General Conference Schedule
| July, 21 | July, 22 | July, 23 | July, 24 | July, 25 | |
| Morning | Genomics of eukaryotes | Metagenomics | NGS and data analysis
Poster Session |
Medical genomics
Closing ceremony |
|
| Afternoon | Opening ceremony | Genomics of bacteria and viruses | |||
| Cultural events | Welcome party | ZOO | Ballet | Geological Museum
Banquet |
Preliminary list of lectures:
Genomics of eukaryotes
- Igor Grigoryev (DOE Joint Genome Institute, USA)
Fungal genomics for Energy and Environment - Konstantin Krutovsky (Georg-August-University of Göttingen, Germany)
Targeted and complete genome de novo sequencing in conifer trees with giant and complex genomes - Matthias Meyer (Max Planck Institute for Evolutionary Anthropology, Germany)
Archaic Genomes - Ancha Baranova (George Mason University, USA)
We know it all: what is next? Protein-centric analysis of publicly available PPI data for functionally diverse KCTD family as an example - Alexandr Graphodatsky (Institute for Molecular and Cellular Bbiology SB RAS, Novosibirsk)
Chromosomal organization of mammalian genomes - Anna Druzhkova (Institute for Molecular and Cellular Biology SB RAS, Novosibirsk)
Analysis of equid fossil DNA from the Denisova cave using throughput sequencing platforms - Alexey Moskalev (Institute of Biology of the Komi Science Centre of the Ural, Syktyvkar)
Transcriptome сhange of adult Drosophila melanogaster after exposure to gamma-radiation, 2,3,7,8-tetrachlorodibenzo-p-dioxin, toluene and formaldehyde - Fatima Smagulova (European University of Brittany, France)
Genome wide mapping of meiotic recombination hotspots in mice - Ekaterina Loseva (Institute of Сhemical Biology and Fundamental Medicine of SB RAS, Novosibirsk)
Characterization of genomic DNA fragments generated during apoptosis - Vladimir Trifonov (Institute for Molecular and Cellular Biology SB RAS, Novosibirsk)
The study of reptile sex chromosome evolution by high-throughput sequencing of chromosome specific libraries - Victoria Mironova (Institute of Cytology and Genetics, Novosibirsk)
Ауксин-зависимые изменения транскриптома корней Arabidopsis thaliana L.
Metagenomics
- Ludmila Chistoserdova (University of Washington, USA)
Using Metagenomics for understanding functionality of complex microbial communities - Evgeny Andronov (All-Russia Research Institute for Agricultural Microbiology, St.Petersburg)
New approaches for analyses of soil microbiome - AnnaPopenko (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
Special traits of russian gut microbiome: functional analysis and cross-national comparative study - Alexandr Zelenin (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
Структура бактериального сообщества пищеварительного тракта криптобиотической хирономиды Polypedilum vanderplanki с позиции метагеномного анализа. - Vitaly Kadnikov (Center “Bioengineering” RAS, Moscow)
Метагеномный анализ микробного сообщества глубинного подземного термального местообитания в Западной Сибири.
Genomics of bacteria and viruses
- Nikolay Ravin (Center “Bioengineering” RAS, Moscow)
Sequencing of genomes of extremophilic microorganisms representing new phylogenetic lineages - Konstantin Miroshnikov (Institute of bioorganic chemistry RAS, Moscow)
Bacteriophage genomics: Prospects of the NexGen sequencing approach - Olga Averina (Vavilov Institute of General Genetics RAS, Moscow)
Complete genome sequence of Bifidobacterium longum GT15: comparative genomic analysis, global regulatory genes, unique genes - Alexandr Manolov (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
De Novo assembly and comparative analysis of the genome of the bacteria P. stutzeri KOS6 isolated from hydrocarbon sludge - Ivan Bodoev (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
Секвенирование и de-novo сборка геномной ДНК штамма Neisseria gonorrhoeae k51.05 - Vladislav Babenko (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
A combination of different approaches for improve sequencing assembly bacterial genome,for example Spiroplasma melliferum
NGS and data analysis
- Alla Lapidus (Dobzhansky Center for Genome Bioinformatics, SPbU , Russia)
Genome assembly and finishing – why hight quality references are needed - Marta Matvienko (CLC Bio, USA)
Sequencing sample prep and data assembly methods: 15 years of accelerated evolution - Marie-Theres Gansauge (Max Planck Institute for Evolutionary Anthropology, Germany)
Methods for ancient DNA sequencing - Andrey Przhibelskiy (St Petersburg Academic University, St.Petersburg)
Genome draft assembly algorithms: from the very beginning till present-day problems - Elena Kostryukova (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
Effects of sample-preparation stage on results of metagenomic analysis after shotgun sequencing - Igor Morozov (Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk)
The importance of library fragments size for the quality of emulsion PCR dependent MPSS data - Dmitry Shtokalo (A.P.Ershov Institute of Informatics Systems SB RAS, Novosibirsk)
Very long intergenic non-coding RNA (vlincRNA) discovery in NGS data - Olga Golosova (NCIT “UNIPRO”, Novosibirsk)
Analysis of Next-Generation Sequencing Data with UGENE - Fedor Kolpakov (Design Technological Institute of Digital Techniques of SB RAS, Novosibirsk)
BioUML – software platform for analysis of next generation sequencing data using collaborative and reproducible research
Medical genomics
- Vadim Stepanov (Research Institute of Medical Genetics SB RAMS, Tomsk)
High-throughput SNP genotyping: decanalization of immune response during human dispersal - Alexandr Tyacht (Research Institute of Physico-Chemical Medicine FMBA, Moscow)
Temporal evolution of gut microbiota composition during cancer treatment in pediatric patients as identitified by metagenomic analysis - Dmitry Baryakin (Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk)
Small non-coding RNAs of human blood plasma - Anna Savelyeva (Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk)
Ribonucleic acid composition of extracellular vesicles from healthy donor’s blood - Ekaterina Trifonova (Research Institute of Medical Genetics SB RAMS, Tomsk)
Identification of the pathophysiological mechanisms of preeclampsia by genome-wide expression analysis - Maria Nazarenko (Research Institute of Medical Genetics SB RAMS, Tomsk)
Microarray analysis of the DNA methylation profile of vascular tissues and whole blood from patients with atherosclerosis - Olga Saik (Institute of Cytology and Genetics of SB RAS, Novosibirsk)
Analysis of RNASeq digital gene expression for expanding disease “associome” reconstructed based on information stored in databases