August 26, Friday
Arrival of the participants to the hotel “Zolotaya Dolina”
12.00 – 18.00 Registration of the participants at the Institute of Cytology and Genetics
14.00 – 14.30 Opening ceremony in the Institute of Cytology and Genetics Conference hall.
Introduction: “High-performance computing in bioinformatics : Inter-institutional Shared Computing Facility Center “Bioinformatics”, Dr. Yury Orlov, Head of the Inter-institutional Shared Computing Facility Center “Bioinformatics”.
14.30 – 17.30 – Lecture session
14.30-16.10 “A probabilistic framework for predicting chromosomal order and orientation of DNA sequence scaffolds of a de novo assembled genome” Dr. Denis Larkin, Aberystwyth University, Aberystwyth, UK
16.10-16.30 Coffee-break
16.30-17.30 “Assembling and functional annotation of genome and transcriptome using next generation sequencing technology data“. Dr. Artem Kasianov, V.A. Engelhardt Institute of Molecular Biology RAS, Moscow, Russia
August 27, Saturday
Institute of Cytology and Genetics
9.30 – 13.00 Practical courses
Institute of Cytology and genetics computer schoolroom
9.30 – 11.30 “Analysis and visualization of NGS data in Unipro UGENE”. Unipro company, Novosibirsk, Russia.
11.30-11.50 Coffee break.
11.50 – 13.00 “Introduction to High-performance computing clusters”, Dr. Dmitry Afonnikov, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
13.00 – 14.30 Lunch break
14.30 – 18.00 Participants’s presentations session
20 min for presentation+5 min for questions/discussion
“Development of a model system to study gene interactions of parental forms in wheat-rye hybrids and primary triticale” N.D. Tikhenko; St. Petersburg branch of the N.I. Vavilov Institute of General Genetics, St. Petersburg, Russia
“Development of molecular markers for genes underlying salt stress resistance in Medicago L. Species” M.S. Vishnevskaya, A.V. Pavlov, E.A. Dzyubenko, N.I. Dzyubenko, E.K. Potokina; N.I. Vavilov Research Institute of Plant Industry, St. Petersburg, Russia
“HMM-based prediction of human miRNAs and the analysis of “young” miRNAs” P.S. Vorozheykin; Novosibirsk State University, Novosibirsk, Russia
“Development and optimization of the genome mapping algorithm” G.A. Grekhov; Information technology center UniPro, Novosibirsk, Russia
Poster Session
“Della-mutations in plants” G. A. Chebotar, S.V. Chebotar; South Plant Biotechnology Center NAAN Ukraine, Odesa, Ukraine
“Identification of leaf rust resistance genes in wild relativces, sinthetik forms and introgression lines of commmon wheat(Triticum aestivum L.)” E.R. Davoyan, R.O. Davoyan, Yu. S. Zubanova, I. V. Bebyakina., A.M. Kravchenko, A.N. Zinchenko; Krasnodar Research Institute of Agricultural by name P.P. Lukianenko, Krasnodar, Russia
“Polymorphism of the exon 11 of the Lr34 locus in ukrainian wheat cultivars” A.V. Karelov, Ya.V. Pirko, N.A. Kozub, I.A. Sozinov, Ya.B. Blume, A.A. Sozinov; Institute of Food Biotechnology and Genomics, Natl. Academy of Sciences of Ukraine, Kiev, Ukraine
“Bread wheat germplasm resistance to stem rust race Ug 99” M.A. Levshunov; Omsk State Agrarian University, Omsk, Russia
“Genetic network of NF1, NF2 and associated transcription factors” K. A. Golovnina; Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
“A new approach in breeding enlarging the range of variability of common wheat (Triticum aestivum L.)” K.Kh. Makhmudova, E.D. Bogdanova, S.S. Kirikovich, N.A. Vinichenko, E.V. Levites; Institute of Plant Biology and Biotechnology MES RK, Almaty, Kazakhstan
“Technological properties of grain and flour in bread wheat lines with introgressions from Aegilops speltoides and Aegilops markgrafii” M.F. Ermakova, A.K. Chistyakova, L.V. Shchukina, T.A. Pshenichnikova, E.V. Morozova, A.V. Simonov, A. Weidner, A. B?rner; Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
“Chromosomal location of the gene QS introgressed in bread wheat from Aegilops speltoides tausch, and it’s interaction with the gene Q from Triticum spelta L.” A.V. Simonov, T.A. Pshenichnikova; Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
August 28, Sunday
9.30 – 13.10 Lecture session
Institute of Cytology and Genetics Conference Hall
9.30 – 11.10 “SOLiD technology for high-throughput sequencing”, Dr. Gennady Vasiliev, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
11.10 – 11.30 Coffee break.
11.30 – 13.10 “Bioinformatics processing of the SOLiD sequence data”, Dr. Dmitry Afonnikov, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
13.10 – 14.00 Lunch break
14.00 – 18.30 Joint session with the plenary talks of the «Wheat genetic resources and genomics» at the House of Scientists
18.30 – 20.00 Welcome reception at the House of Scientists
August 29, Monday
9.30 – 13.10 Lecture session
Institute of Cytology and Genetics Conference Hall
9.30 – 11.10 “How proteins read sequence information from DNA?” Prof. Akinori Sarai, Kyushu Institute of Technology, Iizuka, Japan
11.10-11.30 Coffee break
11.30-13.10 “Protein-protein interactions: evolution, prediction and regulation” Dr. Anna Panchenko, NCBI, Bethesda, USA
13.10 – 14.30 Lunch break
14.30 – 18.00 Practical courses
Institute of Cytology and genetics computer schoolroom
“Using Bfast program to map SOLiD sequencing data to reference genome”, Dr. Dmitry Afonnikov, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
August 30, Tuesday
9.30 – 13.10 Lecture session with coffee break
Institute of Cytology and Genetics Conference Hall
9.30-11.10 “Computer analysis of high throughput sequencing with chromatin immunoprecipitation (ChIP-seq) in human and model organisms genomes”. Dr. Yury Orlov, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
11.10-11.30 Coffee break
11.30 – 13.10 “Exon-intron gene structure and ubiquity of alternative splicing”. Dr. Vladimir Babenko, Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia
13.10 Closing ceremony
20.00 Bus excursion to Novosibirsk