{"id":20,"date":"2021-08-26T15:15:58","date_gmt":"2021-08-26T08:15:58","guid":{"rendered":"https:\/\/conf.icgbio.ru\/sbb2013\/?page_id=20"},"modified":"2021-08-30T13:21:40","modified_gmt":"2021-08-30T06:21:40","slug":"scientific_program","status":"publish","type":"page","link":"https:\/\/conf.icgbio.ru\/sbb2013\/en\/scientific_program\/","title":{"rendered":"Scientific program"},"content":{"rendered":"

SCIENTIFIC PROGRAM
\n5th International Young Scientists School
\n\u00abSystem Biology and Bioinformatics\u00bb, SBB\u20192013<\/strong><\/p>\n

Institute of Cytology and Genetics SB RAS
\nChair of Informational Biology of Natural Sciences Department (NSU)
\nScientific Council on the Genetics and Breeding RAS
\nVavilov Society of Geneticists and Breeders<\/strong><\/p>\n

Novosibirsk, Russia,\u00a0June 23-26, 2013
\nConference Hall of the Institute of Cytology and Genetics SB RAS<\/strong><\/p>\n

Prospekt Lavrentyeva 10<\/strong><\/p>\n

Languages: English, Russian<\/p>\n

Science sections:
\n1) Development biology and stem cells
\n2) Neurobiology
\n3) Human origin and evolution. Paleogenomics
\n4) Bioinformatics and analysis of genome sequencing data<\/strong>
\nOutstation School meeting (June 26-30) \u201cProspects of System Biology, Ethnogenomics and Paleogenomics\u201d<\/p>\n

The main problem of system biology is the complex experimental and computational study of patterns in organization and function of biological systems on the molecular-genetic, cell, tissue, organ levels on the base of information encoded by genomes. The every past International Young Scientists School of System Biology was oriented to the most important issues of its time. In the preservation and development of this tradition SBB\u20192013 is devoted to Bioinformatics and System Biology with the focus on such actual problems like: (1) development biology with the emphasis on the stem cells; (2) neurobiology using the organization of molecular-genetic systems of brain and cognitive processes; (3) human origin and evolution according to the latest discoveries in Archeology and Paleogenomics; (4) Bioinformatics and analysis of the whole genome sequencing data using high performance supercomputers. The results of the latest research in these fields will be presented on the SBB\u20192013.<\/p>\n

 <\/p>\n

22 June 2013, Saturday\u00a0<\/strong>– arrival, registration start<\/strong>
\n18-00 \u2013 21-00 Registration<\/strong>\u00a0in the hotel “Zolotaya Dolina”<\/p>\n

 <\/p>\n

23 June 2013, Sunday<\/strong><\/p>\n

9.00-10.00\u00a0 Registration<\/strong><\/p>\n

10.00-10.30 Official opening ceremony.<\/strong>
\n\u2022 Academician N.A. Kolchanov, ICG SB RAS, Novosibirsk, Russia
\n\u2022 Prof. K.V. Anokhin, National Research Centre “Kurchatov Institute”, Moscow, Russia
\n\u2022 Prof. E.I. Rogaev, University of Massachusetts Medical School, Massachusetts, USA
\n\u2022 Prof. H. Bai, National University of Inner Mongolia, China<\/p>\n

10.30-13.05 MORNING SESSION. Lectures.
\nSection:\u00a0\u00a0 DEVELOPMENT BIOLOGY AND STEM CELLS<\/strong><\/p>\n

10.30-11.30<\/strong>
\n\u2022 Prof. S.L. Kiselev<\/strong>, M.A. Lagarkova, A.N. Bogomazova, M.V. Shutova, E. Nekrasov, V. Naumov, D. Ischenko, E. Kaznacheeva, V. Vigont
\nN.I. Vavilov Institute of General Genetics, Moscow, Russia
\n\u00abPluripotent stem cells\u00bb<\/p>\n

