FUNCTIONAL RELATIONSHIP BETWEEN AMINO ACID RESIDUES AT N- AND C-TERMINI OF DNA-BINDING REGIONS OF TRANSCRIPTION FACTORS CREB AND AP-1 REVEALED BY ANALYZING THE PAIR CORRELATIONS OF AMINO ACID SUBSTITUTIONS. AFONNIKOV D., TITOV I.I.
STATISTICAL RELATION BETWEEN THE POSITIONS OF THE ALPHA-HELIX IN THE ZINC-FINGER DNA-BINDING DOMAIN: RESULTS FROM THE PHAGE DISPLAY DATA ANALYSIS. AFONNIKOV D., WINGENDER E.
THE PRACTICAL STUDY OF THE BEHAVIOR OF THE COMPLEX DYNAMIC SYSTEMS ON THE BASIS OF THE LIFE GAME FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. AFONNIKOV D., KOLESOV G.B., MININA A.V., MIKHAILOV Yu.I., IVASHIN S.A.
AKBEROVA N.
CONTEXT-FREE METHOD OF PATTERN RECOGNITION IN THE GENETIC TEXTS. AKBEROVA N., KOLPAKOV A., LEONTIEV A.
ALEXANDROV N.
ON THE NUMBER OF STRUCTURAL FAMILIES IN THE PROTEIN UNIVERSE. ALEXANDROV N., GO N.
ALIEV J.A.
SOME POSSIBLE ELEMENTS OF TRANSCRIPTION REGULATION OF RICE CHLOROPLAST ENCODED GENES. SHAHMURADOV I.A., MUSTAFAYEV N.Sh., ALIEV J.A.
ALVAREZ-BUYLLA ELENA
FLOWER MORPHOGENESIS IN ARABIDOPSIS THALIANA: A LOGICAL ANALYSIS. MENDOZA LUIS, ALVAREZ-BUYLLA ELENA, THIEFFRY DENIS
AMIKISHIEV V.G.
ANALYSIS OF FUNCTIONAL SITE MOTIFS OF MOBILE GENETIC ELEMENTS RELATIVE TO THEIR POSSIBLE MOLECULAR FUNCTIONS. AMIKISHIEV V.G., RATNER V.A.
ANANKO E.A.
EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION. STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
PROGRAMS FOR DATA INPUT TO THE TRANSCRIPTION REGULATORY REGIONS DATABASE. ANANKO E.A., NAUMOCHKIN A.N., FOKIN O.N., FROLOV A.S.
GENE NETWORKS: A DATABASE AND ITS AUTOMATED VISUALIZATION THROUGH THE INTERNET IN THE GENENET COMPUTING SYSTEM. ANANKO E.A., KOLPAKOV F.A., KOLESOV G.B., KOLCHANOV N.A.
ARKHIPOVA IRINA R.
SPECIFIC FEATURES OF X-LINKED PROMOTER SEQUENCES IN DROSOPHILA. ARKHIPOVA IRINA R.
A PROGRAM FOR CALCULATING GAPPED DINUCLEOTIDE CORRELATIONS IN NUCLEIC ACID SEQUENCES AND ITS APPLICATION TO REVEAL SPECIFIC SEQUENCE FEATURES OF X-LINKED PROMOTERS IN DROSOPHILA. ARKHIPOVA IRINA R., POKROVSKI SERGEI V.
ARRIGO P.
SELF-ORGANIZING NEURAL NETWORKS HIGHLIGHT POSSIBLE FUNCTIONALLY RELEVANT REGIONS IN THE C-DNA CODING SEQUENCES OF G-PROTEIN COUPLED RECEPTORS. CASADIO R., ARRIGO P., FARISELLI P.
ARSHINOVA T.V.
STRUCTURE-FUNCTIONAL HOMOLOGY OF THE PROKARYOTIC AND EUKARYOTIC RNA POLYMERASES. SAVINKOVA L.K., SOKOLENKO A.A., SEDOVA V.M., RAU V.A., TULOKHONOV I.I, KOBZEV V.F., ARSHINOVA T.V.
ARZIEV A.Sh.
THE LEUCINE MOTIF IN SUBUNITS 6 AND 9 OF PLANT MITOCHONDRIAL ATP SYNTHASE PROVIDING PRESUMABLY THE ASSEMBLY OF THE MEMBRANE PART OF THE ENZYME. KONSTANTINOV Yu.M., ARZIEV A.Sh., PODSOSONNY V.A.
ASTAKHOVA T.V.
SOME PROBLEMS OF GENE RECOGNITION IN PROTIST DNA. ASTAKHOVA T.V., GELFAND M.S., ROYTBERG M.A.
AULCHENKO Yu.S.
THE EFFICIENCY OF AN APPROXIMATION OF THE LIKELIHOOD BY CUTTING: DEPENDANCE ON A SIZE OF LOOPS IN A PEDIGREE. AULCHENKO Yu.S., AXENOVICH T.I.
AXENOVICH T.I.
THE EFFICIENCY OF AN APPROXIMATION OF THE LIKELIHOOD BY CUTTING: DEPENDANCE ON A SIZE OF LOOPS IN A PEDIGREE. AULCHENKO Yu.S., AXENOVICH T.I.
