{"id":25,"date":"2023-01-18T11:25:51","date_gmt":"2023-01-18T04:25:51","guid":{"rendered":"https:\/\/conf.icgbio.ru\/hsg2013\/?page_id=25"},"modified":"2023-09-07T13:17:25","modified_gmt":"2023-09-07T06:17:25","slug":"scientific-program","status":"publish","type":"page","link":"https:\/\/conf.icgbio.ru\/hsg2013\/en\/scientific-program\/","title":{"rendered":"Scientific program"},"content":{"rendered":"<p><strong>General Conference Schedule<\/strong><\/p>\n<p>&nbsp;<\/p>\n<table border=\"1\" width=\"539\" cellspacing=\"1\" cellpadding=\"10\">\n<tbody>\n<tr>\n<td><\/td>\n<td><strong>July, 21<\/strong><\/td>\n<td><strong>July, 22<\/strong><\/td>\n<td><strong>July, 23<\/strong><\/td>\n<td><strong>July, 24<\/strong><\/td>\n<td><strong>July, 25<\/strong><\/td>\n<\/tr>\n<tr>\n<td>Morning<\/td>\n<td><\/td>\n<td colspan=\"1\" rowspan=\"2\">Genomics of eukaryotes<\/td>\n<td>Metagenomics<\/td>\n<td colspan=\"1\" rowspan=\"2\">NGS and data analysis<\/p>\n<p>Poster Session<\/td>\n<td>Medical genomics<\/p>\n<p>Closing ceremony<\/td>\n<\/tr>\n<tr>\n<td>Afternoon<\/td>\n<td>Opening ceremony<\/td>\n<td>Genomics of bacteria and viruses<\/td>\n<td><\/td>\n<\/tr>\n<tr>\n<td>Cultural events<\/td>\n<td>Welcome party<\/td>\n<td><a href=\"https:\/\/conf.icgbio.ru\/hsg2013\/cultural_program\/\">ZOO<\/a><\/td>\n<td><a href=\"https:\/\/conf.icgbio.ru\/hsg2013\/cultural_program\/\">Ballet<\/a><\/td>\n<td><a href=\"https:\/\/conf.icgbio.ru\/hsg2013\/cultural_program\/\">Geological Museum<\/a><\/p>\n<p>Banquet<\/td>\n<td><\/td>\n<\/tr>\n<\/tbody>\n<\/table>\n<p><strong>Preliminary list of lectures:<\/strong><\/p>\n<p><strong>Genomics of eukaryotes<\/strong><\/p>\n<ul>\n<li><a href=\"https:\/\/jgi.doe.gov\/our-science\/scientists-jgi\/igor-grigoriev\/\" target=\"_blank\" rel=\"noopener\">Igor Grigoryev<\/a>\u00a0(DOE Joint Genome Institute, USA)<br \/>\nFungal genomics for Energy and Environment<\/li>\n<li><a href=\"https:\/\/www.uni-goettingen.de\/en\/414626.html\" target=\"_blank\" rel=\"noopener\">Konstantin Krutovsky<\/a>\u00a0(Georg-August-University of G\u00f6ttingen, Germany)<br \/>\nTargeted and complete genome de novo sequencing in conifer trees with giant and complex genomes<\/li>\n<li><a href=\"https:\/\/www.eva.mpg.de\/genetics\/advanced-dna-sequencing-techniques\/overview\" target=\"_blank\" rel=\"noopener\">Matthias Meyer<\/a><a href=\"http:\/\/depts.washington.edu\/microobs\/pLudmilaChistoserdova.php\">\u00a0<\/a>(Max Planck Institute for Evolutionary Anthropology,\u00a0Germany)<br \/>\nArchaic Genomes<\/li>\n<li>Ancha Baranova (George Mason University, USA)<br \/>\nWe know it all: what is next? Protein-centric analysis of publicly available PPI data for functionally diverse KCTD family as an example<\/li>\n<li>Alexandr\u00a0Graphodatsky\u00a0(Institute for Molecular and Cellular Bbiology SB RAS, Novosibirsk)<br \/>\nChromosomal organization of mammalian genomes<\/li>\n<li>Anna\u00a0Druzhkova\u00a0(Institute for Molecular and Cellular Biology SB RAS, Novosibirsk)<br \/>\nAnalysis of equid fossil DNA from the Denisova cave using throughput sequencing platforms<\/li>\n<li>Alexey Moskalev (Institute of Biology of the Komi Science Centre of the Ural,\u00a0Syktyvkar)<br \/>\nTranscriptome \u0441hange of adult Drosophila melanogaster after exposure to gamma-radiation, 2,3,7,8-tetrachlorodibenzo-p-dioxin, toluene and formaldehyde<\/li>\n<li>Fatima Smagulova (European University of Brittany, France)<br \/>\nGenome wide mapping of meiotic recombination hotspots in mice<\/li>\n<li>Ekaterina Loseva\u00a0(Institute of \u0421hemical Biology and Fundamental\u00a0 Medicine of SB RAS, Novosibirsk)<br \/>\nCharacterization of genomic DNA fragments generated during apoptosis<\/li>\n<li>Vladimir Trifonov (Institute for Molecular and Cellular Biology SB RAS, Novosibirsk)<br \/>\nThe study of reptile sex chromosome evolution by high-throughput sequencing of chromosome specific libraries<\/li>\n<li>Victoria Mironova (Institute of Cytology and Genetics,\u00a0Novosibirsk)<br \/>\n\u0410\u0443\u043a\u0441\u0438\u043d-\u0437\u0430\u0432\u0438\u0441\u0438\u043c\u044b\u0435 \u0438\u0437\u043c\u0435\u043d\u0435\u043d\u0438\u044f \u0442\u0440\u0430\u043d\u0441\u043a\u0440\u0438\u043f\u0442\u043e\u043c\u0430 \u043a\u043e\u0440\u043d\u0435\u0439\u00a0 Arabidopsis thaliana L.<\/li>\n<\/ul>\n<p><strong>Metagenomics<\/strong><\/p>\n<ul>\n<li><a href=\"http:\/\/depts.washington.edu\/microobs\/pLudmilaChistoserdova.php\" target=\"_blank\" rel=\"noopener\">Ludmila Chistoserdova<\/a>\u00a0(University of Washington, USA)<br \/>\nUsing Metagenomics for understanding functionality of complex microbial communities<\/li>\n<li>Evgeny\u00a0Andronov (All-Russia Research Institute for Agricultural Microbiology,\u00a0St.Petersburg)<br \/>\nNew approaches for analyses of soil microbiome<\/li>\n<li>AnnaPopenko\u00a0(Research Institute of Physico-Chemical Medicine\u00a0FMBA, Moscow)<br \/>\nSpecial traits of russian gut microbiome: functional analysis and cross-national comparative study<\/li>\n<li>Alexandr Zelenin (Research Institute of Physico-Chemical Medicine FMBA,\u00a0Moscow)<br \/>\n\u0421\u0442\u0440\u0443\u043a\u0442\u0443\u0440\u0430 \u0431\u0430\u043a\u0442\u0435\u0440\u0438\u0430\u043b\u044c\u043d\u043e\u0433\u043e \u0441\u043e\u043e\u0431\u0449\u0435\u0441\u0442\u0432\u0430 \u043f\u0438\u0449\u0435\u0432\u0430\u0440\u0438\u0442\u0435\u043b\u044c\u043d\u043e\u0433\u043e \u0442\u0440\u0430\u043a\u0442\u0430 \u043a\u0440\u0438\u043f\u0442\u043e\u0431\u0438\u043e\u0442\u0438\u0447\u0435\u0441\u043a\u043e\u0439 \u0445\u0438\u0440\u043e\u043d\u043e\u043c\u0438\u0434\u044b Polypedilum vanderplanki \u0441 \u043f\u043e\u0437\u0438\u0446\u0438\u0438 \u043c\u0435\u0442\u0430\u0433\u0435\u043d\u043e\u043c\u043d\u043e\u0433\u043e \u0430\u043d\u0430\u043b\u0438\u0437\u0430.<\/li>\n<li>Vitaly Kadnikov (Center &#8220;Bioengineering&#8221; RAS,\u00a0Moscow)<br \/>\n\u041c\u0435\u0442\u0430\u0433\u0435\u043d\u043e\u043c\u043d\u044b\u0439 \u0430\u043d\u0430\u043b\u0438\u0437 \u043c\u0438\u043a\u0440\u043e\u0431\u043d\u043e\u0433\u043e \u0441\u043e\u043e\u0431\u0449\u0435\u0441\u0442\u0432\u0430 \u0433\u043b\u0443\u0431\u0438\u043d\u043d\u043e\u0433\u043e \u043f\u043e\u0434\u0437\u0435\u043c\u043d\u043e\u0433\u043e \u0442\u0435\u0440\u043c\u0430\u043b\u044c\u043d\u043e\u0433\u043e \u043c\u0435\u0441\u0442\u043e\u043e\u0431\u0438\u0442\u0430\u043d\u0438\u044f \u0432 \u0417\u0430\u043f\u0430\u0434\u043d\u043e\u0439 \u0421\u0438\u0431\u0438\u0440\u0438.