{"id":74,"date":"2023-10-24T15:38:04","date_gmt":"2023-10-24T08:38:04","guid":{"rendered":"https:\/\/conf.icgbio.ru\/csb\/?page_id=74"},"modified":"2023-10-24T15:39:13","modified_gmt":"2023-10-24T08:39:13","slug":"cib-nsu","status":"publish","type":"page","link":"https:\/\/conf.icgbio.ru\/csb\/education\/cib-nsu\/","title":{"rendered":"Novosibirsk State University, Chair of Informational Biology"},"content":{"rendered":"<p>Selected courses (content, sample slides, etc.).<\/p>\n<p align=\"justify\"><b>Computational Systems Biology<\/b><\/p>\n<ol type=\"1\">\n<li><b>Genomic Regulatory Signals<\/b>\u00a0(<a class=\"s\" href=\"https:\/\/conf.icgbio.ru\/csb\/wp-content\/uploads\/sites\/118\/2023\/10\/Genomic-Regulatory-Signals.pdf\" target=\"_blank\" rel=\"noopener\">example slides<\/a>)\n<ul type=\"circle\">\n<li>Mechanisms of transcriptional control<\/li>\n<li>The databases on transcriptional regulation<\/li>\n<li>Conformational and physicochemical context-dependent DNA properties used for functional sites recognition and analysis. B-DNA Video Internet system.<\/li>\n<li>Gene expression control on the mRNA translation stage<\/li>\n<li>The recognition of promoters<\/li>\n<li>Analysis and recognition of transcription factor binding sites<\/li>\n<\/ul>\n<\/li>\n<li><b>Computational Genomics<\/b>\u00a0(<a class=\"s\" href=\"https:\/\/conf.icgbio.ru\/csb\/wp-content\/uploads\/sites\/118\/2023\/10\/Computational-Genomics.pdf\" target=\"_blank\" rel=\"noopener\">example slides<\/a>)\n<ul type=\"circle\">\n<li>Internet-resources for DNA sequence search and analysis<\/li>\n<li>General subject of bioinformatics<\/li>\n<li>Databases on Genes and Genomes<\/li>\n<li>Repeats in DNA, formal description and analysis<\/li>\n<li>Consensus, position weight matrices, sequence alignment methods<\/li>\n<li>Machine learning methods overview: hidden Markov models, neural networks, genetic algorithm<\/li>\n<li>Methods for eukaryotic gene structure annotation<\/li>\n<li>Statistical approaches used for different recognition techniques: accuracy comparison<\/li>\n<li>Investigation of qualitative and quantitative characteristics of transcriptome<\/li>\n<\/ul>\n<\/li>\n<li><b>Gene networks<\/b>\u00a0(<a class=\"s\" href=\"https:\/\/conf.icgbio.ru\/csb\/wp-content\/uploads\/sites\/118\/2023\/10\/Gene-networks.pdf\" target=\"_blank\" rel=\"noopener\">example slides<\/a>)\n<ul type=\"circle\">\n<li>Reconstruction gene network and analysis of their properties<\/li>\n<li>The arhitecture of gene network<\/li>\n<li>Apoptosis gene network<\/li>\n<li>The development networks<\/li>\n<li>Gene network complexity of prokaryotes and eukaryotes<\/li>\n<li>The principle of organization of metabolic networks<\/li>\n<\/ul>\n<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"<p>Selected courses (content, sample slides, etc.). Computational Systems Biology Genomic Regulatory Signals\u00a0(example slides) Mechanisms of transcriptional control The databases on transcriptional regulation Conformational and physicochemical context-dependent DNA properties used for functional sites recognition and analysis. B-DNA Video Internet system. Gene &hellip; <a href=\"https:\/\/conf.icgbio.ru\/csb\/education\/cib-nsu\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":13,"featured_media":0,"parent":71,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/conf.icgbio.ru\/csb\/wp-json\/wp\/v2\/pages\/74"}],"collection":[{"href":"https:\/\/conf.icgbio.ru\/csb\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/conf.icgbio.ru\/csb\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/csb\/wp-json\/wp\/v2\/users\/13"}],"replies":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/csb\/wp-json\/wp\/v2\/comments?post=74"}],"version-history":[{"count":2,"href":"https:\/\/conf.icgbio.ru\/csb\/wp-json\/wp\/v2\/pages\/74\/revisions"}],"predecessor-version":[{"id":76,"href":"https:\/\/conf.icgbio.ru\/csb\/wp-json\/wp\/v2\/pages\/74\/revisions\/76"}],"up":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/csb\/wp-json\/wp\/v2\/pages\/71"}],"wp:attachment":[{"href":"https:\/\/conf.icgbio.ru\/csb\/wp-json\/wp\/v2\/media?parent=74"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}