11.30-11.50 Coffee-break<\/strong><\/p>\n

11.50-12.35
\n\u2022 Prof. O.L. Serov<\/strong>, ICG SB RAS, Novosibirsk
\n\u00abEmbryonic stem cells: origin and properties\u00bb<\/p>\n

12.35-13.05
\n\u2022 S.P. Medvedev<\/strong>, S.M. Zakian, ICG SB RAS, Novosibirsk
\n\u00abNew methods of genome editing in pluripotent stem cells\u00bb<\/p>\n

13.05-14.30\u00a0 Lunch<\/strong>\u00a0(the bus to the Academgorodok mall; the bus to ICG at 14.15)<\/p>\n

14.30-16.10 DAY SESSION. Lectures<\/strong>.
\nSection:\u00a0\u00a0 DEVELOPMENT BIOLOGY AND STEM CELLS (CONTINUE)<\/strong><\/p>\n

14.30-15.20
\n\u2022 Prof. N.N. Dygalo<\/strong>, ICG SB RAS, Novosibirsk
\n\u00abInformation content of signal molecule: humoral code\u00bb<\/p>\n

15.20-16.10
\n\u2022 Prof. M.G. Samsonova<\/strong>, St.Petersburg State Polytechnic University, St.Petersburg
\n\u00abVariability and robustness in biological systems\u00bb<\/p>\n

16.10-16.40 Coffee-break. Poster session<\/strong><\/p>\n

16.40-18.10 Short reports<\/strong><\/p>\n

16.40-17.10
\n\u2022 E.V. Dementieva<\/strong>, E.V. Grigor\u2019eva, A.V. Vyalkova, S.P. Medvedev, A.I. Shevchenko, S.M. Zakian, ICG SB RAS, Novosibirsk
\n\u00abStudying long QT syndrome using patient-specific induced pluripotent stem cells\u00bb<\/p>\n

17.10-17.40
\n\u2022 I.S. Zakharova<\/strong>, ICG SB RAS, Novosibirsk
\n\u00abDirected vascular differentiation of human stem cells for application in engineering of vascular grafts\u00bb<\/p>\n

17.40-18.10
\n\u2022 Battulin N.R.<\/strong>, ICG SB RAS, Novosibirsk
\n\u00ab3D organization of stem cell genome\u00bb<\/p>\n

18.30-20.00 Welcome party (ICG Hall)<\/strong><\/p>\n

 <\/p>\n

24 June 2013, Monday<\/strong><\/p>\n

9.30-13.00 MORNING SESSION. Lectures.
\nSection:\u00a0\u00a0 NEUROBIOLOGY AND COGNITIVE PROCESSES<\/strong><\/p>\n

9.30-10.30
\n\u2022 Prof. K.V. Anokhin<\/strong>, National Research Centre “Kurchatov Institute”, Moscow
\n\u00abMolecular, cellular and systemic neuroscience of memory\u00bb<\/p>\n

10.30-11.00 Coffee-break<\/strong><\/p>\n

11.00-12.00\u00a0<\/strong>(changed)<\/u>
\n\u2022 Prof. A.M. Samsonov<\/strong>, S.A. Rukolaine, Ioffe Physical Technical Institute, St.-Petersburg
\n\u00abModeling of transport process in biological systems\u00bb<\/p>\n

12.00-13.00
\n\u2022 Prof. T.V. Chernigovskaya<\/strong>, St.Petersburg State University, St.Petersburg
\n\u00abNeuroscience in the XXI Century: How can we study language and mind?\u00bb<\/p>\n

13.00-14.00 Lunch<\/strong><\/p>\n

14.00-16.30 DAY SESSION. Lectures.
\nSection:\u00a0\u00a0 NEUROBIOLOGY AND COGNITIVE PROCESSES (CONTINUE)<\/strong><\/p>\n

14.00-15.00
\n\u2022 Prof. A.S. Ratushnyak<\/strong>, Design Technological Institute of Digital Techniques SB RAS, Novosibirsk
\n\u00abThe molecular function of the neuron cognitive reactions\u00bb<\/p>\n