PROMOTERS: AT/GC CONTENT AND PROPERTIES OF TATA BOX. KOSAREV P., BABENKO V.N.
COMBINATORIAL IDENTIFICATION OF PROMOTERS INDUCED UPON IMMUNE CELL ACTIVATION. KEL A.E., KEL-MARGOULIS O.V., BABENKO V.N., WINGENDER E.
SEARCH FOR DEGENERATE OLIGONUCLEOTIDE MOTIFS IN TRANSCRIPTION FACTOR BINDING SITES AND EUKARYOTIC PROMOTERS (THE SYSTEM ARGO). VISHNEVSKY O.V., PODKOLODNAYA O.A., BABENKO V.N.
STRUCTURAL AND COMPOSITIONAL FEATURES OF 5’ UNTRANSLATED REGIONS OF HIGHER PLANT MRNAS. KOCHETOV A.V., PILUGIN M.V., KOLPAKOV F.A., BABENKO V.N., KVASHNINA E.V., SHUMNY V.K.
MGL: AN OBJECT-ORIENTED COMPUTER SYSTEM FOR MOLECULAR GENETIC DATA MANAGEMENT, ANALYSIS, AND VISUALIZATION. KOLPAKOV F.A., BABENKO V.N.
BAJIC I.V.
A NEW METHOD OF SPECTRAL ANALYSIS OF DNA/RNA AND PROTEIN SEQUENCES. BAJIC V.B., BAJIC I.V., HIDE W.
BAJIC V.B.
A NEW METHOD OF SPECTRAL ANALYSIS OF DNA/RNA AND PROTEIN SEQUENCES. BAJIC V.B., BAJIC I.V., HIDE W.
BALDI PIERRE
DNA STRUCTURE IN HUMAN RNA POLYMERASE II PROMOTERS. PEDERSEN ANDERS GORM, BALDI PIERRE, CHAUVIN YVES, BRUNAK SOREN
BANSAL A.K.
CONSERVED RNA STRUCTURES REGULATE INITIATION OF TRANLSATION OF ESCERICHIA COLI AND HAEMOPHILUS INFLUENZAE RIBOSOMAL PROTEIN OPERONS. VITRESCHAK A., BANSAL A.K., GELFAND M.S.
BATURIN V.
PROTEIN 3D ALIGNMENT SOFTWARE FOR INTEL COMPUTERS. VTYURIN N., BATURIN V., GULIN V., GORYACHEV N.
INTEGRATING OF KNOWLEDGE ON REGULATION OF MX1 PROTEIN INDUCTION AND ANTIVIRAL ACTION BY A MATHEMATICAL MODELING APPROACH. BAZHAN S.I., BELOVA O.E.
BENTOLILA SIMONE
MODELING SIGNAL PATHWAYS. BENTOLILA SIMONE
BEREZIKOV E.
TOWARDS UNDERSTANDING OF REGULATION OF NON-LTR RETROTRANSPOSONS: RTE-1 ELEMENT OF THE NEMATODE CAENORHABDITIS ELEGANS. BEREZIKOV E., BLINOV A., BERGTROM G.
BERGTROM G.
TOWARDS UNDERSTANDING OF REGULATION OF NON-LTR RETROTRANSPOSONS: RTE-1 ELEMENT OF THE NEMATODE CAENORHABDITIS ELEGANS. BEREZIKOV E., BLINOV A., BERGTROM G.
BERIKOV V.B.
REGRESSION ANALYSIS OF MUTATIONAL SPECTRA. ROGOZIN I.B., BERIKOV V.B.
BISHOP M.J.
CHARACTERIZATION OF THE COMPACT MODEL GENOME OF THE JAPANESE PUFFER FISH (FUGU RUBRIPES) USING A COSMID SEQUENCE SCANNING APPROACH. ELGAR G., CLARK M.S., EDWARDS Y.J.K., MEEK S., SMITH S., UMRANIA Y., WARNER S., WILLIAMS G., BISHOP M.J.
THEATRE: A NOVEL TOOL FOR THE COMPARATIVE INVESTIGATION AND DISPLAY OF EVOLUTIONARY DIVERSITY OF FUNCTIONAL AND STRUCTURAL FEATURES IN DNA SEQUENCES. EDWARDS Y.J.K., FRITH M., ELGAR G., BISHOP M.J.
BLINOV A.
TOWARDS UNDERSTANDING OF REGULATION OF NON-LTR RETROTRANSPOSONS: RTE-1 ELEMENT OF THE NEMATODE CAENORHABDITIS ELEGANS. BEREZIKOV E., BLINOV A., BERGTROM G.
INVARIANT SECONDARY STRUCTURE OF ALU REPEATS PREDETERMINES CLUSTERIZATION OF REGULATORY ELEMENTS IN HUMAN GENOME. BLINOV V.M., UVAROV D.L., RESENCHUK S.M., CHIRIKOVA G.B., KISSELEV L.L.
BOGACHEV S.
THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER. LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
BORK PEER
STRUCTURAL AND FUNCTIONAL ANNOTATION OF GENOMIC SEQUENCES:ASSIGNMENT OF FOLD FAMILY AND SORTING OF PROTEINS WITH RESPECT TO SUBCELLULAR LOCALIZATION. EISENHABER FRANK, BORK PEER, HUYNEN MARTIJN, ORENGO CHRISTINE, SCHULTZ JORG, SUNYAEV SHAMIL R., YUAN YANPING
BOURNE P.
