CA)n<\/sub>\u00a0REPEATS AS\u00a0CIS\u00a0MODULATORS OF GENE EXPRESSION<\/p>\n

    Ryazansky S.S.*<\/sup><\/p>\n

    Institute of Molecular Genetics RAS, Moscow, Russia<\/p>\n

    IDENTIFICATION OF microRNAs ENCODED BY DROSOPHILA TRASPOSABLE ELEMENTS<\/p>\n

    \u00a0<\/strong><\/p>\n

    Seliverstov A.V.*, Lyubetsky V.A.<\/p>\n

    Institute for Information Transmission Problems RAS, Moscow, Russia<\/p>\n

    TRANSLATION REGULATION IN CHLOROPLASTS<\/p>\n

    \u00a0<\/strong><\/p>\n

    Shagimardanova E.I.*, Shamsutdinov T.R., Chastuchina I.B., Sharipova M.R.<\/p>\n

    Kazan State University, Kazan, Russia<\/p>\n

    ANALYSIS OF REGULATORY REGION OF\u00a0BACILLUS INTERMEDIUS<\/em>\u00a0GLUTAMYL ENDOPEPTIDASE GENE<\/p>\n

    Shavkunov K.S.\u00a01<\/sup>, Masulis I.S.\u00a01<\/sup>, Matushkin Yu.G.2<\/sup>, Ozoline O.N.1<\/sup>*<\/p>\n

    1<\/sup>Institute of Cell Biophysics RAS, Pushchino, Moscow region, Russian Federation<\/p>\n

    2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russian Federation<\/p>\n

    Alternative transcription within PROCaryotic genes<\/p>\n

     <\/p>\n

    Smetanin D.V.*, Chumak N.M.<\/p>\n

    Krasnodar Research Institute of Agriculture, Krasnodar, Russia<\/p>\n

    A STEP BEYOND PLANT TRANSCRIPT`S POLYADENYLATION SITE<\/p>\n

     <\/p>\n

    Smirnova O.G.*, Ibragimova S.S., Grigorovich D.A., Kochetov A.V.<\/p>\n

    Institute of Cytology and Genetics, Novosibirsk, Russia<\/p>\n

    *Corresponding author: planta@bionet.nsc.ru<\/p>\n

    TGP (Transgene Promoters): A DATABASE OF\u00a0BIOTECHNOLOGICALLY IMPORTANT PLANT GENE PROMOTERS<\/p>\n

    Stavrovskaya E.D.1,2, *<\/sup>, Makeev V.J.3<\/sup>, Merkeev I.V.3<\/sup>,\u00a0\u00a0Mironov A.A.1,2,3<\/sup><\/p>\n

    1<\/sup>Institute for Information Transmission Problems RAS, Moscow, Russia<\/p>\n

    2<\/sup>Department of Bioengineering and Bioinformatics, Moscow State University, Moscow, Russia<\/p>\n

    3<\/sup>State Scientific Center GosNIIGenetica, Moscow, Russia<\/p>\n

    TOOL FOR AUTOMATIC DETECTION OF CO-REGULATED GENES<\/p>\n

    \u00a0<\/strong><\/p>\n

    TaraskinaA.S.\u00a01,3<\/sup>, Cheremushkin E.S.2,3<\/sup><\/p>\n

    1<\/sup>Mechanics and Mathematics Department, Novosibirsk State University, Novosibirsk, Russia<\/p>\n

    2<\/sup>Biorainbow Group, Novosibirsk, Russia<\/p>\n

    3<\/sup>Ershov Institute of Informatics Systems, Novosibirsk, Russia<\/p>\n

    THE MODIFIED FUZZY C- MEANS METHOD FOR CLUSTERING OF MICROARRAY DATA<\/p>\n

    Titov I.I.1,2<\/sup><\/p>\n

    1<\/sup>\u00a0Institute of Cytology and Genetics SD RAS, Novosibirsk, Russia<\/p>\n

    2<\/sup>\u00a0Novosibirsk State University, Russia<\/p>\n

    THE GARNA TOOLBOX FOR RNA STRUCTURE ANALYSIS: THE 2006 STATE OF THE ART<\/p>\n

    Titov I.I.1,2*<\/sup>, Ivanisenko A.Yu.2<\/sup><\/p>\n

    1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

    A MODEL OF THE TRANSLATIONAL INHIBITION BY MIRISC COMPLEX DESCRIBES PROTEIN SYNTHESIS VARIATIONS INDUCED BY MUTATIONS IN MAMMALIAN MIRNA SITES<\/p>\n

    Vladimirov N.V.1*<\/sup>, Likhoshvai\u00a0<\/sup>V.A.1<\/sup>, Matushkin Yu.G.1<\/sup><\/p>\n

    1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    ROLES OF CODON BIASES AND POTENTIAL SECONDARY STRUCTURES IN mRNA\u00a0TRANSLATION OF UNICELLULAR ORGANISMS<\/p>\n

    Vladimirov N.V.1*<\/sup>, Kochetov A.V.1<\/sup>, Grigorovich D.A.1<\/sup>, Matushkin Yu.G.1<\/sup><\/p>\n

    1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    RSCU_COMPARER: A NEW STATISTICAL TOOL FOR PRACTICAL CODON USAGE ANALYSIS<\/p>\n

    Vityaev\u00a0\u0415.E.*1,2<\/sup>,\u00a0Lapardin\u00a0K.A.2<\/sup>,\u00a0Khomicheva\u00a0I.V.3<\/sup>,\u00a0Levitsky\u00a0V.G.2,3<\/sup><\/p>\n

    1<\/sup>Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

    2<\/sup>Novosibirsk state university, Novosibirsk, Russia<\/p>\n

    3<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    TRANSCRIPTION FACTOR BINDING SITES RECOGNITION BY THE REGULARITIES MATRICES BASED ON THE NATURAL CLASSIFICATION METHOD<\/p>\n

    Zagoruiko N.G.\u00a01<\/sup>*, Kutnenko O.A.\u00a01<\/sup>, I.A. Borisova V.A.\u00a01<\/sup>, Kiselev A.N.\u00a01<\/sup>, Ptitsyn A.A.2<\/sup><\/p>\n

    1<\/sup>Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

    2<\/sup>\u00a0Pennington Biomedical Research Center, Baton Rouge LA 70808, USA<\/p>\n

    SELECTION OF INFORMATIVE SUBSET OF GENE EXPRESSION PROFILES IN PROGNOSTIC ANALYSIS OF TYPE II DIABETES<\/p>\n

     <\/p>\n

    COMPUTER DEMONSTRATIONS<\/p>\n

     <\/p>\n

    Vishnevsky O.V.1,2<\/sup>*, Konstantinov Yu.M.3<\/sup><\/p>\n

    1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

    3<\/sup>Siberian Institute of Plant Physiology and Biochemistry SB RAS, Irkutsk, Russia<\/p>\n

    ANALYSIS OF THE NUCLEOTIDE CONTEXT OF HIGHER PLANT MITOCHONDRIAL mRNA EDITING SITES<\/p>\n

    <\/h1>\n

    2. COMPUTATIONAL STRUCTURAL AND FUNCTIONAL PROTEOMICS<\/h3>\n

    POSTER PRESENTATIONS<\/strong><\/p>\n

    Afonnikov D.A.1,2<\/sup>, Morozov A.V.1<\/sup><\/p>\n

    1\u00a0<\/sup>Institute of Cytology and Genetics RAS, Novosibirsk, Russia<\/p>\n

    2\u00a0<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

    CONNP: WWW SERVER for the prediction of the contact numbers of the amino acid residues in proteins<\/p>\n