15.00-16.00
\n\u2022 Prof. E.E. Vityaev<\/strong>, Sobolev Institute of Mathematics, Novosibirsk
\n\u00abNeuroinformatics. Mathematical models of learning neuron, the functional systems and animat models\u00bb<\/p>\n

16.00-16.30
\n\u2022 Prof. E.K. Khusnutdinova<\/strong>, Ufa Institute of Biochemistry and Genetics, Ufa Scientific Centre of Russian Academy of Sciences, Ufa, Russia
\n\u00abGenetics of personality traits and aggressive behavior\u00bb<\/p>\n

16.30-17.00 Coffee-break. Poster session<\/strong><\/p>\n

16.30-18.30 Presentations by young scientists. Short reports. Contest. Part I.<\/strong><\/p>\n

17.00-17.20
\n\u2022 Kao L.P.<\/strong>, Ovchinnikov D.A., Prescott M., Tra T., Turner J.P., Cooper-White J.J., Wolvetang E.J.
\nAustralian Institute for Bioengineering and Nanotechnology; the University of Queensland, St Lucia, Australia
\n\u00abRegulation of mitochondrial biogenesis in human embryonic stem cells\u00bb<\/p>\n

17.20-17.40
\n\u2022 Ilyaskin A.V.<\/strong>
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n\u00abExperimental and theoretical study of water and electrolyte balance of renal collecting duct principal cells\u00bb<\/p>\n

17.40-18.00
\n\u2022 Demin A.V<\/strong>., Vityaev E.E.
\nA.P. Ershov Institute of Informatics Systems SB RAS, Novosibirsk, Russia
\n\u00abLearning of locomotion and chemotaxis in 3D model of the C. elegans nematode\u00bb<\/p>\n

18.00-18.20
\n\u2022 Maksimova \u041a.Y.<\/strong>
\nSiberian State Medical University, Tomsk, Russia
\n\u00abNeuronal loss in senescence-accelerated OXYS rats hippocampus: histological examination\u00bb<\/p>\n

19.00-21.00 Social program. Football. NSU stadium.<\/strong><\/p>\n

 <\/p>\n

25 June 2013, Tuesday<\/strong><\/p>\n

9.30-13.00 MORNING SESSION. Lectures (changes in the morning session)
\nSection: HUMAN ORIGIN, EVOLUTION AND GENETIC VARIATION.<\/strong><\/p>\n

9.30-10.20<\/strong>
\n\u2022 Prof. N.K. Yankovsky<\/strong>, Vavilov Institute of General Genetics RAS, Moscow
\n\u00abGene Geography and Ethnography\u00bb<\/p>\n

10.20-10.50<\/strong>
\n\u2022 K.V. Gunbin<\/strong>, N.A. Kolchanov, ICG SB RAS, Novosibirsk
\n\u00abHigh throughput sequencing and computer analysis of molecular evolution on example of Homo Denisova genome\u00bb<\/p>\n

10.50-11.20 Coffee-break<\/strong><\/p>\n

11.20-12.10<\/strong>
\n\u2022\u00a0<\/strong>Prof. V.I. Molodin,\u00a0A.S. Pilipenko<\/strong>, Institute of Archeology and Ethnography SB RAS, ICG SB RAS, Novosibirsk
\n\u00abHuman origin and evolution\u00bb<\/p>\n

12.10-13.00
\n\u2022 Prof. E.I. Rogaev<\/strong>, University of Massachusetts Medical School, Massachusetts, USA
\n\u00abThe molecular mechanisms of Alzheimer’s disease\u00bb<\/p>\n

13.00-14.00 Lunch<\/strong><\/p>\n

14.00-18.30 DAY SESSION. Lectures.
\nSection: BIOINFORMATICS AND ANALYSIS OF GENOME SEQUENCING DATA<\/strong><\/p>\n