LIKENESS: A SYSTEM SEARCHING FOR AND ALIGNING SIMILAR PROTEIN CONFORMATIONS. PONOMARENKO M.P., KOLCHANOV N.A., SHINDYALOV I., BOURNE P.
BRUNAK SOREN
DNA STRUCTURE IN HUMAN RNA POLYMERASE II PROMOTERS. PEDERSEN ANDERS GORM, BALDI PIERRE, CHAUVIN YVES, BRUNAK SOREN
BRUNK B.
EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION. STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
BUCHER PHILIPP
A MODULAR METAPROFILE-BASED SYSTEM FOR PREDICTION AND ANALYSIS OF EUKARYOTIC PROMOTERS. JUNIER THOMAS, KROGH ANDERS, BUCHER PHILIPP
BUGAENKO N.N.
MINIMUM ENTROPY PRINCIPLE AND CLASSIFICATION OF SYMBOLS FOR REVEALING STATISTICAL REGULARITIES IN A TEXT. BUGAENKO N.N., GORBAN A.N., SAPOZHNIKOV A.N.
MAXIMUM ENTROPY PRINCIPLE AND MEASUREMENT OF INFORMATION CONTENT OF GENETIC TEXT. BUGAENKO N.N., GORBAN A.N., SADOVSKY M.G.
BUGREEV D.V.
THE BASIC PRINCIPLES OF DNA RECOGNITION BY SEQUENCE DEPENDENT AND INDEPENDENT ENZYMES. NEVINSKY G.A., VINOGRADOVA N.L., BUGREEV D.V., ISHENKO A.A., VASYUTINA E.L., ULYANOVA N.P., ZAKHAROVA O.D., KOLOCHEVA T.A.
INTERPRETATION OF X-RAY ANALYSIS DATA OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE ENZYME. BUGREEV D.V., VASYUTINA E.L., BUNEVA V.N., NEVINSKY G.A.
BUNEVA V.N.
INTERPRETATION OF X-RAY ANALYSIS DATA OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE ENZYME. BUGREEV D.V., VASYUTINA E.L., BUNEVA V.N., NEVINSKY G.A.
LACTOFERRIN IS A NEW TRANSCRIPTIONAL FACTOR HAVING MANY DIFFERENT UNIQUE BIOLOGICAL FUNCTIONS. KANYSHKOVA T.G., SEMENOV D.V., BUNEVA V.N., NEVINSKY G.A.
C
CASADIO R.
SELF-ORGANIZING NEURAL NETWORKS HIGHLIGHT POSSIBLE FUNCTIONALLY RELEVANT REGIONS IN THE C-DNA CODING SEQUENCES OF G-PROTEIN COUPLED RECEPTORS. CASADIO R., ARRIGO P., FARISELLI P.
CHALEY M.B.
A PROBABLE MUTUAL RELATIONSHIP BETWEEN LATENT PERIODIC GENE STRUCTURE AND PERIODIC CONFORMATION OF THE PROTEIN. CHALEY M.B., KOROTKOV E.V.
CHAUME DENYS
IMGT ALGORITHM AND RULES FOR IMMUNOGLOBULIN AND T-CELL RECEPTOR MOTIF RECOGNITION. GIUDICELLI VERONIQUE, CHAUME DENYS, MENNESSIER GERARD, LEFRANC MARIE-PAULE
CHAUVIN YVES
DNA STRUCTURE IN HUMAN RNA POLYMERASE II PROMOTERS. PEDERSEN ANDERS GORM, BALDI PIERRE, CHAUVIN YVES, BRUNAK SOREN
CHEKMENEV D.S.
PRE-MRNA SPLICING IN EUKARYOTES — INTRON STRUCTURE, INTRON DETECTION, ALGORITHMS AND DATA STRUCTURES. CHEKMENEV D.S.
CHEREPANOVA E.Yu.
GENETIC LEVEL OF BIOPROCESSES REGULATION AND BIOSYSTEMS IN EXTREME CONDITIONS. NEFEDOV V.P., CHEREPANOVA E.Yu.
CHIKISHEVA T.A.
RECONSTRUCTION OF THE GENOFOND PECULIARITIES OF THE ANCIENT PAZYRYK POPULATION (I-II MILLENIUM BC) FROM GORNY ALTAI ACCORDING TO THE MTDNA STRUCTURE. VOEVODA M.I., SITNIKOVA V.V., ROMASHCHENKO A.G., CHIKISHEVA T.A., POLOS’MAK N.V., MOLODIN V.I.
INVARIANT SECONDARY STRUCTURE OF ALU REPEATS PREDETERMINES CLUSTERIZATION OF REGULATORY ELEMENTS IN HUMAN GENOME. BLINOV V.M., UVAROV D.L., RESENCHUK S.M., CHIRIKOVA G.B., KISSELEV L.L.
CLARK M.S.
