GENERAL SCHEDULE
MONDAY, AUGUST 24.
11.00-15.00 REGISTRATION
15.00-15.20 OPENING CEREMONY
15.20-19.45 EVENING SESSION
20.00-23.00 FOURCHETTE AT THE HOUSE OF SCIENTISTS
TUESDAY, AUGUST 25.
9.00-12.25 MORNING SESSION
LUNCH
14.00-15.30 EXCURSION TO THE BOTANY GARDEN OF SB RAS
15.30-19.25 EVENING SESSION
WEDNESDAY, AUGUST 26.
9.00-12.40 MORNING SESSION.
LUNCH
14.30-16.30 POSTER SESSION AND COMPUTER DEMONSTRATIONS.
16.30-21.30 NOVOSIBIRSK SIGHTSEEING TOUR.
THURSDAY, AUGUST 27.
9.00-13.10 MORNING SESSION.
LUNCH
14.00-15.00 EXCURSION TO THE GEOLOGICAL MUSEUM OF SB RAS.
15.00-19.25 EVENING SESSION.
CLOSING CEREMONY.
20.00-22.00 RECEPTION AT THE INSTITUTE OF CYTOLOGY AND GENETICS; SEEING MOVIES ABOUT IC&G.
THE INFORMATION ON THE ROUND TABLE DISCUSSIONS “BIOINFORMATICS OF HUMAN GENOME” AND “APBIONET- THE ASIA-PACIFIC BIOINFORMATICS NETWORK” WILL BE ANNOUNCED.
THE BGRS’98 SCHEDULE OF ORAL PRESENTATIONS
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24 AUGUST |
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15.00-15.20 OPENING CEREMONY CHAIRPERSONS: N.A. KOLCHANOV AND V.V. SOLOVYEV SPEECH OF WELCOM: L.L. KISSELEV, HEAD OF THE NATIONAL RUSSIAN HUMAN GENOME PROJECT |
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15.20-19.45 EVENING SESSION (SMALL HALL) DATABASES ON REGULATORY GENOMIC SEQUENCES, REGULATORY PROTEINS AND GENE NETWORKS. CHAIRPERSONS: P. BUCHER AND M. TOMITA |
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| 15.20-15.55 | PLENARY LECTURE (TO BE ANNOUNCED) | G.C. OVERTON |
| 15.55-16.20 | A PROMOTER DATABASE OF YEAST SACCHAROMYCES CEREVISIAE (SCPD), J. ZHU AND M.Q. ZHANG | M.Q. ZHANG |
| 16.20-16.45 | DEVELOPMENT OF A RECEPTOR DATABASE, K. NAKATA, T. TAKAI AND T. KAMINUMA | K. NAKATA |
| 16.45-17.10 | TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0, N.A. KOLCHANOV, E.V. IGNATIEVA, O.V. KEL-MARGOULIS, A.E. KEL, E.A. ANANKO., O.A. PODKOLODNAYA, I.L. STEPANENKO, T.I. MERKULOVA, T.N. GORYACHKOVSKAYA, F.A. KOLPAKOV, N.L. PODKOLODNY, S.V. LAVRYUSHEV, D.A. GRIGOROVICH, A.S. FROLOV, A.G. ROMASHCHENKO | E.V. IGNATIEVA |
| 17.10-17.35 | RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS, M.P. PONOMARENKO, A.S. FROLOV, J.V. PONOMARENKO, O.A. PODKOLODNAYA, D.V. VOROBYEV, N.A. KOLCHANOV, AND G.C. OVERTON | M.P. PONOMARENKO |
| 17.35-17.55 | COFFEE BREAK | |
| 17.55-18.15 | GENOMES DATA IN ENTREZ: REPRESENTATION AND ANALYSIS, T.A. TATUSOVA, J. OSTELL | T.A. TATUSOVA |
| 18.15-18.40 | GENET, A DATABASE OF GENETIC NETWORKS, M.G. SAMSONOVA, E.G. SAVOSTYANOVA, V.N. SEROV, A.V. SPIROV, J. REINITZ | M.G. SAMSONOVA |
| 18.40-19.05 | GENE NETWORKS: A DATABASE AND ITS AUTOMATED VISUALIZATION THROUGH THE INTERNET IN THE GENENET COMPUTING SYSTEM , E.A. ANANKO, F.A. KOLPAKOV, G.B. KOLESOV, AND N.A. KOLCHANOV | E.A. ANANKO |
| 19.05-19.25 | COMPEL: A DATABASE ON COMPOSITE REGULATORY ELEMENTS, O.V. KEL-MARGOULIS, A.E. KEL, M. FRISCH, A.G. ROMASCHENKO, N.A. KOLCHANOV AND E. WINGENDER | O.V. KEL-MARGOULIS |
| 19.25-19.45 | COMPARATIVE COMPUTER ANALYSIS OF TRANSCRIPTION REGULATORY REGIONS OF EUCARYTIC GENES, F.A. KOLPAKOV AND G.B. KOLESOV | F. KOLPAKOV |
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25 AUGUST 9.00-12.25 MORNING SESSION (SMALL HALL) GENE NETWORKS, MODELLING OF METABOLIC PATHWAYS/RESPONSE CHAIRPERSONS: M.Q. ZHANG AND V.V. SOLOVYEV |