<\/li>\n<\/ul>\n<p><strong>Genomics of bacteria and viruses<\/strong><\/p>\n<ul>\n<li>Nikolay Ravin (Center &#8220;Bioengineering&#8221; RAS,\u00a0Moscow)<br \/>\nSequencing of genomes of extremophilic microorganisms representing new phylogenetic lineages<\/li>\n<li>Konstantin\u00a0Miroshnikov\u00a0 (Institute of bioorganic chemistry RAS,\u00a0Moscow)<br \/>\nBacteriophage genomics: Prospects of the NexGen sequencing approach<\/li>\n<li>Olga Averina\u00a0 (Vavilov Institute of General Genetics RAS,\u00a0Moscow)<br \/>\nComplete genome sequence of Bifidobacterium longum GT15: comparative genomic analysis, global regulatory genes, unique genes<\/li>\n<li>Alexandr Manolov (Research Institute of Physico-Chemical Medicine FMBA,\u00a0Moscow)<br \/>\nDe Novo assembly and comparative analysis of the genome of the bacteria P. stutzeri KOS6 isolated from hydrocarbon sludge<\/li>\n<li>Ivan Bodoev (Research Institute of Physico-Chemical Medicine FMBA,\u00a0Moscow)<br \/>\n\u0421\u0435\u043a\u0432\u0435\u043d\u0438\u0440\u043e\u0432\u0430\u043d\u0438\u0435 \u0438 de-novo \u0441\u0431\u043e\u0440\u043a\u0430 \u0433\u0435\u043d\u043e\u043c\u043d\u043e\u0439 \u0414\u041d\u041a \u0448\u0442\u0430\u043c\u043c\u0430 Neisseria gonorrhoeae k51.05<\/li>\n<li>Vladislav Babenko (Research Institute of Physico-Chemical Medicine FMBA,\u00a0Moscow)<br \/>\nA combination of different approaches for improve sequencing assembly bacterial genome,for example Spiroplasma melliferum<\/li>\n<\/ul>\n<p><strong>NGS and data analysis<\/strong><\/p>\n<ul>\n<li><a href=\"https:\/\/cab.spbu.ru\/employees\/alla-lapidus\/\" target=\"_blank\" rel=\"noopener\">Alla Lapidus<\/a>\u00a0(Dobzhansky Center for Genome Bioinformatics, SPbU , Russia)<br \/>\nGenome assembly and finishing &#8211; why hight quality references are needed<\/li>\n<li>Marta Matvienko\u00a0(CLC Bio, USA)<br \/>\nSequencing sample prep and data assembly methods: 15 years of accelerated evolution<\/li>\n<li><a href=\"https:\/\/www.eva.mpg.de\/genetics\/advanced-dna-sequencing-techniques\/overview\" target=\"_blank\" rel=\"noopener\">Marie-Theres Gansauge<\/a><a href=\"http:\/\/depts.washington.edu\/microobs\/pLudmilaChistoserdova.php\">\u00a0<\/a>(Max Planck Institute for Evolutionary Anthropology,\u00a0Germany)<br \/>\nMethods for ancient DNA sequencing<\/li>\n<li><a href=\"http:\/\/bioinf.spbau.ru\/members\/andrey-prjibelski\" target=\"_blank\" rel=\"noopener\">Andrey\u00a0Przhibelskiy<\/a>\u00a0(St Petersburg Academic University,\u00a0St.Petersburg)<br \/>\nGenome draft assembly algorithms: from the very beginning till present-day problems<\/li>\n<li>Elena Kostryukova (Research Institute of Physico-Chemical Medicine FMBA, Moscow)<br \/>\nEffects of sample-preparation stage on results of metagenomic analysis after shotgun sequencing<\/li>\n<li>Igor Morozov (Institute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk)<br \/>\nThe importance of library fragments size for the quality of emulsion PCR dependent MPSS data<\/li>\n<li>Dmitry\u00a0Shtokalo\u00a0(A.P.Ershov Institute of Informatics Systems SB RAS,\u00a0Novosibirsk)<br \/>\nVery long intergenic non-coding RNA (vlincRNA) discovery in NGS data<\/li>\n<li>Olga