CHARACTERIZATION OF THE COMPACT MODEL GENOME OF THE JAPANESE PUFFER FISH (FUGU RUBRIPES) USING A COSMID SEQUENCE SCANNING APPROACH. ELGAR G., CLARK M.S., EDWARDS Y.J.K., MEEK S., SMITH S., UMRANIA Y., WARNER S., WILLIAMS G., BISHOP M.J.
CLYDE A. HUTCHISON
A VIRTUAL CELL WITH 127 GENES. TOMITA MASARU, KENTA HASHIMOTO, KOUICHI TAKAHASHI, TOM SHIMIZU, YURI MATSUZAKI, FUMIHIKO MIYOSHI, KANAKO SAITO, SAKURA TANIDA, KATSUYUKI YUGI, J. CRAIG VENTER, CLYDE A. HUTCHISON
COLLADO-VIDES J.
ANALYSIS OF TRANSCRIPTIONAL FACTORS IN E. COLI. PEREZ-RUEDA E., VAN HELDEN J., WODAK S., COLLADO-VIDES J.
D
DAPHNA STRAUSS
EXTRACTING KOZAK CONSENSUS SEQUENCE USING KLEISLI. JING CHEN, NAM-HAI CHUA, DAPHNA STRAUSS, LIMSOON WONG
DZHELYADIN T.R.
MOLECULAR MECHANISMS OF PROMOTER-POLYMERASE RECOGNITION. ELECTROSTATIC INTERACTIONS IN PROMOTERS RECOGNIZED BY E.COLI Esigma70. KAMZOLOVA S.G., DZHELYADIN T.R., SOROKIN A.A., IVANOVA N.N., KUTUZOVA G.I., ESIPOVA N.G., POLOZOV R.V.
D’ANGELO D.
WEBGENE: INTERACTIVE TOOLS FOR PREDICTION AND ANALYSIS OF PROTEIN-CODING GENES STRUCTURE IN INTERNET. MILANESI L., ROGOZIN I.B., D’ANGELO D.
E
EDWARDS Y.J.K.
CHARACTERIZATION OF THE COMPACT MODEL GENOME OF THE JAPANESE PUFFER FISH (FUGU RUBRIPES) USING A COSMID SEQUENCE SCANNING APPROACH. ELGAR G., CLARK M.S., EDWARDS Y.J.K., MEEK S., SMITH S., UMRANIA Y., WARNER S., WILLIAMS G., BISHOP M.J.
THEATRE: A NOVEL TOOL FOR THE COMPARATIVE INVESTIGATION AND DISPLAY OF EVOLUTIONARY DIVERSITY OF FUNCTIONAL AND STRUCTURAL FEATURES IN DNA SEQUENCES. EDWARDS Y.J.K., FRITH M., ELGAR G., BISHOP M.J.
EISENHABER BIRGIT
THE SEQUENCE PATTERN FOR THE GLYCOSYLPHOSPHATIDYL-ANCHOR POSTTRANSLATIONAL MODIFICATION AND ITS RECOGNITION IN PROPROTEIN SEQUENCES. EISENHABER BIRGIT
EISENHABER FRANK
STRUCTURAL AND FUNCTIONAL ANNOTATION OF GENOMIC SEQUENCES:ASSIGNMENT OF FOLD FAMILY AND SORTING OF PROTEINS WITH RESPECT TO SUBCELLULAR LOCALIZATION. EISENHABER FRANK, BORK PEER, HUYNEN MARTIJN, ORENGO CHRISTINE, SCHULTZ JORG, SUNYAEV SHAMIL R., YUAN YANPING
ELGAR G.
CHARACTERIZATION OF THE COMPACT MODEL GENOME OF THE JAPANESE PUFFER FISH (FUGU RUBRIPES) USING A COSMID SEQUENCE SCANNING APPROACH. ELGAR G., CLARK M.S., EDWARDS Y.J.K., MEEK S., SMITH S., UMRANIA Y., WARNER S., WILLIAMS G., BISHOP M.J.
THEATRE: A NOVEL TOOL FOR THE COMPARATIVE INVESTIGATION AND DISPLAY OF EVOLUTIONARY DIVERSITY OF FUNCTIONAL AND STRUCTURAL FEATURES IN DNA SEQUENCES. EDWARDS Y.J.K., FRITH M., ELGAR G., BISHOP M.J.
ELISAPHENKO E.A.
THREE SUBFAMILIES OF SHORT INTERSPERSED ELEMENTS OF THE DOG GENOME: POSSIBLE ORIGIN AND FUNCTIONS. KOLESNIKOV N.N., ROGOZIN I.B., LAVRENTIEVA M.V., ELISAPHENKO E.A.
ESIPOVA N.G.
MOLECULAR MECHANISMS OF PROMOTER-POLYMERASE RECOGNITION. ELECTROSTATIC INTERACTIONS IN PROMOTERS RECOGNIZED BY E.COLI Esigma70. KAMZOLOVA S.G., DZHELYADIN T.R., SOROKIN A.A., IVANOVA N.N., KUTUZOVA G.I., ESIPOVA N.G., POLOZOV R.V.
F
FALSHINA I.V.
THE SEQUENCING AND MOLECULAR ANALYSIS OF COXI GENE FRAGMENTS OF WILD PERENNIAL CROP ELYMUS SIBIRICUS L.. FALSHINA I.V., VERBITSKII D.S., ROGOZIN I.B., KONSTANTINOV Yu.M., TAUSON E.L.
