Program

 

Detailed scientific program of the School – file

We also attach a brief schedule of the School: English version, Russian version.

 

A list of the School’s lectures:

1. Ming Chen, Professor, Zhejiang University, Hangzhou, China
   Non-coding RNAs and Their Integrated Networks
2. Ming Chen, Professor, Zhejiang University, Hangzhou, China
   Genome-wide Multiple-level Integrated Biological Network of Rice
3. Ming Chen, Professor, Zhejiang University, Hangzhou, China
   Plant Omics Integration and Analysis Platform for Molecular Breeding – A Case Study
4. Afonnikov Dmitry, ICG SB RAS, Novosibirsk, Russia
   Automatic phenotyping of plants
5. Badayeva Ekaterina, The Vavilov Institute of General Genetics, Moscow, Russia
   Chromosome analysis in structural and functional studies of plant genome
6. Zemlyanskaya Elena, ICG SB RAS, Novosibirsk, Russia
   Metaanalysis of transcriptomic data
7. Perik-Zavodsky Roman, NIIKEL, Novosibirsk, Russia
   Integrative analysis of single cell transcriptome and proteome data using Seurat Weighted Nearest Neighbors
8. Lomzov Alexander, ICBFM SB RAS, Novosibirsk, Russia
   Modelling of Protein Spatial Structure by Molecular Dynamics Method
9. Maksim Patrin, LLC ‘Phenomika’, Moscow, Russia
   Phenomic plant breeding. Overview of technologies and current solutions in Russia
10. Kazantsev Fedor, ICG SB RAS, Novosibirsk, Russia
    Flux analysis of metabolic systems and processes
11. Kiseleva Antonina, ICG SB RAS, Novosibirsk, Russia
    Methods of genomic editing of plants
12. Klimenko Alexandra, ICG SB RAS, Novosibirsk, Russia
    Bioinformatic analysis of metagenomic data obtained by shotgun sequencing of random fragments (shotgun metagenomics)
13. Makarova Aelita, ICG SB RAS, Novosibirsk, Russia
    Biological databases for reconstruction of gene networks
14. Samsonova Maria, Peter the Great St. Petersburg Polytechnic University, St. Petersburg, Russia
    Genomic selection
15. Fishman Veniamin, ICG SB RAS, Novosibirsk, Russia
    Artificial Intelligence Methods in Life Sciences

 

The list of practical classes of the School:

• (1) Sidorchuk Yuri, Marenkova Tatiana, ICG SB RAS, Novosibirsk, Russia
  Methods of delivery of genetic constructs into cells for plant genome editing (12 hours: three stages of 4 hours each) 
  
• (2) Patrin Maksim, LLC ‘Phenomika’, Moscow, Russia
  Hyperspectral and multispectral plant analysis. MUSES-9HS portable cameras, Phenocheck (Spectricon, Greece) (2 hours)
  
• (4) Dolgikh Vladislav, ICG SB RAS, Novosibirsk, Russia
  From transcription factor binding motifs to gene expression. What can be learned from ChIP-seq experimental data (6 hours)
• (5) Klimenko Alexandra, ICG SB RAS, Novosibirsk, Russia
  – Workshop 1: Shotgun метагеномика: taxonomic analysis (2 hours)
  – Workshop 2: Shotgun метагеномика: functional analysis (2 hours)
• (6) Fishman Veniamin, ICG SB RAS, Novosibirsk, Russia
  Genome annotation with GENA Transformer (1,5 hours)
• (7) Kazantsev Fedor, ICG SB RAS, Novosibirsk, Russia
  Flux analysis of metabolic systems and processes (6 hours)
• (8) Makarova Aelita, ICG SB RAS, Novosibirsk, Russia
  Gene network reconstruction using ANDVisio software (3 hours)
• (9) Venzel Artur, ICG SB RAS, Novosibirsk, Russia
  Computational analysis and design of protein three-dimensional structures (4 hours)