    Aman E.E. *, Demenkov P.S., Ivanisenko V.A.<\/p>\n

    Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

    ANALYSIS OF THE TERTIARY STRUCTURE OF THE PPAR AND RXR TRANSCRIPTIONAL FACTORS AND THEIR MUTANT VARIANTS<\/p>\n

    Bakulina\u00a0A.Yu.*1<\/sup>,\u00a0Sineva\u00a0E.V.2<\/sup>,\u00a0Solonin\u00a0A.S.2<\/sup>,\u00a0Maksyutov\u00a0A.Z.1<\/sup><\/p>\n

    1<\/sup>State Research Center of Virology and Biotechnology \u201cVector\u201d, Koltsovo, Novosibirsk<\/p>\n

    region, Russia.<\/p>\n

    2<\/sup>Institute of Biochemistry and Physiology of Microorganisms, Russian Academy of Sciences, Pushchino, Moscow Region, Russia<\/p>\n

    MOLECULAR MODELING OF B. CEREUS HEMOLYSIN II, A PORE-FORMING PROTEIN<\/p>\n

    Baryshev\u00a0P.B.1*<\/sup>,\u00a0Afonnikov\u00a0D.A.1,2<\/sup>,\u00a0Nikolaev\u00a0S.V.2<\/sup><\/p>\n

    1<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

    2<\/sup>Institute of Cytology and Genetics RAS, Novosibirsk, Russia<\/p>\n

    Identification and structure-functional analysis of the specificity determining residues of the alpha subunits of the proteosomal complex<\/p>\n

    Batsianovsy A.V.*, Vlasov P.K.<\/p>\n

    Engelhard Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia;<\/p>\n

    *Moscow State University, Vorob\u2019evy Gory, Moscow, Russia;<\/p>\n

    CLUSTERING ANALYSIS OF CONFORMATIONAL STRUCTURES OF SHORT OLIGOPEPTIDES<\/p>\n

    Efimov A.V., Brazhnikov E.V., Kondratova M.S.<\/h1>\n

    Institute of Protein Research, Russian Academy of Sciences, Pushchino, Moscow Region, Russia<\/p>\n

    EFFECT OF THE STRUCTURAL CONTEXT ON SPECIFICITY OF INTRA- AND INTERHELICAL INTERACTIONS IN PROTEINS<\/p>\n

    Dulko V., Feranchuk S.<\/p>\n

    United Institute of Informatics Problems of the National Academy of Sciences of Belarus<\/strong>, Minsk, Belarus<\/p>\n

    DYNAMIC PROGRAMMING ALGORITHM PARALLIZATION FOR PROTEIN FOLDING<\/p>\n

    Gou Z., Hwang S., Kuznetsov I.B.*<\/p>\n

    Gen*NY*sis Center for Excellence in Cancer Genomics, University at Albany, Rensselaer, NY, USA<\/p>\n

    SEQUENCE-BASED PREDICTION OF DNA-BINDING SITES ON DNA-BINDING PROTEINS<\/p>\n

    Ivanisenko V.A.1,2*<\/sup>, Ivanisenko T.V.3<\/sup>, Sharonova I.V.2<\/sup>, Krestyanova M.A.2<\/sup>, Ivanisenko N.V.2<\/sup>, Grigorovich D.A.1<\/sup><\/p>\n

    1<\/sup>\u00a0Institute of Cytology and Genetics SB RAN, Novosibirsk, Russia<\/p>\n

    2<\/sup>\u00a0Novosibirsk State University, Novosibirsk, Russia<\/p>\n

    3<\/sup>\u00a0Siberian State University of Telecommunications and Information Sciences, Novosibirsk, Russia<\/p>\n

    PDBSite DATABASE\u00a0AND PDBSiteScan TOOL: RECOGNITION\u00a0OF FUNCTIONAL SITES IN PROTEIN 3d STRUCTURE AND TEMPLATE-BASED DOCKING<\/p>\n

    Konshina A.G.*,\u00a0Dubinnyi M.A., Efremov R.G.<\/p>\n

    Shemyakin\u2013Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia<\/p>\n

    STRUCTURAL DETERMINANTS OF CARDIOTOXINS\u2019 MEMBRANE BINDING: A MOLECULAR MODELING\u00a0\u00a0APPROACH<\/p>\n

    NizolenkoL. Ph.1<\/sup>*, Bachinsky A.G.\u00a01<\/sup>, YaryginA. A.1<\/sup>, Naumochkin A.N.1<\/sup>, Grigorovich D.A.2<\/sup><\/p>\n

    1<\/sup>SRC VB \u201cVector\u201d, Koltsovo, Novosibirsk, Russia.<\/p>\n

    2<\/sup>\u00a0Institute of Cytology and Genetics, Novosibirsk, Russia<\/p>\n

    PROF_PAT: THE UPDATED DATABASE OF PROTEIN FAMILY PATTERNS. CURRENT\u00a0\u00a0STATUS<\/p>\n

    Nyporko A.Yu.*, Blume Ya. B.<\/p>\n

    Institute of Cell Biology and Genetic Engineering of NAS of Ukraine, Kiev, Ukraine<\/p>\n

    dfnalex@univ.kiev.ua<\/p>\n

    THE FEATURES OF STRUCTURAL DYNAMICS OF DIFFERENT TUBULIN SUBUNITS<\/p>\n

    Pyrkov T.V.*1,2<\/sup>, Kosinsky Yu.A.1<\/sup>, Arseniev A.S.1<\/sup>, Priestle J.P.3<\/sup>, Jacoby E.3<\/sup>, Efremov R.G.1<\/sup><\/p>\n

    1<\/sup>M.M. Shemyakin & Yu. A. Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia<\/p>\n

    2<\/sup>Moscow Institute of Physics and Technology, Moscow, Russia<\/p>\n

    3<\/sup>Novartis\u00a0Institutes for Biomedical Research, Basel, Swizerland<\/p>\n

    COMBINING MOLECULAR DOCKING WITH RECEPTOR DOMAIN MotIONS: SIMULATIONS OF BINDING OF ATP TO CA-ATPASE<\/p>\n

     <\/p>\n

    Shaytan A.K.*, Khokhlov A.R., Ivanov V.A.<\/p>\n

    Chair of Polymer and Crystal Physics, Physics Department, Moscow State University, Moscow, Russia<\/p>\n

    PEPDITE DYNAMICS AT WATER MEMBRANE INTERFACE<\/p>\n

    P.V.Troshin1*<\/sup>, M.Z. Papiz1<\/sup>, S.M. Prince2<\/sup>,\u00a0<\/sup>E. J. Daniel3<\/sup>, C. Morris3*<\/sup>,\u00a0\u00a0S.L.Griffiths4<\/sup>, J. M. Diprose5<\/sup>, K. Pilicheva5<\/sup>, J. v. Niekerk6<\/sup>, A. Pajon7<\/sup><\/p>\n

    1*<\/sup>\u00a0Membrane Protein Structure Initiative, CCLRC Daresbury Laboratory, UK.
    \n2\u00a0<\/sup>Faculty of Life Sciences, University of Manchester, Sackville St., Manchester, UK.<\/p>\n

    3<\/sup>\u00a0Protein information management system, CCLRC Daresbury Laboratory, UK.
    \n4<\/sup>\u00a0York Structural Biology Laboratory, University of York, UK.<\/p>\n

    5<\/sup>\u00a0Oxford Protein Production Facility, Division of Structural Biology,
    \nUniversity of Oxford, UK.<\/p>\n