FARISELLI P.
SELF-ORGANIZING NEURAL NETWORKS HIGHLIGHT POSSIBLE FUNCTIONALLY RELEVANT REGIONS IN THE C-DNA CODING SEQUENCES OF G-PROTEIN COUPLED RECEPTORS. CASADIO R., ARRIGO P., FARISELLI P.
FISHER P.
THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER. LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
FOKIN O.N.
PROGRAMS FOR DATA INPUT TO THE TRANSCRIPTION REGULATORY REGIONS DATABASE. ANANKO E.A., NAUMOCHKIN A.N., FOKIN O.N., FROLOV A.S.
FREIER A.
MOLECULAR DATABASE INTEGRATION: ANALYSIS OF METABOLIC NETWORK CONTROL. FREIER A., HODING M., HOFESTADT R., LANGE M, SCHOLZ U.
FRISCH M.
COMPEL: A DATABASE ON COMPOSITE REGULATORY ELEMENTS. KEL-MARGOULIS O.V., KEL A.E., FRISCH M., ROMASHCHENKO A.G., KOLCHANOV N.A., WINGENDER E.
FRITH M.
THEATRE: A NOVEL TOOL FOR THE COMPARATIVE INVESTIGATION AND DISPLAY OF EVOLUTIONARY DIVERSITY OF FUNCTIONAL AND STRUCTURAL FEATURES IN DNA SEQUENCES. EDWARDS Y.J.K., FRITH M., ELGAR G., BISHOP M.J.
FROLOV A.S.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
PROGRAMS FOR DATA INPUT TO THE TRANSCRIPTION REGULATORY REGIONS DATABASE. ANANKO E.A., NAUMOCHKIN A.N., FOKIN O.N., FROLOV A.S.
ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES. PONOMARENKO J.V., FURMAN D.P., MISHCHENKO T.M., KATOKHINA L.V., VALUEV V.P., PEREGOEDOVA E.L., FROLOV A.S., PODKOLODNY N.L., PONOMARENKO M.P.
B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., VOROBIEV D.G., LEVITSKY V.G., PODKOLODNAYA O.A., OVERTON G.C., KOLCHANOV N.A.
A SYSTEM FOR ACTIVATION OF THE TRRD DATABASE: FURTHER DEVELOPMENT OF GENEEXPRESS. FROLOV A.S., LAVRYUSHEV S.V., VOROBIEV D.G., GRIGOROVICH D.A.
RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., PODKOLODNAYA O.A., VOROBIEV D.G., KOLCHANOV N.A., OVERTON G.C.
REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES. PONOMARENKO M.P., KOLCHANOV N.A., PONOMARENKO J.V., FROLOV A.S., PODKOLODNAYA O.A., VOROBIEV D.G., PODKOLODNY N.L., OVERTON G.C.
EUKARYOTIC MRNAS ENCODING ABUNDANT AND SCARCE PROTEINS ARE DISSIMILAR IN MANY STRUCTURAL FEATURES OF 5’-UNTRANSLATED LEADERS. KOCHETOV A.V., PONOMARENKO M.P., VOROBIEV D.G., FROLOV A.S., KISSELEV L.L., KOLCHANOV N.A.
MGL-PROT: THE ANTHOLOGY-BASED QUERY LANGUAGE FOR THE USER SEARCH FOR THE 3D STRUCTURES AND FUNCTIONS OF PROTEINS IN THE WWW-AVAILABLE DATABASES. KOLPAKOV F.A., FROLOV A.S., PONOMARENKO M.P., PODKOLODNY N.L.
ANTIGENIC MIMICRY OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 AS A RESULT OF STRUCTURAL SIMILARITY OF PROTEIN GP120 AND HUMAN APOLIPOPROTEIN A-1. LUKASHEV V.A., FROLOV A.S., PANIN L.E., GIMAUTDINOVA O.I.
BUSINESS GAME EQUILIBRIUM FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. PONOMARENKO M.P., ISHCHENKO I.V., FROLOV A.S., MININA A.V., KONEVA E.I., MIKHAILOV Yu.I., IVASHIN S.A.
BUSINESS GAME HUMAN GENOME FOR EDUCATION IN BUSINESS, LAW AND COMMERCE. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., MININA A.V., IVASHIN S.A., MIKHAILOV Yu.I.
FUMIHIKO MIYOSHI
A VIRTUAL CELL WITH 127 GENES. TOMITA MASARU, KENTA HASHIMOTO, KOUICHI TAKAHASHI, TOM SHIMIZU, YURI MATSUZAKI, FUMIHIKO MIYOSHI, KANAKO SAITO, SAKURA TANIDA, KATSUYUKI YUGI, J. CRAIG VENTER, CLYDE A. HUTCHISON
FURMAN D.P.
ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES. PONOMARENKO J.V., FURMAN D.P., MISHCHENKO T.M., KATOKHINA L.V., VALUEV V.P., PEREGOEDOVA E.L., FROLOV A.S., PODKOLODNY N.L., PONOMARENKO M.P.
G
GELFAND M.S.