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| 9.00-9.45PLENARY LECTURE | THEORY OF MOLECULAR GENETIC REGULATORY SYSTEMS (MGRS): KEY IDEAS AND RESULTS, V.A. RATNER | V.A. RATNER |
| 9.45-10.10 | A VIRTUAL CELL WITH 127 GENES, M. TOMITA, K. HASHIMOTO, K. TAKAHASHI, T. SHIMIZU, Y. MATSUZAKI, F. MIYOSHI, K. SAITO, S. TANIDA, K. YUGI, J.C. VENTER AND C. A. HUTCHISON | M. TOMITA |
| 10.10-10.35 | FLOWER MORPHOGENESIS IN ARABIDOPSIS THALIANA: A LOGICAL ANALYSIS, L. MENDOZA, E. ALVAREZ-BUYLLA AND D. THIEFFRY | D. THIEFFRY |
| 10.35-11.00 | MODELLING SIGNAL PATHWAYS, S. BENTOLILA | S. BENTOLILA |
| 11.00-11.20 | COFFEE BREAK | |
| 11.20-11.45 | THE EQUATIONS OF DYNAMICS OF GENES ACTIVITIES IN A GENERAL VIEW, R.N. TCHURAEV | R.N. TCHURAEV |
| 11.45-12.05 | LARGE SCALE SCREENING FOR TRANSCRIPTION REGULATORY SEQUENCES RECOGNISED BY HOX HOMEODOMAIN PROTEINS, L.M. JAKT AND M.H. SHAM | L.M. JAKT |
| 12.05-12.25 | ANALYSIS OF COMPLETED GENOMES SUGGESTS THAT HAIRPIN FORMATION IS NOT A UNIVERSAL MECHANISM FOR PROCARYOTIC TRANSCRIPTION TERMINATION, T. WASHIO, M. TOMITA | T. WASHIO |
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15.30-19.25 EVENING SESSION (SMALL HALL) REGULATORY GENOMIC SEQUENCES: COMPUTER ANALYSIS AND RECOGNITION, MOLECULAR MECHANISM OF FUNCTIONING CHAIRPERSONS: G.C. OVERTON AND E.N. TRIFONOV |
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| 15.30-16.15PLENARY LECTURE | A MODULAR METAPROFILE-BASED SYSTEM FOR PREDICTION AND ANALYSIS OF EUKARYOTIC PROMOTERS, T. JUNIER, A. KROGH, P. BUCHER | P. BUCHER |
| 16.15-16.40 | COMBINATORIAL IDENTIFICATION OF PROMOTERS INDUCED UPON IMMUNE CELL ACTIVATION, A.E. KEL, O.V. KEL-MARGOULIS, V.BABENKO, E.WINGENDER | A.E. KEL |
| 16.40-17.05 | IDENTIFYING DNA AND PROTEIN PATTERNS WITH STATISTICALLY SIGNIFICANT ALIGNMENT MATRICES, G.Z. HERTZ AND G.D. STORMO | G.Z. HERTZ |
| 17.05-17.30 | COMPUTER ANALYSIS OF TRANSCRIPTION REGULATORY PATTERNS IN COMPLETELY SEQUENCED BACTERIAL GENOMES, M.S.GELFAND AND A.A.MIRONOV | M.S. GELFAND |
| 17.30-17.50 | COFFEE BREAK | |
| 17.50-18.15 | EXTRACTING KOZAK CONSENSUS SEQUENCE USING KLEISLI, J. CHEN, N.-H. CHUA, D. STRAUSS, L. WONG | L. WONG |
| 18.15-18.40 | GENEEXPRESS SYSTEM: DESCRIPTION, ANALYSIS, AND RECOGNITION OF REGULATORY SEQUENCES IN EUKARYOTIC GENOMES, N.A. KOLCHANOV, M.P. PONOMARENKO, YU.V. KONDRAKHIN, A.S. FROLOV, F.A. KOLPAKOV, A.E. KEL, O.V. KEL-MARGOULIS, E.A. ANANKO, E.V. IGNATIEVA, O.A. PODKOLODNAYA, I.L. STEPANENKO, T.I. MERKULOVA, V.N. BABENKO, D.G. .VOROBIEV, S.V. LAVRYUSHEV, J.V. PONOMARENKO, A.V. KOCHETOV, G.B. KOLESOV, N.L. PODKOLODNY, E. WINGENDER, T. HAINEMEIER, L. MILANESI, V.V. SOLOVYEV, G.C. OVERTON | N.A. KOLCHANOV |
| 18.40-19.05 | A NEW CUT-OFF ESTIMATING ALGORITHM FOR TRANSCRIPTION FACTOR BINDABILITY ON DNA, T.TSUNODA, T.TAKAGI | T. TSUNODA |
| 19.05-19.25 | ON NEGATIVE SELECTION AGAINST ATG TRIPLETS NEAR START CODONS IN EUCARYOTIC AND PROCARYOTIC GENOMES, R. SAITO , M. TOMITA | R. SAITO |
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26 AUGUST 9.00-12.40 MORNING SESSION (SMALL HALL) GENE RECOGNITION AND ANALYSIS; GENERAL PROBLEMS OF COMPUTATIONAL GENOMICS CHAIRPERSONS: M.S. GELFAND AND V.B. BAJIC |
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| 9.00-9.45PLENARY LECTURE | A NEW METHOD OF SPECTRAL ANALYSIS OF DNA/RNA AND PROTEIN SEQUENCES, V.B. BAJIC, I.V. BAJIC, W. HIDE | V.B. BAJIC |