14.00-15.00
\n\u2022 Prof. Ming Chen<\/strong>, Zhejiang University, Hangzhou, China
\n\u00abTowards a microRNA interactome network\u00bb<\/p>\n

15.00-16.00
\n\u2022 Dr. N.N. Vtyurin<\/strong>, Moscow
\n\u00abProtein 3D-structure homology modeling based on their amino acid sequence. Myths and Realities\u00bb<\/p>\n

16.00-16.30 Coffee-break<\/strong><\/p>\n

16.30-18.30 Presentations by young scientists. Short reports. Contest. Part II.<\/strong><\/p>\n

16.30-16.50
\n\u2022 Wang Y.<\/strong>, Chen M.
\nDepartment of Bioinformatics, College of Life Sciences, Zhejiang University, Hangzhou, China
\n\u00abAn evaluation of the software tools for plants microRNA deep-sequencing data analysis\u00bb<\/p>\n

16.50-17.10
\n\u2022 Jin D.<\/strong>, Zhao Y., Chen M.
\nDepartment of Bioinformatics, College of Life Sciences, Zhejiang University, Hangzhou, China
\n\u00abDifferential expression analysis of microRNAs in the root of M.truncatula when symbiosis with S.meliloti and G.intraradices\u00bb<\/p>\n

17.10-17.30
\n\u2022 Bari A.<\/strong>, Pinsky I., Sagaidak A.
\nAl-Farabi Kazakh National University, Almaty, Kazakhstan
\n\u00abBinding of miR396 family with mRNA of growth-regulating factors in rice and maize\u00bb<\/p>\n

17.30-17.50
\n\u2022 Berillo O.<\/strong>, Moldagalieva A., Baidildinova G.
\nNational nanotechnology laboratory, al-Farabi Kazakh National University, Almaty, Kazakhstan
\n\u00abMicroRNAs binding sites in mRNAs of some oncogenes\u00bb<\/p>\n

17.50-18.10
\n\u2022 Bogdanov M.R.<\/strong>, Zakharov A.V.
\nBashkir State Pedagogical University, Ufa, Russia
\n\u00abElectrocardiogram recognition with wavelet analysis\u00bb<\/p>\n

18.10-18.30
\nYazeva A.S.<\/strong>, Gorbunova V.Y., Vorobyova E. V.
\nBashkir State Pedagogical University named after M. Akmullah, Ufa, Russian Federation
\n\u00abExamination of the cardiovascular system and cell cycle genes interaction\u00bb<\/p>\n

19.00-21.00 Social program. Table tennis.<\/strong><\/p>\n

 <\/p>\n

26 June 2013, Wednesday<\/strong><\/p>\n

9.30-11.00 MORNING SESSION. BIOINFORMATICS AND ANALYSIS OF GENOME SEQUENCING DATA<\/strong><\/p>\n

9.30-10.00
\n\u2022 Dr. Palyanov A.Y.<\/strong>, A.P.Ershov Institute of Informatics Systems, Novosibirsk
\n\u00abBuilding computer simulation of C. elegans nematode to investigate its nervous system: results and perspectives\u00bb<\/p>\n

10.00-10.30
\n\u2022 Prof. A.V. Kukekova<\/strong>, L.N.Trut, Yu.E. Herbeck ICG SB RAS, Novosibirsk, Russia; University of Illinois, USA
\n\u00abNew sequencing technologies and transcriptome analysis\u00bb<\/p>\n

10.30-11.00
\n\u2022 Dr. K.N. Kozlov<\/strong>, St.Petersburg State Polytechnic University, St.Petersburg
\n\u00ab Model adaptation using Differential Evolution Entirely Parallel method\u00bb<\/p>\n

11.00-11.30 Coffee-break<\/strong><\/p>\n

11.30-13.10 Presentations by young scientists. Short reports. Contest. Part III.<\/strong><\/p>\n