    6<\/sup>\u00a0Scottish Structural Proteomics Facility, University of Dundee, UK
    \n7<\/sup>\u00a0European Bioinformatics Institute, Hinxton, UK.<\/p>\n

    LABORATORY INFORMATION MANAGEMENT SYSTEM FOR MEMBRANE PROTEIN STRUCTURE INITIATIVE<\/p>\n

    Volkova\u00a0<\/sup>O.A.1<\/sup>, Kochetov A.V.1*<\/sup><\/p>\n

    1<\/sup>Institute of Cytology and Genetics, Novosibirsk, Russia<\/p>\n

    AMINO ACID PREFERENCES AT THE N-TERMINAL PART OF EUKARYOTIC PROTEINS CORRELATING WITH A SPECIFIC CONTEXTUAL ORGANIZATION OF TRANSLATION INITIATION SIGNAL<\/p>\n

    \u00a0<\/strong><\/p>\n

      \n
    1. \n

      COMPARATIVE AND EVOLUTIONARY GENOMICS AND PROTEOMICS<\/strong><\/h3>\n<\/li>\n<\/ol>\n

      \u00a0<\/strong>POSTER PRESENTATIONS<\/strong><\/p>\n

      \u00a0<\/strong><\/p>\n

      Babkin I.V.*, Shchelkunov S.N.<\/p>\n

      State Research Center of Virology and Biotechnology Vector, Koltsovo, Novosibirsk oblast, Russia<\/p>\n

      TIME SCALE OF POXVIRUS EVOLUTION<\/p>\n

      Boeva V.A.*1<\/sup>, Makeev V.J.2<\/sup><\/p>\n

      1<\/sup>Moscow State University, Department of bioengineering and bioinformatics, Moscow, Russia<\/p>\n

      2<\/sup>GosNIIGenetika State Research Center, Moscow, Russia<\/p>\n

      Micro- and Minisatellites in Human genome, Tandemswan software in use<\/p>\n

      Brinza D., Perelygin A., Brinton M., Zelikovsky A.*<\/p>\n

      Georgia State University, Atlanta, GA, USA<\/p>\n

      SEARCH FOR MULTI-SNP DISEASE ASSOCIATION<\/p>\n

      Bukin\u00a0Y.S.*,\u00a0Pudovkina\u00a0T.A.<\/p>\n

      Limnological Institute of SB RAS, Irkutsk, Russia<\/p>\n

      THE MODELS OF POPULATION DYNAMICS AS TOOL FOR STUDYING OF GENETIC POLYMORPHISM OF BAIKALIAN POLYCHAETS<\/h1>\n

      <\/h1>\n

      Chumakov\u00a0M.I.,\u00a0Mazilov\u00a0S.,\u00a0Zotova\u00a0T.V.<\/h1>\n

      Institute of Symbiology, Russian Academy of Sciences, 13 Prospekt Entuziastov, Saratov 410049, Russia<\/p>\n

      SEARCHING FOR NUCLEOTIDE SEQUENCES LIKE AGROBACTERIAL T-DNA RIGHT BORDER IN PLANT GENOMES<\/p>\n

      \u00a0<\/strong><\/p>\n

      Golovnina K.*1<\/sup>, Blinov A.1<\/sup>, Chang L.-S.2<\/sup><\/p>\n

      1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia;<\/p>\n

      2<\/sup>Center for Childhood Cancer, Children\u2019s Research Institute, Children\u2019s Hospital and Department of Pediatrics,<\/p>\n

      \u00a0\u00a0\u00a0The Ohio State University, USA<\/p>\n

      EVOLUTION AND ORIGIN OF NEUROFIBROMIN, THE PRODUCT OF THE NEUROFIBROMATOSIS TYPE 1 (NF1) TUMOR-SUPRESSOR GENE<\/p>\n

      \u00a0<\/strong><\/p>\n

      Gorbunov K.Yu.*, Lyubetsky V.A.<\/p>\n

      Institute for Information Transmission Problems of the Russian Academy of Sciences, Moscow, Russia<\/p>\n

      inferring regulatiory signal profiles and evolutionary events<\/p>\n

      Gunbin K.V., Morozov A.V., Afonnikov D.A.<\/p>\n

      Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

      A METHOD FOR SEMIAUTOMATED ANALYSIS OF GENE EVOLUTION<\/p>\n

      \u00a0<\/strong><\/p>\n

        \n
      1. Guryev1*<\/sup>, B.M.G. Smits1<\/sup>, J. van de Belt1<\/sup>, M. Verheul1<\/sup>, N. Hubner2<\/sup>and E. Cuppen1<\/sup><\/li>\n<\/ol>\n

        1<\/sup>\u00a0Hubrecht Laboratorium, Uppsalalaan 8, 3584CT, Utrecht, The Netherlands<\/p>\n

        2<\/sup>\u00a0Max-Delbruck-Center for Molecular Medicine (MDC), Robert-Rossle-Str.\u00a010, 13092, Berlin-Buch, Germany.<\/p>\n

        HAPLOTYPE BLOCK STRUCTURE IS CONSERVED ACROSS MAMMALS<\/h1>\n

        \u00a0<\/strong><\/p>\n

        Kabanova A1<\/sup>., Novikova O1<\/sup>., Gunbin K1<\/sup>., Fet V2<\/sup>., Blinov A1<\/sup>*.<\/p>\n

        1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia.<\/p>\n

        2<\/sup>Marshall University,\u00a0Huntington, WV, USA.<\/p>\n

        EVOLUTIONARY RELATIONSHIPS AND DISTRIBUTION OF THE DIFFERENT LTR RETROTRANSPOSON FAMILIES IN PLANTS<\/p>\n

        Khan M.\u00a02<\/sup>, Kaiser Jamil1, 2\u00a0<\/sup>*<\/p>\n

        1<\/sup>Genetics Department, Bhagwan Mahavir Hospital and Research Center, and Research Director IACI & RC, Hyderabad, A.P, India<\/p>\n

        2<\/sup>School of Biotechnology, MGNIRSA (Affiliated to University of Mysore),\u00a0\u00a0Hyderabad, A.P, India<\/p>\n

        The Phylogenetic Analysis of Ubiquitin Conjugating Enzymes of Cancer Metasignature<\/p>\n

        \u00a0<\/strong><\/p>\n

        Korostishevsky M.1<\/sup>*, Bonne\u2019-Tamir B.1<\/sup>, Bentwich Z.2<\/sup>, Tsimanis A.2<\/sup><\/p>\n

        1<\/sup>Department of Human Molecular Genetics & Biochemistry, Tel Aviv University, Israel<\/p>\n

        2<\/sup>Institute of Clinical Immunology and AIDS, Kaplan Medical Center, Rehovot, Israel<\/p>\n

        MULTI-SNP ANALYSIS OF CCR5-CCR2 GENES IN ETHIOPIAN JEWS: MICRO-EVOLUTION AND HIV-RESISTANCE IMPLICATIONS<\/p>\n

        Kovaleva G.Yu.*1,2<\/sup>, Gelfand M.S.1,2<\/sup><\/p>\n

        1<\/sup>\u00a0Moscow State University, Department of Bioengeneering and Bioinformatics, Moscow, Russia.<\/p>\n

        2<\/sup>\u00a0Institute for Information Transmission Problems, RAS, Moscow, Russia.<\/p>\n

        TRANSCRIPTIONAL REGULATION OF THE METHIONINE BIOSYNTHESIS IN ACTINOBACTERIA AND STREPTOCOCCI<\/p>\n

        Kuznetsova A.Y.*1<\/sup>, Naumoff D.G.2<\/sup><\/p>\n

        1\u00a0<\/sup>Moscow State University, Department of Bioengineering and Bioinformatics, Moscow, Russia<\/p>\n