| 9.45-10.10 | PREDICTION OF PROMOTER LOCATION AND MULTIPLE GENES IN GENOMIC DNA. V.V. SOLOVYEV | V.V. SOLOVYEV |
| 10.10-10.35 | ASYMMETRICAL CODING SEQUENCE REPARTITION AND CODON ADAPTATION INDEX VALUES BETWEEN LEADING AND LAGGING STRANDS IN SEVEN BACTERIAL SPECIES, G. PERRIERE, J.R. LOBRY | G. PERRIERE |
| 10.35-11.00 | SEQUENCE ALIGNMENT WITHOUT GAP PENALTIES, M.A. ROYTBERG, M.N. SEMIONENKOV, O.YU. TABOLINA | M.A. ROYTBERG |
| 11.00-11.20 | COFFEE BREAK | |
| 11.20-11.40 | MAXIMUM ENTROPY PRINCIPLE AND MEASUREMENT OF INFORMATION CONTENT OF GENETIC TEXT, N.N. BUGAENKO, A.N. GORBAN, M.G. SADOVSKY | N.N. BUGAENKO |
| 11.40-12.05 | SELF-ORGANIZING NEURAL NETWORKS HIGHLIGHT POSSIBLE FUNCTIONALLY RELEVANT REGIONS IN THE C-DNA CODING SEQUENCES OF G-PROTEIN COUPLED RECEPTORS, R. CASADIO, P. ARRIGO AND P. FARISELLI | R. CASADIO |
| 12.05-12.20 | PROMOTERS: AT/GC CONTENT AND PROPERTIES OF TATA BOX, P. KOSAREV, V. BABENKO, M. PONOMARENKO | V. BABENKO |
| 12.20-12.40 | WEBGENE: INTERACTIVE TOOLS FOR PREDICTION AND ANALYSIS OF PROTEIN-CODING GENES STRUCTURE IN INTERNET, L. MILANESI, I. B. ROGOZIN, D. D’ANGELO | L. MILANESI |
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9.00-12.30 MORNING SESSION (GUEST HALL) BIOINFORMATICS AND EXPERIMENTAL MOLECULAR BIOLOGY CHAIRPERSONS: R.L. TATUSOV AND E.V. KOROTKOV |
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| 9.00-9.30 | THE BASIC PRINCIPLES OF DNA RECOGNITION BY SEQUENCE DEPENDENT AND INDEPENDENT ENZYMES, G.A. NEVINSKY, N.L. VINOGRADOVA, D.V. BUGREEV, A. A. ISHENKO, E. L. VASYUTINA, N. P. UL’YANOVA, O. D. ZAKHAROVA, T. I. KOLOCHEVA | G.A. NEVINSKY |
| 9.30-9.55 | EUKARYOTIC MRNAS ENCODING ABUNDANT AND SCARCE PROTEINS ARE DISSIMILAR IN MANY STRUCTURAL FEATURES OF 5’-UNTRANSLATED LEADERS, A.V. KOCHETOV, M.P. PONOMARENKO, D.G. VOROBIEV, A.S. FROLOV, L.L. KISSELEV, N.A. KOLCHANOV | A.V. KOCHETOV |
| 9.55-10.20 | OCT PROTEINS AND OCT GENES: DNA RECOGNITION AND TRANSCRIPTIONAL REGULATION, O. L.POLANOVSKY, E.V. PANKRATOVA, A. G.STEPCHENKO | O.L. POLANOVSKY |
| 10.20-10.45 | GENE RECOGNITION USING EST DATA: UNEXPECTEDLY FREQUENT ALTERNATIVE SPLICING OF HUMAN GENES, A.A. MIRONOV AND M.S. GELFAND | A.A. MIRONOV |
| 10.45-11.05 | QUANTITATIVE COMPUTER-ASSISTED ANALYSIS OF THE TATA-BINDING PROTEIN AFFINITY FOR COMPLEMENTARY DUPLEXES OF SYNTHETIC OLIGODEOXYRIBONUCLEOTIDES, L.K. SAVINKOVA, A.A. SOKOLENKO. V.A. RAU, V.F. KOBZEV, M.P. PONOMARENKO, J.V. PONOMARENKO, N.A. KOLCHANOV | L.K. SAVINKOVA |
| 11.05-11.25 | COFFEE BREAK | |
| 11.25-11.45 | THE GLUCOCORTICOID-CONTROLLED GENE REGULATORY REGIONS DATABASE (GR-TRRD): THE USING FOR THE ELUCIDATION OF THE MECHANISMS OF CHEMICAL HEPATOCARCINOGENS ACTION, T.I. MERKULOVA, V.M. MERKULOV, K.Y. KROPATCHEV, V.I. KALEDIN | T.I. MERKULOVA |
| 11.45-12.05 | THE LEUCINE MOTIF IN SUBUNITS 6 AND 9 OF PLANT MITOCHONDRIAL ATP SYNTHASE PROVIDING PRESUMABLY THE ASSEMBLY OF THE MEMBRANE PART OF THE ENZYME, YU.M. KONSTANTINOV, A.SH. ARZIEV AND V.A PODSOSONNY | YU.M. KONSTANTINOV |
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27 AUGUST 9.00 – 13.10 MORNING SESSION (SMALL HALL) COMPARATIVE AND EVOLUTIONARY GENOMICS CHAIRPERSONS: I.A. ZAKHAROV AND T. TSUNODA |
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| 9.00-9.45PLENARY LECTURE | HOW BASICS OF PROTEIN EVOLUTION COULD HELP THE GENE FINDING, E. N. TRIFONOV | E. N. TRIFONOV |