Golosova\u00a0 (NCIT &#8220;UNIPRO&#8221;,\u00a0Novosibirsk)<br \/>\nAnalysis of Next-Generation Sequencing Data with UGENE<\/li>\n<li>Fedor Kolpakov (Design Technological Institute of Digital Techniques of SB RAS,\u00a0Novosibirsk)<br \/>\nBioUML \u2013 software platform for analysis of next generation sequencing data using collaborative and reproducible research<\/li>\n<\/ul>\n<p><strong>Medical genomics<\/strong><\/p>\n<ul>\n<li>Vadim Stepanov (Research Institute of Medical Genetics SB RAMS, Tomsk)<br \/>\nHigh-throughput SNP genotyping: decanalization of immune response during human dispersal<\/li>\n<li>Alexandr Tyacht (Research Institute of Physico-Chemical Medicine FMBA,\u00a0Moscow)<br \/>\nTemporal evolution of gut microbiota composition during cancer treatment in pediatric patients as identitified by metagenomic analysis<\/li>\n<li>Dmitry\u00a0Baryakin\u00a0(Institute of Chemical Biology and Fundamental Medicine SB RAS,\u00a0Novosibirsk)<br \/>\nSmall non-coding RNAs of human blood plasma<\/li>\n<li>Anna Savelyeva (Institute of Chemical Biology and Fundamental Medicine SB RAS,\u00a0Novosibirsk)<br \/>\nRibonucleic acid composition of extracellular vesicles from healthy donor&#8217;s blood<\/li>\n<li>Ekaterina Trifonova\u00a0(Research Institute of Medical Genetics SB RAMS, Tomsk)<br \/>\nIdentification of the pathophysiological mechanisms of preeclampsia by genome-wide expression analysis<\/li>\n<li>Maria Nazarenko\u00a0(Research Institute of Medical Genetics SB RAMS, Tomsk)<br \/>\nMicroarray analysis of the DNA methylation profile of vascular tissues and whole blood from patients with atherosclerosis<\/li>\n<li>Olga Saik\u00a0 (Institute of Cytology and Genetics of SB RAS,\u00a0Novosibirsk)<br \/>\nAnalysis of RNASeq digital gene expression for expanding disease \u201cassociome\u201d reconstructed based on information stored in databases<\/li>\n<\/ul>\n<p><\/p>","protected":false},"excerpt":{"rendered":"<p>General Conference Schedule &nbsp; July, 21 July, 22 July, 23 July, 24 July, 25 Morning Genomics of eukaryotes Metagenomics NGS and data analysis Poster Session Medical genomics Closing ceremony Afternoon Opening ceremony Genomics of bacteria and viruses Cultural events Welcome &hellip; <a href=\"https:\/\/conf.icgbio.ru\/hsg2013\/en\/scientific-program\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":13,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/conf.icgbio.ru\/hsg2013\/en\/wp-json\/wp\/v2\/pages\/25"}],"collection":[{"href":"https:\/\/conf.icgbio.ru\/hsg2013\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/conf.icgbio.ru\/hsg2013\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/hsg2013\/en\/wp-json\/wp\/v2\/users\/13"}],"replies":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/hsg2013\/en\/wp-json\/wp\/v2\/comments?post=25"}],"version-history":[{"count":6,"href":"https:\/\/conf.icgbio.ru\/hsg2013\/en\/wp-json\/wp\/v2\/pages\/25\/revisions"}],"predecessor-version":[{"id":139,"href":"https:\/\/conf.icgbio.ru\/hsg2013\/en\/wp-json\/wp\/v2\/pages\/25\/revisions\/139"}],"wp:attachment":[{"href":"https:\/\/conf.icgbio.ru\/hsg2013\/en\/wp-json\/wp\/v2\/media?parent=25"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}