COMPUTER ANALYSIS OF TRANSCRIPTION REGULATORY PATTERNS IN COMPLETELY SEQUENCED BACTERIAL GENOMES. GELFAND M.S., MIRONOV A.A.
CONSERVED RNA STRUCTURES REGULATE INITIATION OF TRANLSATION OF ESCERICHIA COLI AND HAEMOPHILUS INFLUENZAE RIBOSOMAL PROTEIN OPERONS. VITRESCHAK A., BANSAL A.K., GELFAND M.S.
SOME PROBLEMS OF GENE RECOGNITION IN PROTIST DNA. ASTAKHOVA T.V., GELFAND M.S., ROYTBERG M.A.
GENE RECOGNITION USING EST DATA: UNEXPECTEDLY FREQUENT ALTERNATIVE SPLICING OF HUMAN GENES. MIRONOV A.A., GELFAND M.S.
SEGMENTATION OF YEAST DNA USING HIDDEN MARKOV MODELS. PESHKIN L., GELFAND M.S.
GEORGE L. GABOR MIKLOS
FROM GENOMICS TO EPIGENOMICS: DATA TRANSFERABILITY ACROSS THE EVOLUTIONARY SPECTRUM. GEORGE L. GABOR MIKLOS
GIMAUTDINOVA O.I.
DISTURBANCES OF GENOM REGULATION AS THE CONSEQUENCE OF THE STRUCTURAL LIKENESS OF HIV-1 ENV PROTEINS AND HUMAN APOLIPOPROTEIN A-I. PANIN L.E., LUKASHEV V.A., GIMAUTDINOVA O.I.
ANTIGENIC MIMICRY OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 AS A RESULT OF STRUCTURAL SIMILARITY OF PROTEIN GP120 AND HUMAN APOLIPOPROTEIN A-1. LUKASHEV V.A., FROLOV A.S., PANIN L.E., GIMAUTDINOVA O.I.
GIUDICELLI VERONIQUE
IMGT ALGORITHM AND RULES FOR IMMUNOGLOBULIN AND T-CELL RECEPTOR MOTIF RECOGNITION. GIUDICELLI VERONIQUE, CHAUME DENYS, MENNESSIER GERARD, LEFRANC MARIE-PAULE
GLAZKO G.V.
IN SILICO IDENTIFICATION OF MARS/SARS IN DNA SEQUENCES. GLAZKO G.V., ROGOZIN I.B., GLAZKOV M.V.
GLAZKOV M.V.
IN SILICO IDENTIFICATION OF MARS/SARS IN DNA SEQUENCES. GLAZKO G.V., ROGOZIN I.B., GLAZKOV M.V.
GO N.
ON THE NUMBER OF STRUCTURAL FAMILIES IN THE PROTEIN UNIVERSE. ALEXANDROV N., GO N.
GORBAN A.N.
MINIMUM ENTROPY PRINCIPLE AND CLASSIFICATION OF SYMBOLS FOR REVEALING STATISTICAL REGULARITIES IN A TEXT. BUGAENKO N.N., GORBAN A.N., SAPOZHNIKOV A.N.
MAXIMUM ENTROPY PRINCIPLE AND MEASUREMENT OF INFORMATION CONTENT OF GENETIC TEXT. BUGAENKO N.N., GORBAN A.N., SADOVSKY M.G.
AUTHOMATIC CLASSIFICATION OF NUCLEOTIDE SEQUENCES AND ITS RELATION TO NATURAL TAXONOMY AND PROTEIN FUNCTION. GORBAN A.N., POPOVA T.G., SADOVSKY M.G.
GORE M.M.
USE OF BIOINFORMATICS IN DEVELOPMENT OF PEPTIDE VACCINE. KOLASKAR A.S., URMILA KULKARNI-KALE, GORE M.M.
GORYACHEV N.
PROTEIN 3D ALIGNMENT SOFTWARE FOR INTEL COMPUTERS. VTYURIN N., BATURIN V., GULIN V., GORYACHEV N.
GORYACHKOVSKY T.N.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
A SYSTEM FOR ACTIVATION OF THE TRRD DATABASE: FURTHER DEVELOPMENT OF GENEEXPRESS. FROLOV A.S., LAVRYUSHEV S.V., VOROBIEV D.G., GRIGOROVICH D.A.
GRUZDEV A.D.
SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THE DNA TOPOISOMERASE I SITES. PONOMARENKO M.P., VOROBIEV D.G., PONOMARENKO J.V., KUZIN F.E., GRUZDEV A.D., KOLCHANOV N.A.
GULIN V.
PROTEIN 3D ALIGNMENT SOFTWARE FOR INTEL COMPUTERS. VTYURIN N., BATURIN V., GULIN V., GORYACHEV N.
H
HAAS J.
EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION. STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
IDENTIFYING DNA AND PROTEIN PATTERNS WITH STATISTICALLY SIGNIFICANT ALIGNMENT MATRICES. HERTZ GERALD Z., STORMO GARY D.
HIDE W.
A NEW METHOD OF SPECTRAL ANALYSIS OF DNA/RNA AND PROTEIN SEQUENCES. BAJIC V.B., BAJIC I.V., HIDE W.
HODING M.