| 9.45-10.10 | A NATURAL TAXONOMY OF GENE FAMILIES FROM COMPLETE GENOMES, R.L. TATUSOV, E.V. KOONIN, D.J. LIPMAN | R.L. TATUSOV |
| 10.10-10.35 | THEATRE: A NOVEL TOOL FOR THE COMPARATIVE INVESTIGATION AND DISPLAY OF EVOLUTIONARY DIVERSITY OF FUNCTIONAL AND STRUCTURAL FEATURES IN DNA SEQUENCES, Y. J. K. EDWARDS, M. FRITH, G. ELGAR AND M. J. BISHOP | Y.J.K. EDWARDS |
| 10.35-11.00 | REGRESSION ANALYSIS OF MUTATIONAL SPECTRA, I.B. ROGOZIN AND V.B. BERIKOV | I.B.ROGOZIN |
| 11.00-11.20 | COFFEE BREAK | |
| 11.20-11.40 | GENOME HOMOLOGY AND CHROMOSOMAL PHYLOGENETICS – COMPARATIVE COMPUTER ANALYSIS, I.A.ZAKHAROV | I.A.ZAKHAROV |
| 11.40-12.05 | MOLECULAR DATABASE INTEGRATION: ANALYSIS OF METABOLIC NETWORK CONTROL, A. FREIER, M. HODING, R. HOFESTADT, M .LANGE, U. SCHOLZ | R. HOFESTADT |
| 12.05-12.30 | THREE SUBFAMILIES OF SHORT INTERSPERSED ELEMENTS OF THE DOG GENOME: POSSIBLE ORIGIN AND FUNCTIONS, N.N. KOLESNIKOV, I.B. ROGOZIN, M.V. LAVRENTIEVA, E.A. ELISAPHENKO | N.N. KOLESNIKOV |
| 12.30-12.50 | THEORETICAL ANALYSIS OF MUTATION PATTERN OF THE CYTOCHROME P450 SUPERFAMILY, YU.G. MATUSHKIN, I.N. MOROZOVA, P.S. MOROZOV | YU.G. MATUSHKIN |
| 12.50-13.10 | LATENT PERIODICITY OF PROTEIN SEQUENCES, E.V. KOROTKOV AND M.A. KOROTKOVA | E.V. KOROTKOV |
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15.00-19.25 EVENING SESSION (SMALL HALL) PROTEIN STRUCTURE ANALYSIS CHAIRPERSONS: N. ALEXANDROV AND M.P. LEFRANC |
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| 15.00-15.45PLENARY LECTION | IMGT ALGORITHM AND RULES FOR IMMUNOGLOBULIN AND T-CELL RECEPTOR MOTIF RECOGNITION, V. GIUDICELLI, D. CHAUME, G. MENNESSIER, AND M.-P. LEFRANC | M.-P. LEFRANC |
| 15.45-16.10 | MODERN STATISTICAL APPROACHES FOR AIMS OF PROTEIN FOLD RECOGNITION. V.G.TUMANYAN, SH.R.SUNYAEV, I.V.RODCHENKOV, F.EISENHABER, E.N.KUZNETSOV | V.G.TUMANYAN |
| 16.10-16.35 | DETECTION OF SIMILAR PROTEINS BY THE INVERSE-FOLDING PROTOCOL, M. OTA AND K. NISHIKAWA | K. NISHIKAWA |
| 16.35-17.00 | PROTEIN DOMAIN STRUCTURES, ITS HIERARCHY AND RELATION TO COOPERATIVE AND FUNCTIONAL PROPERTIES. N.G. ESIPOVA, I.N. BEREZOVSKY | N.G. ESIPOVA |
| 17.00-17.25 | STRUCTURAL AND FUNCTIONAL ANNOTATION OF GENOMIC SEQUENCES: ASSIGNMENT OF FOLD FAMILY AND SORTING OF PROTEINS WITH RESPECT TO SUBCELLULAR LOCALIZATION, F. EISENHABER, P. BORK, M. HUYNEN, C. ORENGO, J. SCHULTZ, S.R. SUNYAEV, Y. YUAN | F. EISENHABER |
| 17.25-17.45 | COFFEE BREAK | |
| 17.45-18.10 | ANALYSIS OF TRANSCRIPTIONAL FACTORS IN E. COLI, E. PEREZ-RUEDA, J. VAN HELDEN, S. WODAK, AND J. COLLADO-VIDES | E. PEREZ-RUEDA |
| 18.10-18.35 | FUNCTIONAL RELATIONSHIP BETWEEN AMINO ACID RESIDUES AT N- AND C-TERMINI OF DNA-BINDING REGIONS OF TRANSCRIPTION FACTORS CREB AND AP-1 REVEALED BY ANALYSING THE PAIR CORRELATIONS OF AMINO ACID SUBSTITUTIONS, D.A. AFONNIKOV, I.I. TITOV | D.A. AFONNIKOV |
| 18.35-19.00 | THE SEQUENCE PATTERN FOR THE GLYCOSYLPHOSPHATIDYL-ANCHOR POSTTRANSLATIONAL MODIFICATION AND ITS RECOGNITION IN PROPROTEIN SEQUENCES, B. EISENHABER | B. EISENHABER |
| 19.00-19.25 | NUMBER OF STRUCTURAL FAMILIES IN THE PROTEIN UNIVERSE, N. ALEXANDROV, N. GO | N. ALEXANDROV |
THE BGRS’98 LIST OF POSTER PRESENTATIONS AND COMPUTER DEMOS
WEDNESDAY, AUGUST 26, 15.00-17.00
PNN – POSTER NUMBER
CD – COMPUTER DEMONSTRATION WILL BE PRESENTED