        2\u00a0<\/sup>State Institute for Genetics and Selection of Industrial Microorganisms, Moscow, Russia<\/p>\n

        PHYLOGENETIC ANALYSIS OF COG1649, A NEW FAMILY OF PREDICTED GLYCOSYL HYDROLASES<\/p>\n

        \u00a0<\/strong><\/p>\n

        Lashin S.A.*1<\/sup>, Likhoshvai V.A.1<\/sup>, Kolchanov N.A1<\/sup>, Matushkin Yu.G.1<\/sup><\/p>\n

        1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

        EVOLUTIONARY CONSTRUCTOR: A PACKAGE FOR MODELING COEVOLUTION OF UNICELLULAR ORGANISMS<\/p>\n

        Lashin S.A.*, Likhoshvai V.A., Kolchanov N.A., Matushkin Yu.G.<\/p>\n

        Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

        MODELING OF HORIZONTAL GENE TRANSFER IN PROKARYOTIC POPULATIONS WITH THE “EVOLUTIONARY CONSTRUCTOR” PROGRAM PACKAGE<\/p>\n

        \u00a0<\/strong><\/p>\n

        Liventseva V.*, Kaygorodova I.<\/p>\n

        Limnological Institute of SB RAS, Irkutsk, Russia<\/p>\n

        MOLECULES VERSUS MORPHOLOGY IN OLIGOCHAETA SYSTEMATICS<\/h1>\n

        Novikova O.*1<\/sup>, Fursov M.2<\/sup>, Blinov A.1<\/sup><\/p>\n

        1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

        2<\/sup>Novosibirsk Center of Information Technologies \u201cUniPro\u201d, Novosibirsk, Russia<\/p>\n

        NEW FAMILY OF LTR RETOTRANSPOSABLE ELEMENTS FROM FUNGI<\/p>\n

        Peretolchina T.E.*, Bukin Yu.S., Sitnikova T.Ya., Sherbakov D.Yu.<\/p>\n

        Limnological Institute SB RAS, Irkutsk, Russia<\/p>\n

        POPULATION GENETIC POLYMORPHISM OF ENDEMIC MOLLUSCS\u00a0BAICALIA CARINATA<\/em>\u00a0(MOLLUSCA:\u00a0\u00a0CAENOGASTROPODA)<\/p>\n

        Rotskaya U.N., Rogozin I.B., Vasyunina E.A., Kolosova N.G., Sinitsyna O.I.*<\/sup><\/p>\n

        Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

        THEORETICAL ANALYSIS OF THE MITOCHONDRIAL DNA SOMATIC MUTATION SPECTRA IN OXYS AND WISTAR RATS<\/p>\n

        \u00a0<\/strong><\/p>\n

        Rusin L.Y.*, Lyubetsky V.A.<\/p>\n

        Institute for Information Transmission Problems of the RAS, Moscow, Russia<\/p>\n

        REFINEMENT OF PHYLOGENETIC SIGNAL IN MULTIPLE SEQUENCE ALIGNMENT: RESULTS OF SIMULATION STUDY<\/p>\n

        <\/h1>\n

        Ryabinina O. M.<\/h1>\n

        Vavilov Institute of General Genetics RAS, Moscow, Russia<\/p>\n

        GENETIC DIVERSITY AND PHYLOGENETIC RELATIONSHIPS IN GROUPS OF ASIAN GUARDIAN, SIBERIAN HUNTING AND EUROPEAN SHEPHERD DOG BREEDS<\/h1>\n

        Yudin N.S.1*<\/sup>, Vasil\u2019eva L.A.1<\/sup>, Kobzev V.F.1<\/sup>, Kuznetsova T.N.1<\/sup>, Ignatieva E.V.1<\/sup>, Oshchepkov D.Yu.1<\/sup>, Voevoda M.I.1,2<\/sup>, Romaschenko A.G.1<\/sup><\/p>\n

        1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

        2<\/sup>Institute of Internal Medicine SB RAMS, Novosibirsk, Russia<\/p>\n

        ASSOCIATION STUDY OF SNP OF THE TNF-ALPHA GENE WITH BOVINE LEUKOSIS AND EVALUATION OF ITS FUNCTIONAL SIGNIFICANCE<\/p>\n

        Zotov V.S.1<\/sup>, Punina N.V.1<\/sup>, Dorokhov D.B.1<\/sup>, Schaad N.W.2<\/sup>, Ignatov A.N.1<\/sup>*<\/p>\n

        1<\/sup>Centre \u201cBioengineering\u201d RAS, Moscow, Russia<\/p>\n

        2<\/sup>FDWSRU, USDA-ARS, MD, USA<\/p>\n

        ADAPTIVE and phylogenetic changes in chloroplast genomes<\/p>\n

        \u00a0<\/strong><\/p>\n

        COMPUTER DEMONSTRATIONS<\/strong><\/p>\n

        Chupov V.S.*<\/sup>, Machs E.M.<\/p>\n

        Komarov Botanical institute RAS, St.Petersburg, Russia.<\/p>\n

        VARIATIONS IN NUCLEOTIDE COMPOSITION OF THE REGION ITS1-5.8S RDNA-ITS2 IN EVOLUTIONARY ADVANCED AND EVOLUTIONARY STATIC BRANCH OF THE MONOCOTYLEDONOUS PLANTS<\/p>\n

        \u00a0<\/strong><\/p>\n

        \u00a0<\/strong><\/p>\n

          \n
        1. \n

          COMPUTATIONAL SYSTEMS BIOLOGY<\/strong><\/h3>\n<\/li>\n<\/ol>\n

          4.1 Modeling of Molecular Genetic Systems and Processes in Bacterial Cell<\/strong><\/p>\n

          \u00a0<\/strong><\/p>\n

          POSTER PRESENTATIONS<\/strong><\/p>\n

          Khlebodarova\u00a0T.M.1<\/sup>, Ananko\u00a0E.A.1<\/sup>*, Nedosekina E.A.1<\/sup>, Podkolodnaya\u00a0O.A.1<\/sup>, Poplavsky A.S.1<\/sup>, Smirnova\u00a0O.G.1<\/sup>, Ibragimova\u00a0S.S.1<\/sup>, Mishchenko\u00a0E.L.1<\/sup>, Stepanenko I.L.1<\/sup>, Ignatieva E.V.1<\/sup>, Proskura A.L.1<\/sup>, Nishio Y.2<\/sup>, Imaizumi A.2<\/sup>, Usuda, Y.2<\/sup>, Matsui K.2<\/sup>, Podkolodny N.L.1\u00a0<\/sup>, Kolchanov N.A.1<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Life Sciences, Ajinomoto, Co., Inc., Kawasaki-city, Japan<\/p>\n

          IN SILICO\u00a0CELL II.\u00a0\u00a0INFORMATION SOURCES FOR MODELING\u00a0ESCHERICHIA COLI\u00a0METABOLIC PATHWAYS<\/p>\n

           <\/p>\n

          Ratushny A.V.1<\/sup>*,\u00a0Usuda, Y.2<\/sup>, Matsui K.2<\/sup>, Podkolodnaya O.A.1<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Life Sciences, Ajinomoto, Co., Inc., Kawasaki, Japan<\/p>\n

          MATHEMATICAL MODELING OF ELEMENTARY PROCESSES OF THE GENE NETWORK CONTROLLING HISTIDINE BIOSYNTHESIS IN\u00a0ESCHERICHIA COLI<\/em><\/p>\n