MOLECULAR DATABASE INTEGRATION: ANALYSIS OF METABOLIC NETWORK CONTROL. FREIER A., HODING M., HOFESTADT R., LANGE M, SCHOLZ U.
HOFESTADT R.
MOLECULAR DATABASE INTEGRATION: ANALYSIS OF METABOLIC NETWORK CONTROL. FREIER A., HODING M., HOFESTADT R., LANGE M, SCHOLZ U.
HUYNEN MARTIJN
STRUCTURAL AND FUNCTIONAL ANNOTATION OF GENOMIC SEQUENCES:ASSIGNMENT OF FOLD FAMILY AND SORTING OF PROTEINS WITH RESPECT TO SUBCELLULAR LOCALIZATION. EISENHABER FRANK, BORK PEER, HUYNEN MARTIJN, ORENGO CHRISTINE, SCHULTZ JORG, SUNYAEV SHAMIL R., YUAN YANPING
I
IGARASHI TAKAKO
A THREE-LAYER MODEL FOR DESCRIBING DEVELOPMENT OF C.ELEGANS. TSUGUCHIKA KAMINUMA, IGARASHI TAKAKO, NAKANO TATSUYA, SASAKI SHINYA, MIWA JOHJI
IGNATIEVA E.V.
EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION. STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
THE LIPID METABOLISM TRANSCRIPTION REGULATORY REGIONS DATABASE (LM-TRRD): TRANSCRIPTION REGULATION OF LIPID METABOLISM GENES. IGNATIEVA E.V.
BUSINESS GAME EQUILIBRIUM FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. PONOMARENKO M.P., ISHCHENKO I.V., FROLOV A.S., MININA A.V., KONEVA E.I., MIKHAILOV Yu.I., IVASHIN S.A.
ISHENKO A.A.
THE BASIC PRINCIPLES OF DNA RECOGNITION BY SEQUENCE DEPENDENT AND INDEPENDENT ENZYMES. NEVINSKY G.A., VINOGRADOVA N.L., BUGREEV D.V., ISHENKO A.A., VASYUTINA E.L., ULYANOVA N.P., ZAKHAROVA O.D., KOLOCHEVA T.A.
IVANISENKO V.A.
PREDICTING RNA FOLDING BY GENETIC ALGORITHM WITH LOCAL EXHAUSTION. TITOV I.I., IVANISENKO V.A., KOLCHANOV N.A.
IVANOVA N.N.
MOLECULAR MECHANISMS OF PROMOTER-POLYMERASE RECOGNITION. ELECTROSTATIC INTERACTIONS IN PROMOTERS RECOGNIZED BY E.COLI Esigma70. KAMZOLOVA S.G., DZHELYADIN T.R., SOROKIN A.A., IVANOVA N.N., KUTUZOVA G.I., ESIPOVA N.G., POLOZOV R.V.
BUSINESS GAME EQUILIBRIUM FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. PONOMARENKO M.P., ISHCHENKO I.V., FROLOV A.S., MININA A.V., KONEVA E.I., MIKHAILOV Yu.I., IVASHIN S.A.
THE PRACTICAL STUDY OF THE BEHAVIOR OF THE COMPLEX DYNAMIC SYSTEMS ON THE BASIS OF THE LIFE GAME FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. AFONNIKOV D., KOLESOV G.B., MININA A.V., MIKHAILOV Yu.I., IVASHIN S.A.
BUSINESS GAME HUMAN GENOME FOR EDUCATION IN BUSINESS, LAW AND COMMERCE. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., MININA A.V., IVASHIN S.A., MIKHAILOV Yu.I.
J
J. CRAIG VENTER
A VIRTUAL CELL WITH 127 GENES. TOMITA MASARU, KENTA HASHIMOTO, KOUICHI TAKAHASHI, TOM SHIMIZU, YURI MATSUZAKI, FUMIHIKO MIYOSHI, KANAKO SAITO, SAKURA TANIDA, KATSUYUKI YUGI, J. CRAIG VENTER, CLYDE A. HUTCHISON
JAKT L.M.
LARGE SCALE SCREENING FOR TRANSCRIPTION REGULATORY SEQUENCES RECOGNISED BY HOX HOMEODOMAIN PROTEINS. JAKT L.M., SHAM M.H.
JIAN ZHU
A PROMOTER DATABASE OF YEAST SACCHAROMYCES CEREVISIAE (SCPD). JIAN ZHU, ZHANG MICHAEL Q.
JING CHEN
EXTRACTING KOZAK CONSENSUS SEQUENCE USING KLEISLI. JING CHEN, NAM-HAI CHUA, DAPHNA STRAUSS, LIMSOON WONG
JUNIER THOMAS
A MODULAR METAPROFILE-BASED SYSTEM FOR PREDICTION AND ANALYSIS OF EUKARYOTIC PROMOTERS. JUNIER THOMAS, KROGH ANDERS, BUCHER PHILIPP
K
KALEDIN V.I.
THE GLUCOCORTICOID-CONTROLLED GENE REGULATORY REGIONS DATABASE (GR-TRRD): THE USING FOR THE ELUCIDATION OF THE MECHANISMS OF CHEMICAL HEPATOCARCINOGENS ACTION. MERKULOVA T.I., MERKLOV V.M., KROPATCHEV K.Y., KALEDIN V.I.