| P1 | HOX-PRO DB: THE WAYS OF EVOLUTION OF ENSEMBLES OF HOMEOBOX GENES-CONTROLLERS OF DEVELOPMENT, A.V. SPIROV |
| P2 | INTEGRATING OF KNOWLEDGE ON REGULATION OF MX1 PROTEIN INDUCTION AND ANTIVIRAL ACTION BY A MATHEMATICAL MODELLING APPROACH, S.I. BAZHAN, O.E. BELOVA |
| P3, CD | THE ESRG-TRRD: DATABASE OF GENES WITH SPECIFIC TRANSCRIPTION REGULATION IN ERYTHROID CELLS, O.A. PODKOLODNAYA, I.L. STEPANENKO |
| P4, CD | PLANT-TRRD DATABASE, T.N. GORYACHKOVSKY, E.A. ANANKO, S.E. PELTEK |
| P5, CD | THE LIPID METABOLISM TRANSCRIPTION REGULATORY REGIONS DATABASE (LM-TRRD): TRANSCRIPTION REGULATION OF LIPID METABOLISM GENES, E.V. IGNATIEVA |
| P6, CD | TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0, N.A. KOLCHANOV, E.V. IGNATIEVA, O.V. KEL-MARGOULIS, A.E. KEL, E.A. ANANKO., O.A. PODKOLODNAYA, I.L. STEPANENKO, T.I. MERKULOVA, T.N. GORYACHKOVSKAYA, F.A. KOLPAKOV, N.L. PODKOLODNY, S.V. LAVRYUSHEV, D.A. GRIGOROVICH, A.S. FROLOV, A.G. ROMASHCHENKO |
| P7, CD | EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION, C. STOECKERT, O.A.PODKOLODNAYA, A.E. KEL, B. BRUNK, J. HAAS., F. SALAS, I.L. STEPANENKO, E.B. IGNATIEVA, O.V. KEL, E.A. ANANKO, N.L. PODKOLODNY, G.C. OVERTON, N.A. KOLCHANOV |
| P8, CD | INTERFERON-INDUCIBLE GENES – TRANSCRIPTION REGULATORY REGIONS DATABASE (IIG-TRRD). E. A. ANANKO, S. I. BAZHAN, O.E. BELOVA |
| P9, CD | PROGRAMS FOR DATA INPUT TO THE TRANSCRIPTION REGULATORY REGIONS DATABASE, E.A. ANANKO, A.N. NAUMOCHKIN, O.N. FOKIN, AND A.S. FROLOV |
| P10, CD | GENE NETWORKS: A DATABASE AND ITS AUTOMATED VISUALIZATION THROUGH THE INTERNET IN THE GENENET COMPUTING SYSTEM , E.A. ANANKO, F.A. KOLPAKOV, G.B. KOLESOV AND N.A. KOLCHANOV |
| P11, CD | GENEEXPRESS SYSTEM: DESCRIPTION, ANALYSIS, AND RECOGNITION OF REGULATORY SEQUENCES IN EUKARYOTIC GENOMES, N. A. KOLCHANOV, M. P. PONOMARENKO, YU. V. KONDRAKHIN, A. S. FROLOV, F. A. KOLPAKOV, A. E. KEL, O. V. KEL-MARGOULIS, E. A. ANANKO, E.V. IGNATIEVA, O. A. PODKOLODNAYA, I. L. STEPANENKO, T. I. MERKULOVA, V. N. BABENKO, D.G. .VOROBIEV, S.V. LAVRYUSHEV, J. V. PONOMARENKO, A. V. KOCHETOV, G.B. KOLESOV, N.L. PODKOLODNY, E. WINGENDER, T. HAINEMEIER, L. MILANESI, V.V. SOLOVIEV, G.C. OVERTON |
| P12, CD | A SYSTEM FOR ACTIVATION OF THE TRRD DATABASE: FURTHER DEVELOPMENT OF GENEEXPRESS, A.S. FROLOV, S.V. LAVRYUSHEV, D.G. VOROBIEV, D.A. GRIGOROVICH |
| P13 | REGULATION MECHANISMS IN BIOLOGICAL SYSTEMS, N.A. KOLCHANOV, YU.G. MATUSHKIN, A.S. FROLOV |
| P14, CD | MGL: AN OBJECT-ORIENTED COMPUTER SYSTEM FOR MOLECULAR GENETIC DATA MANAGEMENT, ANALYSIS, AND VISUALIZATION, F.A. KOLPAKOV, V.N. BABENKO |
| P15 | NEW METHOD FOR THE STUDY OF THE MODULAR STRUCTURE OF TRANSCRIPTION REGULATORY REGIONS, G.B. KOLESOV, F.A. KOLPAKOV |
| P16 | RAPID ESTIMATES OF STATISTICAL SIGNIFICANCE OF THE PAIRWISE NUCLEOTIDE SEQUENCE ALIGNMENT, I.A. SELEDTSOV, F.A. KOLPAKOV |
| P17 | PROMOTERS: AT/GC CONTENT AND PROPERTIES OF TATA BOX, P.KOSAREV, V.BABENKO, M.PONOMARENKO |
| P18 | SEARCH FOR DEGENERATE OLIGONUCLEOTIDE MOTIFS IN TRANSCRIPTION FACTOR BINDING SITES AND EUKARYOTIC PROMOTERS (THE SYSTEM ARGO), VISHNEVSKY O.V., PODKOLODNAYA O.A., BABENKO V.N. |
| P19, CD | FINE STRUCTURE OF THE PROFILE OF BENDING STIFFNESS ENERGY OF NUCLEOSOMAL DNA, V.G. LEVITSKY |
| P20, CD | STRUCTURAL AND COMPOSITIONAL FEATURES OF 5’ UNTRANSLATED REGIONS OF HIGHER PLANT MRNAS, A.V. KOCHETOV, M.V. PILUGIN, F.A. KOLPAKOV, V.N. BABENKO, E.V. KVASHNINA, V. K. SHUMNY |