11.30-11.50
\n\u2022 Vaskin Y.Y.<\/strong>, Khomicheva I.V., Vityaev E.E.
\nNovosibirsk State University, \u201cUniPro\u201d Company, Novosibirsk, Russia
\n\u00abRecognition of liver promoters with EXPERT DISCOVERY and UGENE integrated system\u00bb<\/p>\n

11.50-12.10
\n\u2022 Safronova N.S.<\/strong>, Orlov Y.L.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk State University, Novosibirsk, Russia
\n\u00abComputer programs for complexity estimation and oligonucleotide analysis of regulatory DNA\u00bb<\/p>\n

12.10-12.30
\n\u2022 Akinshin A.A.<\/strong>
\nAltai State Technical University, Barnaul, Russia
\n\u00abAnalysis of phase portraits in some gene networks models\u00bb<\/p>\n

12.30-12.50
\n\u2022 Ermak T.<\/strong>, Akberdin I., Timonov V., Khlebodarova T.M., Likhoshvai V.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n\u00abKiNET \u2013 a new web database on kinetics data and parameters for E.coli\u00bb<\/p>\n

12.50-13.10
\n\u2022 Komyshev E.G.<\/strong>, Genaev M.A., Afonnikov D.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nNovosibirsk State University, Novosibirsk, Russia
\n\u00abGeneration of web services – the unification of access to bioinformatics resources\u00bb<\/p>\n

13.10-14.00 Lunch<\/strong><\/p>\n

14.00-16.00 DAY SESSION.
\nPresentations by young scientists. Short reports. Contest. Part IV.<\/strong><\/p>\n

14.00-14.20
\n\u2022 Mulyukova R.V.<\/strong>, Vorobyova E.V., Gorbunova V.U.
\nBashkir State Pedagogical University named after M.Akmullah, Ufa, Russian Federation
\n\u00abThe functional role of genes involved in lipid metabolism in the course of metabolic syndrome\u00bb<\/p>\n

14.20-14.40
\n\u2022 Ponomarenko P.M.<\/strong>, Ponomarenko M.P., Kolchanov N.A., Eisenhaber B., Eisenhaber F.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nNovosibirsk State University, Novosibirsk, Russia
\nNational Research Centre “Kurchatov Institute”, Moscow, Russia
\nBioinformatics Institute, A*STAR, Singapore
\nDepartment of Biological Sciences, National University of Singapore
\nSchool of Computer Engineering, Nanyang Technological University, Singapore
\n\u00abHow multiple Nfat5 sites may impact to the Nfat5-inducible gene expression: an ill-posed inverse problem solution\u00bb<\/p>\n

14.40-15.00
\n\u2022 Saik O.V.<\/strong>, Demenkov P.S., Ivanisenko V.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n\u00abReconstruction of squamous cell carcinoma \u201cassociome\u201d based on analysis of differential gene expression according to RNAseq data and information stored in databases\u00bb<\/p>\n

15.00-15.20
\n\u2022 Savina M.S.<\/strong>, Mironova V.V., Akberdin I.R., Omelyanchuk N.A., Likhoshvai V.A.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nNovosibirsk State University, Novosibirsk, Russia
\n\u00abSystems biology analysis for promoter activities of genetic constructions from deletion and linker-scanning experiments\u00bb<\/p>\n

15.20-15.40
\n\u2022 Sokolov V.S.<\/strong>, Likhoshvai V.A., Matushkin Y.G.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\n\u00abGene expression and mRNA secondary structures in Mycoplasma strains\u00bb<\/p>\n

15.40-16.00
\n\u2022 Medvedev K.E.<\/strong>, Afonnikov D.A., Vorobjev Y.N.
\nInstitute of Cytology and Genetics SB RAS, Novosibirsk, Russia
\nNovosibirsk State University, Novosibirsk, Russia
\nInstitute of Chemical Biology and Fundamental Medicine SB RAS, Novosibirsk, Russia
\n\u00abMolecular dynamics simulation analysis of influence of high temperature and high pressure on the NIP7 proteins from the hyperthermophilic Archaea\u00bb<\/p>\n