           <\/p>\n

          Nedosekina E.A.1<\/sup>*,\u00a0Usuda, Y.2<\/sup>, Matsui K.2<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Life Sciences, Ajinomoto, Co., Inc., Kawasaki, Japan<\/p>\n

          MODELING OF THE EFFECTS OF THREONINE, VALINE, ISOLEUCINE AND PYRIDOXAL 5′-MONOPHOSPHATE ON BIOSYNTHETIC THREONINE DEHYDRATASE REACTION<\/p>\n

          \u00a0<\/strong><\/p>\n

          Ratushny A.V.*, Nedosekina E.A.<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          REGULATION OF PYRIMIDINE BIOSYNTHESIS IN\u00a0ESCHERICHIA COLI:<\/em>\u00a0GENE NETWORK RECONSTRUCTION AND MATHEMATICAL MODELING<\/p>\n

          \u00a0<\/em><\/p>\n

          Ratushny A.V.1<\/sup>*, Smirnova O.G.1<\/sup>,\u00a0Usuda, Y.2<\/sup>, Matsui K.2<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Life Sciences, Ajinomoto, Co., Inc., Kawasaki, Japan<\/p>\n

          REGULATION OF THE PENTOSE PHOSPHATE PATHWAY IN\u00a0ESCHERICHIA COLI:<\/em>\u00a0GENE NETWORK RECONSTRUCTION AND MATHEMATICAL MODELING OF METABOLIC REACTIONS<\/p>\n

          Ananko\u00a0E.A.1<\/sup>*,\u00a0Ratushny A.V.\u00a01<\/sup>,\u00a0Usuda, Y.2<\/sup>, Matsui K.2<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Life Sciences, Ajinomoto, Co., Inc., Kawasaki, Japan<\/p>\n

          AROMATIC AMINO ACID BIOSYNTHESIS IN\u00a0ESCHERICHIA COLI:<\/em>\u00a0GENERALIZED HILL FUNCTION MODEL OF THE TRYPTOPHAN-SENSITIVE 3-DEOXY-D-ARABINO-HEPTULOSONATE-7-PHOSPHATE SYNTHASE REACTION DEMONSTRATE COMPLICATED MECHANISM<\/p>\n

          \u00a0<\/em><\/p>\n

          Ratushny A.V.*, Khlebodarova T.M.<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          MATHEMATICAL MODELING OF REGULATION OF cy\u043eABCDE OPERON EXPRESSION IN\u00a0ESCHERICHIA COLI<\/em><\/p>\n

          \u00a0<\/em><\/p>\n

          Khlebodarova T.M.*, Lashin S.A., Apasieva N.V.<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          GENE NETWORK RECONSTRUCTION AND MATHEMATICAL MODELING OF\u00a0ESCHERICHIA COLI<\/em>\u00a0<\/em>RESPIRATION: REGULATION OF F0F1-ATP SYNTHASE BY METAL IONS<\/p>\n

          Nedosekina E.A.*<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          MATHEMATICAL MODELING OF REGULATION OF\u00a0ESCHERICHIA COLI<\/em>\u00a0\u00a0PURINE BIOSYNTHESIS PATHWAY ENZYMATIC REACTIONS<\/p>\n

           <\/p>\n

          Mishchenko E.L.\u00a01<\/sup>*, Lashin S.A.1<\/sup>,\u00a0Usuda, Y.2<\/sup>, Matsui K.2<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Life Sciences, Ajinomoto, Co., Inc., Kawasaki, Japan<\/p>\n

          RECONSTRUCTION AND MATHEMATICAL MODELING OF THE GENE NETWORK CONTROLLING CYSTEINE BIOSYNTHESIS IN\u00a0ESCHERICHIA COLI:<\/em>\u00a0REGULATION OF SERINE ACETYLTRANSFERASE ACTIVITY<\/p>\n

          \u00a0<\/em><\/p>\n

          Smirnova O.G.*, Ratushny A.V.<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          GENE NETWORK RECONSTRUCTION AND MATHEMATICAL MODELING OF SALVAGE PATHWAYS: REGULATION OF ADENINE PHOSPHORIBOSYLTRANSFERASE ACTIVITY BY STRUCTURALLY SIMILAR SUBSTRATES<\/p>\n

           <\/p>\n

          Turnaev I.I.1<\/sup>*, Ibragimova S.S.1<\/sup>,\u00a0Usuda Y.2<\/sup>, Matsui K.2<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Life Sciences, Ajinomoto, Co., Inc., Kawasaki, Japan<\/p>\n

          MATHEMATICAL MODELING OF SERINE AND GLYCINE BIOSYNTHESIS REGULATION IN\u00a0ESCHERICHIA COLI<\/em><\/p>\n

          \u00a0<\/em><\/p>\n

          Turnaev I.I.*, Smirnova O.G.<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          REGULATION OF PYRUVATE BIOSYNTHESIS IN\u00a0ESCHERICHIA COLI:<\/em>\u00a0GENE NETWORK RECONSTRUCTION AND MATHEMATICAL MODELING OF ENZYMATIC REACTIONS OF THE PATHWAY<\/p>\n

          Ibragimova S.S.*, Smirnova O.G.,\u00a0Grigorovich D.A.,\u00a0Khlebodarova T.M.<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          BiotechPro: A DATABASE FOR MICROBIOLOGICALLY SYNTHESIZED PRODUCTS OF BIOTECHNOLOGICAL VALUE<\/p>\n

          Peshkov I.M.1<\/sup>, Fadeev S.I.3<\/sup><\/h2>\n

          1<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

          2<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

          ABOUT RECONSTRUCTION OF REGULATORY MECHANISM OF GENE ELEMENTS\u2019 EXPRESSION<\/p>\n

          Pe\u00f1aloza-Sp\u00ednola M.I., Peralta-Gil M.*, Gama-Castro S.*, Contreras-Moreira B., Santos-Zavaleta A., Mart\u00ednez-Flores I. and Collado-Vides J.<\/p>\n

          Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (Center of Genomic Sciences, UNAM) Cuernavaca, Morelos; M\u00e9xico.<\/p>\n

          REGULONDB: GOING BEYOND TRANSCRIPTIONAL REGULATION<\/p>\n

          Santos-Zavaleta A., Salgado H*., Gama-Castro S., Peralta-Gil M., Contreras-Moreira B., Pe\u00f1aloza-Sp\u00ednola M. I., Collado-Vides J.<\/p>\n

          Centro de Ciencias Gen\u00f3micas, Universidad Nacional Aut\u00f3noma de M\u00e9xico (Center of Genomic Sciences, UNAM). Cuernavaca, Morelos; M\u00e9xico.<\/p>\n

          REGULONDB. THE MOST IMPORTANT DATABASE IN TRANSCRIPTIONAL REGULATORY NETWORK, OPERON ORGANIZATION, AND GROWTH CONDITIONS OF\u00a0ESCHERICHIA COLI\u00a0K-12<\/p>\n

          \u00a0<\/strong><\/p>\n

          4.2 Modeling of Molecular Genetic Systems and Processes in Multicellular\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0Organisms<\/strong><\/h3>\n

          \u00a0<\/strong><\/p>\n

          POSTER PRESENTATIONS<\/strong><\/p>\n

          \u00a0<\/strong><\/p>\n

          \u00a0<\/strong><\/p>\n

          Akberdin I.R.1<\/sup>*, Kashevarova N.A.2<\/sup>, Khlebodarova T.M.1<\/sup>, Bazhan S.I.3<\/sup>, Likhoshvai V.A.1<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

          3<\/sup>State Research Center of Virology and Biotechnology \u201cVector\u201d, Koltsovo, Russia<\/p>\n