| P21, CD | SAMPLES AND ALIGNED: DATABASES FOR FUNCTIONAL SITE SEQUENCES, D.G. VOROBIEV, J.V. PONOMARENKO |
| P22 | REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES, M.P. PONOMARENKO, N.A. KOLCHANOV, J.V. PONOMARENKO, A.S. FROLOV, O.A. PODKOLODNAYA, D.V. VOROBIEV, N.L. PODKOLODNY, G.C. OVERTON |
| P23, CD | ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES, J.V. PONOMARENKO, D.P. FURMAN, T.M. MISHCHENKO, L.V. KATOKHINA, V.V. VALUEV, E.L. PEREGOEDOVA, A.S. FROLOV, N.L. PODKOLODNY, M.P. PONOMARENKO |
| P24 | CLASSIFICATION OF EUKARYOTIC TRANSCRIPTION FACTORS BASED ON SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THEIR BINDING SITES, J.V. PONOMARENKO |
| P25, CD | B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES, M.P. PONOMARENKO, A.S. FROLOV, J.V. PONOMARENKO, D.V. VOROBYEV, V.G. LEVITSKY, O.A. PODKOLODNAYA, G.C. OVERTON, N.A. KOLCHANOV |
| P26, CD | SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THE DNA TOPOISOMERASE I SITES, M.P. PONOMARENKO, D.G. VOROBIEV, J.V. PONOMARENKO, F.E. KUZIN, A.D. GRUZDEV, N.A. KOLCHANOV |
| P27, CD | RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS, M.P. PONOMARENKO, A.S. FROLOV, J.V. PONOMARENKO, O.A. PODKOLODNAYA, D.V. VOROBYEV, N.A. KOLCHANOV, AND G.C. OVERTON |
| P28, CD | MGL-PROT: THE ANTHOLOGY-BASED QUERY LANGUAGE FOR THE USER SEARCH FOR THE 3D STRUCTURES AND FUNCTIONS OF PROTEINS IN THE WWW-AVAILABLE DATABASES, F.A. KOLPAKOV, E.A. ANANKO, G.B. KOLESOV, A.S. FROLOV, N.A. KOLCHANOV, N.L. PODKOLODNY |
| P29, CD | LIKENESS: A SYSTEM SEARCHING FOR AND ALIGNING SIMILAR PROTEIN CONFORMATIONS, M.P. PONOMARENKO, N.A. KOLCHANOV, I. SHINDYALOV, P. BOURNE |
| P30 | AUTOMATIC GENERATION OF RECOGNITION PROGRAMS FOR AMINO ACID SEQUENCES, V.P. VALUEV, D.A. KUROPATOV, M.P. PONOMARENKO |
| P31, CD | STATISTICAL RELATION BETWEEN THE POSITIONS OF THE ALPHA-HELIX IN THE ZINC-FINGER DNA-BINDING DOMAIN: RESULTS FROM THE PHAGE DISPLAY DATA ANALYSIS, D.A. AFONNIKOV, E. WINGENDER |
| P32 | FUNCTIONAL RELATIONSHIP BETWEEN AMINO ACID RESIDUES AT N- AND C-TERMINI OF DNA-BINDING REGIONS OF TRANSCRIPTION FACTORS CREB AND AP-1 REVEALED BY ANALYSING THE PAIR CORRELATIONS OF AMINO ACID SUBSTITUTIONS, D.A. AFONNIKOV, I.I. TITOV |
| P33, CD | BIOINFORMATICS FOR HUMANITARIANS, M.P. PONOMARENKO, I.V. ISHCHENKO, A.S. FROLOV, J.V. PONOMARENKO, N.A. KOLCHANOV, YU.I. MIKHAILOV, A.V. MININA, S.A. IVASHIN |
| P34 | BUSINESS GAME “EQUILIBRIUM” FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW, M.P. PONOMARENKO, I.V. ISHCHENKO, A.S. FROLOV, A.V. MININA, YU.I. MIKHAILOV, S.A. IVASHIN |
| P35 |
THE PRACTICAL STUDY OF THE BEHAVIOR OF THE COMPLEX DYNAMIC SYSTEMS ON THE BASIS OF THE “LIFE” GAME FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW, D.AFONNIKOV, A.V. MININA, YU.I. MIKHAILOV, S.A. IVASHIN |
| P36 | BUSINESS GAME “HUMAN GENOME” FOR EDUCATION IN BUSINESS, LAW AND NEGOTIATION, M.P. PONOMARENKO, A.S. FROLOV, J.V. PONOMARENKO, A.V. MININA, YU. I. MIKHAILOV |
| P37 | RECOGNITION OF THE SUBSET OF EUKARYOTIC PROMOTERS, YU. KONDRAKHIN, G.C. OVERTON |
| P38 | GENETIC LEVEL OF BIOPROCESSES REGULATION AND BIOSYSTEMS IN EXTREME CONDITIONS, V.P. NEFEDOV, E.YU. CHEREPANOVA |
| P39 | MOLECULAR MECHANISMS OF PROMOTER-POLYMERASE RECOGNITION. ELECTROSTATIC INTERACTIONS IN PROMOTERS RECOGNIZED BY E.COLI E(70, S.G. KAMZOLOVA, T.R. DZHELYADIN, A.A. SOROKIN, N.N. IVANOVA, G.I. KUTUZOVA, N.G. ESIPOVA, R.V. POLOZOV |