16.00-16.10 Coffee-break
\n16.10-16.30 Practical class<\/strong>
\n\u2022 Dr. Y.L. Orlov<\/strong>, D.A. Afonnikov, ICG SB RAS, Novosibirsk
\n\u00abComputer databases for genome data analysis\u00bb
\n16.30-17.10 Practical class
\n\u2022 Tiys E.S.<\/strong>, ICG SB RAS, Novosibirsk
\n\u00abDesign and analysis of genetic association networks. Computer system ANDVisio\u00bb<\/p>\n

17.10-17.50
\nExcursion<\/strong>\u00a0(short walk) for young scientists and participants to SPF-vivarium and Siberian Supercomputer Center (SSCC SB RAS).
\nExcursion to Geology museum<\/p>\n

School summary (estimation and voting for best young scientist presentation)<\/strong><\/p>\n

18.00-18.30
\nClosing ceremony
\nNomination and awards for top reports by young scientists<\/strong><\/p>\n

 <\/p>\n

June 26-30<\/strong><\/p>\n

Outstation school meeting
\n\u201cPROSPECTS OF SYSTEM BIOLOGY, ETHNOGENOMICS AND PALEOGENOMICS\u201d<\/strong><\/p>\n

The meeting is devoted to the problems of systems biology and bioinformatics teaching. There will be considered new scientific disciplines \u2013 Ethnogenomics and Paleogenomics related to genomic research and sequencing of ancient DNA analysis of hominid evolution and modern humans and the use of molecular biology and bioinformatics.<\/p>\n

Outstation School meeting program
\n\u2022 Prof. V.I. Molodin, Institute of Archeology and Ethnography, Novosibirsk
\n\u2022 Prof. A.P. Derevjanko, Institute of Archeology and Ethnography, Novosibirsk
\n\u2022 Prof. E.K. Khusnutdinova, Institute of Biochemistry and genetics, Ufa
\n\u2022 Prof. K.V. Anokhin, National Research Centre “Kurchatov Institute”, Moscow
\n\u2022 Prof. T.V. Chernigovskaya, Saint Petersburg State University, St.Petersburg
\n\u2022 Prof. M.G. Samsonova, St. Petersburg State Polytechnic University, St.Petersburg
\n\u2022 Prof. A.M. Samsonov, Ioffe Physical Technical Institute, St.Petersburg
\n\u2022 Prof. N.K. Yankovsky, Vavilov Institute of General Genetics RAS, Moscow<\/p>","protected":false},"excerpt":{"rendered":"

SCIENTIFIC PROGRAM 5th International Young Scientists School \u00abSystem Biology and Bioinformatics\u00bb, SBB\u20192013 Institute of Cytology and Genetics SB RAS Chair of Informational Biology of Natural Sciences Department (NSU) Scientific Council on the Genetics and Breeding RAS Vavilov Society of Geneticists … Continue reading →<\/span><\/a><\/p>\n","protected":false},"author":13,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/conf.icgbio.ru\/sbb2013\/en\/wp-json\/wp\/v2\/pages\/20"}],"collection":[{"href":"https:\/\/conf.icgbio.ru\/sbb2013\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/conf.icgbio.ru\/sbb2013\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/sbb2013\/en\/wp-json\/wp\/v2\/users\/13"}],"replies":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/sbb2013\/en\/wp-json\/wp\/v2\/comments?post=20"}],"version-history":[{"count":3,"href":"https:\/\/conf.icgbio.ru\/sbb2013\/en\/wp-json\/wp\/v2\/pages\/20\/revisions"}],"predecessor-version":[{"id":93,"href":"https:\/\/conf.icgbio.ru\/sbb2013\/en\/wp-json\/wp\/v2\/pages\/20\/revisions\/93"}],"wp:attachment":[{"href":"https:\/\/conf.icgbio.ru\/sbb2013\/en\/wp-json\/wp\/v2\/media?parent=20"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}