Scientific program

You can download the program of the School SBB’2015 by the link: School Program (new, 20.06.2015) ,  Scientific program (new, 20.06.2015)

 

22 June, Monday

09:00-10:30  Registration / Morning coffee
10:30-10:45  Opening ceremony. Prof. Kolchanov N.A., Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
10:45-11:45  «Variable Order Bayesian Networks» Prof. Grosse I., Martin Luther University of Halle-Wittenberg, Germany
11:45-12:45  «Systems biology of programmed celldeath» Prof. Lavrik I.N., Otto von Guericke University Magdeburg Department of Translational Inflammation Research (Magdeburg), Germany
12:45-14:00  Lunch
14:00-15:00  «Breaking bad: modelling of fragmentation biases for NGS library preparations» Prof. R. te Boekhorst, University of Hertfordshire, Hatfield, UK
15:00-16:00  Poster session / Coffee break
16:00-18:00  Practical projects presentation, team formation
18:00             Welcome party

23 June, Tuesday

09:00-10:00  «Methods for estimating population divergence based on NGS (next generation sequencing) results and its’ application to studying microevolution (processes) in Baikal endemics» Shcherbakov D.Yu., Limnological Institute, Irkutsk, Russia
10:00-11:00  «Seeing triple: transcriptional coordination in the polyploid bread wheat genome» Mayer K., Helmholtz Zentrum Muenchen, Neuherberg, Germany
11:00-11:20  Coffee break
11:20-12:20  «System-biology approach to the study of yeast» Zakhartsev M., Hohenheim University, Institute of Plant Physiology and Biotechnology, Germany
12:20-13:30  Lunch
13:30-13.40  Seminar «Systems biology of programmed cell death» opening.
13:40-14:00  Small molecules as modulators of life/death decisions at target proteins of the DISC, Hillert I., Otto von Guericke University Magdeburg Department of Translational Inflammation Research (Magdeburg), Germany
14:00-14:20  The role of c-FLIP in NF-κB activation, Bollmann M., Otto von Guericke University Magdeburg Department of Translational Inflammation Research (Magdeburg), Germany
14:20-14:40  Activation of procaspase-8 at the DISC, Dr. Bettermann K., Otto von Guericke University Magdeburg Department of Translational Inflammation Research (Magdeburg), Germany
14:40-15:00  Virtual screening of chemical compounds regulating cell death, Ivanisenko N.V., Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
15:00-15:20  Automatic scientific literature mining in the field of cell death, Dr. Ivanisenko V.A., Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
15:20-15:40  Mosaic gene networks: modeling of interactions between biological processes, Popik O.V., Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
15:40-16:00  Coffee break
16:00-18:00  Practical workshops

24 June, Wednesday

09:00-10:00  «Analysis of functional importance of binding sites in the drosophila gap gene network model» Dr. Kozlov K.N.
10:00-11:00  «Old and new statistical biases for Illumina NGS technology» Dr. Abnizova I., Wellcome Trust Sanger Institute, UK
11:00-11:20  Coffee break
11:20-12:20  «Extracting biological insights from complex multiplexed datasets» Prof. Baranova A.V., George Mason University, USA
12:20-13:00  Lunch
13:00-14:00  Excursion: Geological museum
14:30-15:30  Practical workshops
15:30-16:00  Coffee break
16:00-17:00  Practical workshops
17:00-18:00  Preparation of presentation of practical workshops results

25 June, Thursday

09:00-10:00  «Mass spectrometric analysis of the proteome and its application in Systems Biology» Prof. Zakhartsev M., Hohenheim University, Institute of Plant Physiology and Biotechnology, Germany
10:00-11:00  «Metagenomics: high-throughput sequencing in the study of microbial communities» Kurilshikov А., Tsepilov Y. Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
11:00-11:20  Coffee break
11:20-15:30  Young scientists’ presentations
11:20-12:35  Bondar E.I. «ASSEMBLY AND ANNOTATION OF SIBERIAN LARCH CHLOROPLAST GENOME AND THE SEARCH FOR SINGLE NUCLEOTIDE POLYMORPHISMS»
12:35-12:50  Gubaev R.F. «THE ABSCISIC ACID EFFECT ON THE PECTOBACTERIUM ATROSEPTICUM TRANSCRIPTOME PROFILE»
12:50-13:05  Kulakova E.V. «COMPUTER ANALYSIS OF GENE LOCATION RELATIVE TO CHROMOSOME CONTACTS REVEALED BY ChIA-PET AND Hi-C»
13:05-13:20  Markov A.V. «EXPRESSION ANALYSIS OF SOLOXOLONE METHYL EFFECTS ON CANCER CELLS»
12:20-13:30  Lunch
13:30-13:45  Spitsina A.M. «GENE EXPRESSION DATA PROCESSING USING MICROARRAYS AND RNA-PROFILING IN LABORATORY ANIMALS»
13:45-14:00  Brzhozovsky A. «APPLYING BIOINFORMATICS METHODS FOR REVEALING MARKER PROTEINS SPECIFIC FOR ENDOTHELIAL DYSFUNCTION USING LC-MS/MS»
14:00-14:15  Annenkova N.V. «CASE OF PROTIST RECENT DIVERGENCE RESOLVED USING PHYLOGENOMIC APPROACH»
14:15-14:30  Kuzmitskaya P.V. «GENOME FRAGMENTS OF THREE APPLE VIRUSES ARE UNDER STRONG PURIFYING SELECTION»
14:30-14:45  Romanov D.E. «MSCANNER – A GENOME-WIDE MOTIF FINDING TOOL»
14:45-15:00  Chekantsev A.D. «A MODULE FOR INTEGRATING SBML-WRITTEN MATHEMATICAL MODELS INTO THE SOFTWARE PACKAGE «HAPLOID EVOLUTIONARY CONSTRUCTOR»
15:00-15:15  Kashkak E.S. «MICROBIAL DIVERSITY IN ZHOIGAN HOT SPRING (EASTERN SAYAN, RUSSIA)»
15:15-15:30  Kupova O. Yu. «RECONSTRUCTION OF THE GENETIC STRUCTURE OF THE PROPOSED ANCESTRAL POPULATION OF TURKIC AND SOUTH SIBERIAN POPULATIONS»
15:30-16.00  Coffee break
16:00-17:30  Presentation of practical workshops results
17:30-18:00  Closing of the School. Farewell

There will be following topics of practical training:

  •     Constructing stoichiometric models of metabolic networks
  •     Topological analysis of stoichiometric models of metabolic networks
  •     Metagenomics: high-throughput sequencing data analysis in the study of microbial communities
  •     Modeling of apoptosis cd95 signaling pathway
  •     Structural biology: drug design
  •     Search for homologous sequences by BLAST and phylogenetic tree reconstruction
  •     Molecular phylogeny and evolution
  •     Writing article in the field of bioinformatics and its promotion in good journals