| P40 | IN SILICO IDENTIFICATION OF MARS/SARS IN DNA SEQUENCES, G.V. GLAZKO, I.B. ROGOZIN, M.V. GLAZKOV |
| P41 | SEARCHING FOR IMMUNOGLOBULIN SUPERFAMILY GENES IN C.ELEGANS, A.V. TARANIN, I.B ROGOZIN |
| P42 | ANALYSIS OF FUNCTIONAL SITE MOTIFS OF MOBILE GENETIC ELEMENTS RELATIVE TO THEIR POSSIBLE MOLECULAR FUNCTIONS, V.G. AMIKISHIEV, V.A. RATNER |
| P43 | COMPUTER ANALYSIS OF BASE PAIRING FREE-ENERGY BETWEEN SHINE-DALGARNO SEQUENCE AND 16S RRNA SEQUENCE IN VARIOUS PROCARYOTES, Y. OSADA, R. SAITO AND M. TOMITA |
| P44 | A THREE-LAYER MODEL FOR DESCRIBING DEVELOPMENT OF C.ELEGANS, T. KAMINUMA, T. IGARASHI,T. NAKANO, S. SASAKI, AND J. MIWA |
| P45 | CONSERVED RNA STRUCTURES REGULATE INITIATION OF TRANLSATION OF ESCERICHIA COLI AND HAEMOPHILUS INFLUENZAE RIBOSOMAL PROTEIN OPERONS, A. VITRESCHAK, A.K. BANSAL, M.S. GELFAND |
| P46 | SOME PROBLEMS OF GENE RECOGNITION IN PROTIST DNA, T.V. ASTAKHOVA, M.S. GELFAND, M.A. ROYTBERG |
| P47 | SEGMENTATION OF YEAST DNA USING HIDDEN MARKOV MODELS, L. PESHKIN, M.S. GELFAND |
| P48 | TRIPLET PERIODICITY OF THE DNA CODING AND NONCODING REGIONS, V.M. RUDENKO, E.V. KOROTKOV |
| P49 | A PROBABLE MUTUAL RELATIONSHIP BETWEEN LATENT PERIODIC GENE STRUCTURE AND PERIODIC CONFORMATION OF THE PROTEIN, M.B. CHALEY AND E.V. KOROTKOV |
| P50 | SELECTIVE MODELS FOR MAPPING OF GENES IDENTIFIED IN RADIATION HYBRIDS, G. R. SVISCHEVA |
| P51 | MINIMUM ENTROPY PRINCIPLE AND CLASSIFICATION OF SYMBOLS FOR REVEALING STATISTICAL REGULARITIES IN A TEXT, N.N. BUGAENKO, A.N. GORBAN, A.N. SAPOZHNIKOV |
| P52 | AUTOMATIC CLASSIFICATION OF NUCLEOTIDE SEQUENCES AND ITS RELATION TO NATURAL TAXONOMY AND PROTEIN FUNCTION, A.N. GORBAN, T.G.POPOVA, M.G. SADOVSKY |
| P53 | CHARACTERIZATION OF THE COMPACT MODEL GENOME OF THE JAPANESE PUFFER FISH (FUGU RUBRIPES) USING A COSMID SEQUENCE SCANNING APPROACH, G. ELGAR, M. S. CLARK, Y. J. K. EDWARDS, S. MEEK, S. SMITH, Y. UMRANIA, S. WARNER, G. WILLIAMS, M. J. BISHOP |
| P54 | THEORETICAL ANALYSIS OF POSSIBLE EVOLUTIONARY TRENDS IN CODON DISTRIBUTION ALONG THE MRNA, V.A. LIKHOSHVAI, YU.G. MATUSHKIN |
| P55 | STATISTICAL MODEL OF DOUBLE HELIX GROWTH, I.I. TITOV |
| P56 | PREDICTING RNA FOLDING BY GENETIC ALGORITHM WITH LOCAL EXHAUSTION, I.I. TITOV, V..A. IVANISENKO, N.A. KOLCHANOV |
| P57 | INVARIANT SECONDARY STRUCTURE OF ALU REPEATS PREDETERMINES CLUSTERIZATION OF REGULATORY ELEMENTS IN HUMAN GENOME, V.M. BLINOV, D.L. UVAROV, S.M. RESENCHUK, G.B. CHIRIKOVA, L.L. KISSELEV |
| P58 | NEW FUNCTIONS OF P53 GENE: REGULATORY AND HYPERSENSITIVE SITES IN EXONS OF MUTANT P53 MRNA FORMS, V.M. BLINOV, S.M. RESENCHUK, G.B. CHIRIKOVA, N.A. PETROV, A.A. PUZYREV, S.F. ORESHKOVA, V.N. KUVSHINOV, A.A. ILYICHEV, A.G. ROMASHCHENKO, YA.S. RUZANKINA, YU.A. MARTYNOV, S.S. VINOGRADOV, M.I. VOEVODA, E.I. KARAKIN, K.S. VARDASANIDZE, L.L. KISSELEV, R.A. MARTYNYUK, L.S. SANDAKHCHIEV |
| P59 | STRUCTURE-FUNCTIONAL HOMOLOGY OF THE PROKARYOTIC AND EUKARYOTIC RNA POLYMERASES, L.K. SAVINKOVA, A.A. SOKOLENKO, V.M. SEDOVA, V.A. RAU, I.I TULOKHONOV, V.F. KOBZEV, T.V. ARSHINOVA |
| P60 | INTERPRETATION OF X-RAY ANALYSIS DATA OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THERMODYNAMICAL AND KINETICAL INVESTIGATION OF THE ENZYME, D.V. BUGREEV, E.L. VASYUTINA, V.N. BUNEVA, G.A. NEVINSKY |