          A MATHEMATICAL MODEL FOR THE INFLUENZA VIRUS LIFE CYCLE<\/h2>\n

          \u00a0<\/strong><\/p>\n

          Bazhan S.I.1*<\/sup>, Schwartz Ya.Sh.2<\/sup>, Gainova I.A.3<\/sup>, E.A. Ananko E.A.4<\/sup><\/p>\n

          1<\/sup>SRC VB Vector, Novosibirsk<\/p>\n

          2<\/sup>Institute of Internal Medicine SB RAMS, Novosibirsk<\/p>\n

          3<\/sup>Institute of Mathematics, SB RAS, Novosibirsk<\/p>\n

          4<\/sup>Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia<\/p>\n

          A MATHEMATICAL MODEL OF IMMUNE RESPONSE IN INFECTION INDUCED BY MYCOBACTERIA TUBERCULOSIS. PREDICTION OF THE DISEASE COURSE AND OUTCOMES AT DIFFERENT TREATMENT REGIMENS<\/p>\n

          Bezmaternikh\u00a0K.D.,\u00a0Mishchenko\u00a0E.L.*,\u00a0Ratushny\u00a0A.V.,\u00a0Likhoshvai\u00a0V.A.,\u00a0Khlebodarova\u00a0T.M.,\u00a0Ivanisenko\u00a0V.A.<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          A MINIMUM MATHEMATICAL MODEL FOR SUPPRESSION HCV\u00a0RNA\u00a0REPLICATION IN\u00a0CELL CULTURE<\/p>\n

          Fadeev S.I.1<\/sup>*, Shtokalo D.N.2<\/sup>, Likhosvai V.A.3<\/sup><\/p>\n

          1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia;<\/p>\n

          2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

          3<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          MATRIX PROCESS MODELLING: STUDY OF A MODEL OF SYNTHESIS OF LINEAR BIOMOLECULES WITH REGARD TO REVERSIBILITY OF PROCESSES<\/p>\n

          Gursky V.V.1<\/sup>*, Samsonov A.M.1<\/sup>, Reinitz J.2<\/sup><\/p>\n

          1<\/sup>Ioffe Physico-Technical Institute of the Russian Academy of Sciences, St. Petersburg, Russia<\/p>\n

          2\u00a0<\/sup>Stony Brook University, Stony Brook, New York, U.S.A.<\/p>\n

          APPROXIMATE STATIONARY ATTRACTORS IN DROSOPHILA GAP GENE CIRCUITS IN THE LIMIT OF STEEP-SIGMOID INTERACTIONS<\/p>\n

          Kalashnikova\u00a0E.V.1<\/sup>,\u00a0Dymshits\u00a0G.\u00a0M.1<\/sup>,\u00a0Kolpakov\u00a0F.A.2,3<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Design Technological Institute of Digital Techniques\u00a0SB RAS, Novosibirsk, Russia;
          \n3<\/sup>Institute of Systems Biology OOO, Novosibirsk, Russia<\/p>\n

          SIGNAL TRANSDUCTION PATHWAYS INVOLVED IN TRANSCRIPTIONAL REGULATION OF TYROSINE HYDROXYLASE.<\/p>\n

          MischenkoE.L.1<\/sup>, KorotkovR.O.2<\/sup>, IvanisenkoV.A.1,2<\/sup>*<\/p>\n

          1\u00a0<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2\u00a0<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

          HCV-KINET DATABASE: KINETIC PARAMETER REACTIONS AND REGULATORY PROCESSES OF THE LIFE CYCLE OF THE HEPATITIS C VIRUS<\/p>\n

          Ratushny A.V.<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          MATHEMATICAL MODELING OF RECEPTOR MEDIATED ENDOCYTOSIS OF LOW-DENSITY LIPOPROTEINS AND THEIR DEGRADATION IN LYSOSOMES<\/p>\n

          Ratushny A.V.*, Bezmaternikh K.D<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          CONSERVED PROPERTIES OF ENZYMATIC SYSTEMS: PRENYLTRANSFERASE KINETICS<\/p>\n

          Ratushny A.V<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          MATHEMATICAL MODELING OF THE GENE NETWORK CONTROLLING HOMEOSTASIS OF INTRACELLULAR CHOLESTEROL<\/p>\n

          \u00a0<\/strong><\/p>\n

          Sharipov R.N.1,2,3,<\/sup>*, Kolpakova A.F.4<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia;<\/p>\n

          2<\/sup>Design Technological Institute of Digital Techniques\u00a0SB RAS,\u00a0Novosibirsk, Russia;<\/p>\n

          3<\/sup>Institute of Systems Biology OOO, Novosibirsk, Russia;<\/p>\n

          4<\/sup>State Research Institute for Medical Problems of the North, SB RAMS, Krasnoyarsk, Russia<\/p>\n

          FORMALIZED DESCRIPTION OF NF-\u039aB PATHWAY, ITS ROLE IN INFLAMMATION, INHIBITION OF APOPTOSIS, CARCINOGENESIS, AND WAYS OF INACTIVATION FOR PREDICTION OF NEW TARGETS FOR ANTI-INFLAMMATORY AND ANTI-CANCER TREATMENT<\/p>\n

          Stepanenko I.L1<\/sup>*., Podkolodnaya N.N.1<\/sup>, Paramonova N.V.1<\/sup>, Podkolodny N.L.1,2<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia<\/p>\n

          RECONSTRUCTION AND STRUCTURE ANALYSIS OF APOPTOSIS GENE NETWORK IN HEPATITIS C<\/p>\n

          \u00a0<\/strong><\/p>\n

          \u00a0<\/strong><\/p>\n

          COMPUTER DEMONSTRATION<\/strong><\/p>\n

          \u00a0<\/strong><\/p>\n

          Fadeev S.I.1<\/sup>*, Korolev V.K.1<\/sup>,\u00a0Gainova I.A.2<\/sup>, Medvedev3<\/sup>A.E.<\/p>\n

          1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia;<\/p>\n

          2<\/sup>Khristianovich Institute of Theoretical and Applied Mechanics SB RAS, Novosibirsk, Russia;<\/p>\n

          3<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          THE PACKAGE STEP+ FOR NUMERICAL STUDY OF AUTONOMOUS SYSTEMS ARISING WHEN MODELING DYNAMICS OF GENETIC-MOLECULAR SYSTEMS<\/p>\n

          4.3 Modeling of Morphogenesis<\/strong><\/h3>\n

           <\/p>\n

          POSTER PRESENTATIONS<\/strong><\/p>\n

           <\/p>\n

          Bukharina T.A.1<\/sup>, Katokhin A.V.1,2<\/sup>, Furman D.P.1,2<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

          THE GENE NETWORK DETERMINING DEVELOPMENT OF DROSOPHILA MELANOGASTER MECHANORECEPTORS<\/p>\n

          Mironova V.V.1<\/sup>*<\/em>, Poplavsky A.S.1<\/sup>, Ponomarev D.K.2<\/sup>, Omelyanchuk N.A.1<\/sup><\/h2>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Informatics System SB RAS, Novosibirsk, Russia<\/p>\n

          ONTOLOGY OF ARABIDOPSIS GENE NET SUPPLEMENTARY DATABASE (AGNS), CROSS DATABASE REFERENCES TO TAIR ONTOLOGY<\/p>\n

          Ponomaryov D.1*<\/sup>, Omelianchuk N.2<\/sup>, Kolchanov N.2<\/sup>, Mjolsness E.3<\/sup>, Meyerowitz E.4<\/sup><\/p>\n

