{"id":52,"date":"2018-02-27T07:11:47","date_gmt":"2018-02-27T04:11:47","guid":{"rendered":"http:\/\/conf.bionet.nsc.ru\/sbb2018\/?page_id=52"},"modified":"2021-05-21T13:19:13","modified_gmt":"2021-05-21T06:19:13","slug":"practical","status":"publish","type":"page","link":"https:\/\/conf.icgbio.ru\/sbb2018\/en\/practical\/","title":{"rendered":"Practical"},"content":{"rendered":"<p><\/p>\n<ul>\n<li><span style=\"color: #000000;\"><strong>Alexey Kolodkin<\/strong><\/span>, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam,\u00a0Holland<br \/>\n<span style=\"color: #000000;\"><strong>Olga Krebs<\/strong><\/span>, Heidelberg Institute for Theoretical Studies,\u00a0German<br \/>\n<span style=\"color: #3366ff;\">Systems biology and computer modeling in personalized medicine<\/span><\/li>\n<\/ul>\n<ul>\n<li><strong><span style=\"color: #000000;\">Maxim Zakharsev<\/span>, <\/strong>Norwegian University of Life Sciences, \u00c5s,\u00a0Norway<br \/>\n<span style=\"color: #0000ff;\">Topological analysis of the stoichiometric models of metabolic networks<\/span><\/li>\n<\/ul>\n<ul>\n<li><strong>Grosse Ivo<\/strong>, Halle-Wittenberg University, Halle,\u00a0German<br \/>\n<span style=\"color: #0000ff;\">Multiple Testing<\/span><\/li>\n<\/ul>\n<ul>\n<li><span style=\"color: #000000;\"><b>Petr Vlasov<\/b><\/span>, Institute of Science and Technology, Austria<br \/>\n<span style=\"color: #0000ff;\">Genetics of human diseases and Rational\u00a0 Drug Design<\/span><\/li>\n<\/ul>\n<ul>\n<li><strong><span style=\"color: #000000;\">Barberis Matteo<\/span><\/strong>, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam,\u00a0Holland<br \/>\n<span style=\"color: #0000ff;\">Modeling of cell cycle control<\/span><\/li>\n<\/ul>\n<ul>\n<li><span style=\"color: #000000;\"><strong>Dmitry Afonnikov<\/strong><\/span>, Institute of Cytology and Genetics of SB RAS, Novosibirsk State University, Novosibirsk, Russia<br \/>\n<span style=\"color: #0000ff;\">Introduction to molecular evolution<\/span><\/li>\n<\/ul>\n<ul>\n<li><span style=\"color: #000000;\"><strong>Anastasia Bakulina<\/strong><\/span>,\u00a0Novosibirsk State University, Novosibirsk, Russia<br \/>\n<span style=\"color: #0000ff;\">Homology modeling of proteins<\/span><\/li>\n<\/ul>\n<p><strong>Subject lessons &#8220;Homology modeling of proteins&#8221;:<br \/>\n<\/strong>The introduction of the\u00a0database of protein structures and classifications of PDB protein structures SCOP and CATH. The introduction of the\u00a0servers that help to build a model protein (Genesilico metaserver, Swiss-Model, I-tasser). Running of models of sequence on different servers.<br \/>\nWorking with the program of three-dimensional structures of proteins in PDB format (Accelrys Visualizer, PyMOL) view and theirs main features. The study of the PDB format.<br \/>\nStructural alignment. Comparison of the models obtained by different methods, and real structures. Using PyMOL and Accelrys Visualizer for preparing the illustrations.<\/p>\n<ul>\n<li><strong><span style=\"color: #000000;\">Saik Olga<\/span>,<\/strong>\u00a0Institute of Cytology and Genetics of SB RAS, Novosibirsk State University, Novosibirsk, Russia<strong>\u00a0<\/strong><br \/>\n<span style=\"color: #0000ff;\">Application of ANDSystem for the reconstruction and analysis of<\/span><br \/>\n<span style=\"color: #0000ff;\">molecular-genetics networks, associated with diseases and phenotypic traits<\/span><\/li>\n<\/ul>\n<p>What is needed for the practice:<\/p>\n<ol>\n<li>Laptop is desirable.<\/li>\n<li>Python 2.7 programming language (<a href=\"https:\/\/www.python.org\/download\/releases\/2.7\/\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/www.python.org\/download\/releases\/2.7\/<\/a>)<\/li>\n<li>Notepad ++ for Windows (<a href=\"https:\/\/notepad-plus-plus.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">https:\/\/notepad-plus-plus.org\/<\/a>) or Gedit for Linux (<a href=\"http:\/\/gedit.en.softonic.com\/\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/gedit.en.softonic.com\/<\/a>)<\/li>\n<li>ANDSystem available at <a href=\"http:\/\/www-bionet.sscc.ru\/andvisio\/\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/www-bionet.sscc.ru\/andvisio\/<\/a><\/li>\n<li>Cytoscape is an open source software platform for visualizing complex<br \/>\nnetworks (<a href=\"http:\/\/www.cytoscape.org\/\" target=\"_blank\" rel=\"noopener noreferrer\">http:\/\/www.cytoscape.org\/<\/a>)<\/li>\n<\/ol>\n<p><\/p>","protected":false},"excerpt":{"rendered":"<p>Alexey Kolodkin, Swammerdam Institute for Life Sciences, University of Amsterdam, Amsterdam,\u00a0Holland Olga Krebs, Heidelberg Institute for Theoretical Studies,\u00a0German Systems biology and computer modeling in personalized medicine Maxim Zakharsev, Norwegian University of Life Sciences, \u00c5s,\u00a0Norway Topological analysis of the stoichiometric models &hellip; <a href=\"https:\/\/conf.icgbio.ru\/sbb2018\/en\/practical\/\">Continue reading <span class=\"meta-nav\">&rarr;<\/span><\/a><\/p>\n","protected":false},"author":17,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/conf.icgbio.ru\/sbb2018\/en\/wp-json\/wp\/v2\/pages\/52"}],"collection":[{"href":"https:\/\/conf.icgbio.ru\/sbb2018\/en\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/conf.icgbio.ru\/sbb2018\/en\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/sbb2018\/en\/wp-json\/wp\/v2\/users\/17"}],"replies":[{"embeddable":true,"href":"https:\/\/conf.icgbio.ru\/sbb2018\/en\/wp-json\/wp\/v2\/comments?post=52"}],"version-history":[{"count":1,"href":"https:\/\/conf.icgbio.ru\/sbb2018\/en\/wp-json\/wp\/v2\/pages\/52\/revisions"}],"predecessor-version":[{"id":547,"href":"https:\/\/conf.icgbio.ru\/sbb2018\/en\/wp-json\/wp\/v2\/pages\/52\/revisions\/547"}],"wp:attachment":[{"href":"https:\/\/conf.icgbio.ru\/sbb2018\/en\/wp-json\/wp\/v2\/media?parent=52"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}