| P61 | LACTOFERRIN IS A NEW TRANSCRIPTIONAL FACTOR HAVING MANY DIFFERENT UNIQUE BIOLOGICAL FUNCTIONS, T.G. KANYSHKOVA, D.V. SEMENOV, V.N. BUNEVA, G.A. NEVINSKY |
| P62 | DISTURBANCES OF GENOM REGULATION AS THE CONSEQUENCE OF THE STRUCTURAL LIKENESS OF HIV-1 ENV PROTEINS AND HUMAN APOLIPOPROTEIN A-I, L.E. PANIN, V.A. LUKASHEV, O.I GIMAUTDINOVA |
| P63 | ANTIGENIC MIMICRY OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 AS A RESULT OF STRUCTURAL SIMILARITY OF PROTEIN GP120 AND HUMAN APOLIPOPROTEIN A-1, V.A. LUKASHEV, A.S. FROLOV, L.E. PANIN, O.I. GIMAUTDINOVA |
| P64 | THE SEQUENCING AND MOLECULAR ANALYSIS OF COXI GENE FRAGMENTS OF WILD PERENNIAL CROP ELYMUS SIBIRICUS L., I.V. FALSHINA, D.S. VERBITSKII, I.B. ROGOZIN, YU.M. KONSTANTINOV, E.L.TAUSON |
| P65 | INFOGENE: A DATABASE OF KNOWN GENE STRUCTURES AND PREDICTED GENES AND PROTEINS IN SEQUENCES OF GENOME SEQUENCING PROJECTS, V.V. SOLOVYEV AND A.A. SALAMOV |
| P66 | THE EFFICIENCY OF AN APPROXIMATION OF THE LIKELIHOOD BY CUTTING: DEPENDANCE ON A SIZE OF LOOPS IN A PEDIGREE, YU. S. AULCHENKO AND T. I. AXENOVICH |
| P67 | RECONSTRUCTION OF THE GENOFOND PECULIARITIES OF THE ANCIENT PAZYRYK POPULATION (I-II MILLENIUM BC) FROM GORNY ALTAI ACCORDING TO THE MTDNA STRUCTURE, M.I. VOEVODA, V.V. SITNIKOVA, A.G. ROMASHCHENKO, T.A. CHIKISHEVA, N.V. POLOS’MAK, V.I. MOLODIN |
| P68 | THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER, E. LIKHACHEVA, M. PONOMARENKO, S. BOGACHEV, E. KOKOZA, P. FISHER, J. PONOMARENKO, D. VOROBIEV, G. KOLESOV, N.A. KOLCHANOV |
| P69 | PRE-MRNA SPLICING IN EUKARYOTES – INTRON STRUCTURE, INTRON DETECTION, ALGORITHMS AND DATA STRUCTURES, D.S. CHEKMENEV |
| P70 | SPECIFIC FEATURES OF X-LINKED PROMOTER SEQUENCES IN DROSOPHILA, I. ARKHIPOVA |
| P71 | A PROGRAM FOR CALCULATING GAPPED DINUCLEOTIDE CORRELATIONS IN NUCLEIC ACID SEQUENCES AND ITS APPLICATION TO REVEAL SPECIFIC SEQUENCE FEATURES OF X-LINKED PROMOTERS IN DROSOPHILA, I.R. ARKHIPOVA AND S.V. POKROVSKI |
| P72 | DNA STRUCTURE IN HUMAN RNA POLYMERASE II PROMOTERS, A.G. PEDERSEN, P. BALDI, Y. CHAUVIN, AND S. BRUNAK |
| P73 | FUNCTIONAL ACTIVITY OF A NOVEL GCC-ELEMENT FOUND IN HOMOLOGOUS REGULATORY REGIONS OF SOME HUMAN GENES, A. PEREVOZCHIKOV, S. ORLOV |
| P74 | SOME PECULIARITIES OF LONG-RANGE INTERACTION BETWEEN NUCLEOTIDES IN THE INTRACELLULAR LIQUIDS, A.O. PINCHUK, V.I. VYSOTSKII |
| P75 | CONTEXT-FREE METHOD OF PATTERN RECOGNITION IN THE GENETIC TEXTS, N. AKBEROVA, A. KOLPAKOV, A. LEONTIEV |
| P76 | TOWARDS UNDERSTANDING OF REGULATION OF NON-LTR RETROTRANSPOSONS: RTE-1 ELEMENT OF THE NEMATODE CAENORHABDITIS ELEGANS. BEREZIKOV, A. BLINOV, G. BERGTROM |
| P77 | FROM GENOMICS TO EPIGENOMICS: DATA TRANSFERABILITY ACROSS THE EVOLUTIONARY SPECTRUM. G.L. GABOR MIKLOS |
| P78 | PROTEIN 3D ALIGNMENT SOFTWARE FOR INTEL COMPUTERS, N. VTYURIN, V. BATURIN, V. GULIN, N. GORYACHEV |
| P79 | USE OF BIOINFORMATICS IN DEVELOPMENT OF PEPTIDE VACCINE, A.S. KOLASKAR, U. KULKARNI-KALE AND M.M. GORE |
| P80 | SOME POSSIBLE ELEMENTS OF TRANSCRIPTION REGULATION OF RICE CHLOROPLAST ENCODED GENES, SHAHMURADOV I.A., MUSTAFAYEV N.Sh, ALIEV J.A. |
| CD | GENOMES DATA IN ENTREZ: REPRESENTATION AND ANALYSIS, T.A. TATUSOVA, J. OSTELL |
| CD | LARGE SCALE SCREENING FOR TRANSCRIPTION REGULATORY SEQUENCES RECOGNISED BY HOX HOMEODOMAIN PROTEINS, L.M. JAKT AND M.H. SHAM |