          1\u00a0<\/sup>Institute of Informatics Systems SB RAS, Novosibirsk, Russia<\/p>\n

          2\u00a0<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          3<\/sup>\u00a0Institute for Genomics and Bioinformatics, University of California, Irvine, CA, USA<\/p>\n

          4\u00a0<\/sup>Division of Biology, California Institute of Technology, Pasadena, CA, USA<\/p>\n

          SEMANTICALLY RICH ONTOLOGY OF ANATOMICAL STRUCTURE AND DEVELOPMENT FOR\u00a0ARABIDOPSIS THALIANA (L.)<\/em><\/h1>\n

          4.4 Gene Networks Theory: Mathematical Problems and Software<\/strong><\/p>\n

          POSTER PRESENTATIONS<\/strong><\/p>\n

          Aman E.E.*, Levitsky V.G., Ignatieva E.V.<\/p>\n

          Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          RECONSTRUCTION AND COMPUTER ANALYSIS OF THE GENE NETWORK OF FATTY ACID\u00a0\u0392\u00a0OXIDATION REGULATED BY THE PPAR TRANSCRIPTIONAL FACTORS<\/p>\n

          Demidenko G.V.1<\/sup>*, Khropova Yu.E.2<\/sup>, Kotova T.V.2<\/sup><\/p>\n

          1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia;<\/p>\n

          2<\/sup>Novosibirsk State University, Novosibirsk, Russia;<\/p>\n

          matrix process modelling: ON ONE CLASS OF INFINITE-ORDER SYSTEMS OF dIFFERENTIAL EQUATIONS AND ON DELAY DIFFERENTIAL EQUATIONS<\/p>\n

          Demidenko G.V.1<\/sup>*, Mudrov A.V.\u00a02<\/sup><\/p>\n

          1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia;<\/p>\n

          2<\/sup>Novosibirsk State University, Novosibirsk, Russia;<\/p>\n

          matrix process modelling: On a new method of approximation of solutions of delay differential equations<\/p>\n

          Demidenko G.V.1<\/sup>*, Khropova Yu.E.2<\/sup><\/p>\n

          1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

          matrix process modelling: ON PROPERTIES OF SOLUTIONS OF ONE DELAY DIFFERENTIAL EQUATIONS<\/p>\n

          Fadeev\u00a0S.I.1<\/sup>*,\u00a0Korolev\u00a0V.K.1<\/sup><\/p>\n

          1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

          PROGRAM PACKAGE HGNET FOR COMPUTATIONAL INVESTIGATION OF HYPOTHETICAL GENE NETWORKS<\/p>\n

          \u00a0<\/strong><\/p>\n

          Klishevich M.A.*, Kogai V.V., Fadeev S.I.<\/p>\n

          Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

          RESEARCH OF CYCLIC GENE NETWORK CIRCUITS WITH NEGATIVE TYPE OF REGULATION<\/p>\n

          \u00a0<\/strong><\/p>\n

          Kolpakov F.1,2*<\/sup>, Sharipov R.3,1,2<\/sup>,\u00a0<\/sup>Cheremushkina E.2<\/sup>, Kalashnikova E.3<\/sup><\/p>\n

          1<\/sup>Institute of Systems Biology OOO, Novosibirsk, Russia;\u00a02<\/sup>Design Technological Institute of Digital Techniques, SB RAS, Novosibirsk, Russia;\u00a03<\/sup>Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia<\/p>\n

          BIOPATH \u2013 A NEW APPROACH TO FORMALIZED DESCRIPTION AND SIMULATION OF BIOLOGICAL SYSTEMS<\/p>\n

           <\/p>\n

          Komarov A.V.1*<\/sup>, Akberdin I. R.2<\/sup>, Ozonov E. A.1<\/sup>, Evdokimov A. A.3<\/sup><\/h4>\n

          1<\/sup>Novosibirsk State University, Novosibirsk, Russia;<\/p>\n

          2<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia;<\/p>\n

          3<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia;<\/p>\n

          ABOUT RECONSTRUCTION OF GENETIC AUTOMATE ON BASIS OF BOOLEAN DYNAMIC DATA<\/p>\n

          Likhosvai V.A.1*<\/sup>, Rudneva D.S.2<\/sup>, Fadeev S.I.3<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia;<\/p>\n

          2<\/sup>Novosibirsk State University, Novosibirsk, Russia;<\/p>\n

          3<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia<\/p>\n

          OSCILLATIONS OF CHAOTIC TYPE IN SYMMETRIC GENE NETWORKS OF SMALL DIMENSION<\/p>\n

          Matveeva I.I.\u00a01<\/sup>, Popov A.M.<\/p>\n

          1<\/sup>Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia;<\/p>\n

          2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

          3<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          matrix process modelling: Dependence of solutions of a system of DIFferential equations on parameter<\/p>\n

          Podkolodnyy N.L1,2<\/sup>.*<\/sup>, Podkolodnaya N.N.\u00a01<\/sup>, Miginsky D.S.1<\/sup>, Poplavsky A.S.1<\/sup>, Likhoshvai V.A.1<\/sup>, Compani B.3<\/sup>, Mjolsness E.3<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

          2<\/sup>Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia<\/p>\n

          3<\/sup>Institute\u00a0for Genomics and Bioinformatics<\/a>, University of California, Irvine, USA<\/p>\n

          AN INTEGRATION OF THE DESCRIPTIONS OF gene networkS AND THEIR MODELS PRESENTED IN SIGMOID (cELLERATOR) and GENENET<\/p>\n

          COMPUTER DEMONSTRATIONS<\/p>\n

          Rudenko V.M.*, Korotkov E.V.<\/p>\n

          Center of Bioengineering RAS, Moscow, Russia<\/p>\n

          CONSTRUCTION OF THE HCV-HEPATOCYTE SYSTEM MODEL<\/p>\n

          Sharipov R.N.1,2,3,<\/sup>*, Kolpakova A.F.4<\/sup><\/p>\n

          1<\/sup>Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia;<\/p>\n

          2<\/sup>Design Technological Institute of Digital Techniques\u00a0SB RAS,\u00a0Novosibirsk, Russia;<\/p>\n

          3<\/sup>Institute of Systems Biology OOO, Novosibirsk, Russia;<\/p>\n

          4<\/sup>State Research Institute for Medical Problems of the North, SB RAMS, Krasnoyarsk, Russia<\/p>\n

          FORMALIZED DESCRIPTION OF NF-\u039aB PATHWAY, ITS ROLE IN INFLAMMATION, INHIBITION OF APOPTOSIS, CARCINOGENESIS, AND WAYS OF INACTIVATION FOR PREDICTION OF NEW TARGETS FOR ANTI-INFLAMMATORY AND ANTI-CANCER TREATMENT<\/p>\n

          Kolpakov F.1,2*<\/sup>, Sharipov R.3,1,2<\/sup>,\u00a0<\/sup>Cheremushkina E.2<\/sup>, Kalashnikova E.3<\/sup><\/p>\n

          1<\/sup>Institute of Systems Biology OOO, Novosibirsk, Russia;\u00a02<\/sup>Design Technological Institute of Digital Techniques, SB RAS, Novosibirsk, Russia;\u00a03<\/sup>Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia<\/p>\n

          BIOPATH \u2013 A NEW APPROACH TO FORMALIZED DESCRIPTION AND SIMULATION OF BIOLOGICAL SYSTEMS<\/p>\n

          \u00a0<\/strong><\/p>\n

          \u00a0<\/strong><\/p>\n

          \u00a0<\/strong><\/p>\n

            \n
          1. \n

            NEW APPROACHES TO ANALYSIS\/MODELING OF BIOMOLECULAR DATA AND PROCESSES<\/strong><\/h3>\n<\/li>\n<\/ol>\n

            \u00a0<\/strong>POSTER PRESENTATIONS<\/strong><\/p>\n

            \u00a0<\/strong><\/p>\n

            Arrigo P.1*<\/sup>, CardoP.P.2<\/sup><\/p>\n

            1<\/sup>CNR Institute for Macromolecular Studies, Genoa, Italy<\/p>\n

            2<\/sup>\u00a0Department of Health Science, University of Genoa, Genoa, Italy<\/p>\n

            Investigation of Named entity recognition in molecular biology by data fusion<\/p>\n

             <\/p>\n

            Axenovich T.I.<\/p>\n

            Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

            Graph theory algorithm for solution of computational problems of gene mapping<\/p>\n

            Huang Shaoqing *, Cui Yini<\/p>\n

            College of Life Science & Biotechnology, Shanghai Jiao Tong University, Shanghai, China<\/p>\n

            UNEQUALLY SPACED SAMPLING MAPPING OF QTL<\/p>\n

            Kolpakov F.1,2,<\/sup>*, Poroikov V.3<\/sup>, Sharipov R.4,2,1<\/sup>, Milanesi L.5<\/sup>, Kel A.6<\/sup><\/p>\n

            1<\/sup>Design Technological Institute of Digital Techniques, SB RAS, Novosibirsk, Russia;<\/p>\n

            2<\/sup>Institute of Systems Biology, Novosibirsk OOO, Russia;<\/p>\n

            3<\/sup>Institute of Biomedical Chemistry, RAMS, Moscow, Russia;<\/p>\n

            4<\/sup>Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia;<\/p>\n

            5<\/sup>Institute of Biomedical Technologies, Segrate (MI), Italy;<\/p>\n

            6<\/sup>BIOBASE GmbH, Wolfenbuettel, Germany<\/p>\n

            CYCLONET – AN INTEGRATED DATABASE ON CELL CYCLE REGULATION AND CARCINOGENESIS<\/p>\n

            Labarga A.*, Anderson M., Valentin F., Lopez R.<\/p>\n

            European Bioinformatics Institute, Hinxton, United Kingdom<\/p>\n

            e-mail: alabarga@ebi.ac.uk<\/p>\n

            *<\/sup>Corresponding author<\/p>\n

            WEB SERVICES AT THE EUROPEAN BIOINFORMATICS INSTITUTE<\/p>\n

            Miginsky D.S.1,3<\/sup>*, Sokolov S.A.2<\/sup>, Labuzhsky V.V.2<\/sup>, Nikitin A.G.2,3<\/sup><\/p>\n

            1\u00a0<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

            2<\/sup>\u00a0A.P. Ershov Institute of Informatics Systems SB RAS<\/p>\n

            3\u00a0<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

            OBJECT-ORIENTED APPROACH TO BIOINFORMATICS SOFTWARE RESOURCES INTEGRATION<\/p>\n

            Miginsky D.S.1,2<\/sup>*, Suslov V.V.1<\/sup>, Rasskazov D.A.1,2<\/sup>, Podkolodny N.L.1<\/sup>, Kolchanov N.A.1,2<\/sup><\/p>\n

            1\u00a0<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

            2\u00a0<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

            ARCHITECTURE OF SOFTWARE TOOLKIT FOR STORING AND OPERATNG WITH BIOSYSTEMS MODELS<\/p>\n

            K.N.Sarsenbaev<\/p>\n

            Institute of radiation safety and ecology, Kurchatov, Kazakhstan<\/p>\n

            USE MOLECULAR MARKERS FOR DIFFERENTIATION POPULATIONS OF STIPA CAPILLATA GROWING IN THE REGIONS WITH HIGH CHRONICAL DOSES OF &#947;-RADIATION<\/p>\n

            Suslov V.V1<\/sup>*,\u00a0<\/sup>Sergeev M.G.2<\/sup>, Yurlova N.I.3<\/sup>, Miginsky D.S.1,2<\/sup><\/p>\n

            1<\/sup>Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia<\/p>\n

            2<\/sup>Novosibirsk State University, Novosibirsk, Russia<\/p>\n

            3<\/sup>Institute of Animal Systematics and Ecology, SB RAS, Novosibirsk, Russia<\/p>\n

            THE ONTOLOGY OF ECOSYSTEMS<\/p>\n

            \u00a0<\/strong><\/p>\n

            COMPUTER DEMONSTRATIONS<\/strong><\/p>\n

            \u00a0<\/strong><\/p>\n

            \u00a0<\/strong><\/p>\n

            Kolpakov F.1,2,<\/sup>*, Poroikov V.3<\/sup>, Sharipov R.4,2,1<\/sup>, Milanesi L.5<\/sup>, Kel A.6<\/sup><\/p>\n

            1<\/sup>Design Technological Institute of Digital Techniques, SB RAS, Novosibirsk, Russia;<\/p>\n

            2<\/sup>Institute of Systems Biology, Novosibirsk OOO, Russia;<\/p>\n

            3<\/sup>Institute of Biomedical Chemistry, RAMS, Moscow, Russia;<\/p>\n

            4<\/sup>Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia;<\/p>\n

            5<\/sup>Institute of Biomedical Technologies, Segrate (MI), Italy;<\/p>\n

            6<\/sup>BIOBASE GmbH, Wolfenbuettel, Germany<\/p>\n

            CYCLONET – AN INTEGRATED DATABASE ON CELL CYCLE REGULATION AND CARCINOGENESIS<\/p>\n

            Kolpakov F.1,2<\/sup>*, Puzanov M.1,2<\/sup>, Koshukov A.1,2<\/sup><\/p>\n

            1<\/sup>Institute of Systems Biology OOO, Novosibirsk, Russia<\/p>\n

            2<\/sup>Design Technological Institute of Digital Techniques SB RAS, Novosibirsk, Russia<\/p>\n

            BIOUML: VISUAL MODELING, AUTOMATED CODE GENERATION AND SIMULATION OF BIOLOGICAL SYSTEMS<\/p>\n

            <\/p>","protected":false},"excerpt":{"rendered":"

            July 16:\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0Registration from 10:00 Opening Ceremony at 14:00 Plenar Session 14:30-18:00 A PRELIMINARY WORKING SCHEDULE BY SECTIONS: July 17:\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0COMPUTATIONAL STRUCTURAL AND FUNCTIONAL GENOMICS; July 18:\u00a0COMPUTATIONAL STRUCTURAL AND FUNCTIONAL PROTEOMICS; July 19:\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0POSTER SESSION July 20:\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0\u00a0COMPUTATIONAL EVOLUTIONARY BIOLOGY; NEW APPROACHES TO BIOMOLECULAR … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":13,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2006\/en\/wp-json\/wp\/v2\/pages\/89"}],"collection":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2006\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2006\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/bgrs2006\/en\/wp-json\/wp\/v2\/users\/13"}],"replies":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/bgrs2006\/en\/wp-json\/wp\/v2\/comments?post=89"}],"version-history":[{"count":5,"href":"https:\/\/conf.icgbio.ru\/bgrs2006\/en\/wp-json\/wp\/v2\/pages\/89\/revisions"}],"predecessor-version":[{"id":125,"href":"https:\/\/conf.icgbio.ru\/bgrs2006\/en\/wp-json\/wp\/v2\/pages\/89\/revisions\/125"}],"wp:attachment":[{"href":"https:\/\/conf.icgbio.ru\/bgrs2006\/en\/wp-json\/wp\/v2\/media?parent=89"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}