KAMZOLOVA S.G.
MOLECULAR MECHANISMS OF PROMOTER-POLYMERASE RECOGNITION. ELECTROSTATIC INTERACTIONS IN PROMOTERS RECOGNIZED BY E.COLI Esigma70. KAMZOLOVA S.G., DZHELYADIN T.R., SOROKIN A.A., IVANOVA N.N., KUTUZOVA G.I., ESIPOVA N.G., POLOZOV R.V.
KANAKO SAITO
A VIRTUAL CELL WITH 127 GENES. TOMITA MASARU, KENTA HASHIMOTO, KOUICHI TAKAHASHI, TOM SHIMIZU, YURI MATSUZAKI, FUMIHIKO MIYOSHI, KANAKO SAITO, SAKURA TANIDA, KATSUYUKI YUGI, J. CRAIG VENTER, CLYDE A. HUTCHISON
KANYSHKOVA T.G.
LACTOFERRIN IS A NEW TRANSCRIPTIONAL FACTOR HAVING MANY DIFFERENT UNIQUE BIOLOGICAL FUNCTIONS. KANYSHKOVA T.G., SEMENOV D.V., BUNEVA V.N., NEVINSKY G.A.
EUKARYOTIC MRNAS ENCODING ABUNDANT AND SCARCE PROTEINS ARE DISSIMILAR IN MANY STRUCTURAL FEATURES OF 5’-UNTRANSLATED LEADERS. KOCHETOV A.V., PONOMARENKO M.P., VOROBIEV D.G., FROLOV A.S., KISSELEV L.L., KOLCHANOV N.A.
INVARIANT SECONDARY STRUCTURE OF ALU REPEATS PREDETERMINES CLUSTERIZATION OF REGULATORY ELEMENTS IN HUMAN GENOME. BLINOV V.M., UVAROV D.L., RESENCHUK S.M., CHIRIKOVA G.B., KISSELEV L.L.
KOBZEV V.F.
QUANTITATIVE COMPUTER-ASSISTED ANALYSIS OF THE TATA-BINDING PROTEIN AFFINITY FOR COMPLEMENTARY DUPLEXES OF SYNTHETIC OLIGODEOXYRIBONUCLEOTIDES. SAVINKOVA L.K., SOKOLENKO A.A., RAU V.A., KOBZEV V.F., PONOMARENKO M.P., PONOMARENKO J.V., KOLCHANOV N.A.
STRUCTURE-FUNCTIONAL HOMOLOGY OF THE PROKARYOTIC AND EUKARYOTIC RNA POLYMERASES. SAVINKOVA L.K., SOKOLENKO A.A., SEDOVA V.M., RAU V.A., TULOKHONOV I.I, KOBZEV V.F., ARSHINOVA T.V.
STRUCTURAL AND COMPOSITIONAL FEATURES OF 5’ UNTRANSLATED REGIONS OF HIGHER PLANT MRNAS. KOCHETOV A.V., PILUGIN M.V., KOLPAKOV F.A., BABENKO V.N., KVASHNINA E.V., SHUMNY V.K.
EUKARYOTIC MRNAS ENCODING ABUNDANT AND SCARCE PROTEINS ARE DISSIMILAR IN MANY STRUCTURAL FEATURES OF 5’-UNTRANSLATED LEADERS. KOCHETOV A.V., PONOMARENKO M.P., VOROBIEV D.G., FROLOV A.S., KISSELEV L.L., KOLCHANOV N.A.
KOKOZA E.
THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER. LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
KOLASKAR A.S.
USE OF BIOINFORMATICS IN DEVELOPMENT OF PEPTIDE VACCINE. KOLASKAR A.S., URMILA KULKARNI-KALE, GORE M.M.
KOLCHANOV N.A.
EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION. STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
COMPEL: A DATABASE ON COMPOSITE REGULATORY ELEMENTS. KEL-MARGOULIS O.V., KEL A.E., FRISCH M., ROMASHCHENKO A.G., KOLCHANOV N.A., WINGENDER E.
B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., VOROBIEV D.G., LEVITSKY V.G., PODKOLODNAYA O.A., OVERTON G.C., KOLCHANOV N.A.
GENE NETWORKS: A DATABASE AND ITS AUTOMATED VISUALIZATION THROUGH THE INTERNET IN THE GENENET COMPUTING SYSTEM. ANANKO E.A., KOLPAKOV F.A., KOLESOV G.B., KOLCHANOV N.A.
RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., PODKOLODNAYA O.A., VOROBIEV D.G., KOLCHANOV N.A., OVERTON G.C.
QUANTITATIVE COMPUTER-ASSISTED ANALYSIS OF THE TATA-BINDING PROTEIN AFFINITY FOR COMPLEMENTARY DUPLEXES OF SYNTHETIC OLIGODEOXYRIBONUCLEOTIDES. SAVINKOVA L.K., SOKOLENKO A.A., RAU V.A., KOBZEV V.F., PONOMARENKO M.P., PONOMARENKO J.V., KOLCHANOV N.A.
REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES. PONOMARENKO M.P., KOLCHANOV N.A., PONOMARENKO J.V., FROLOV A.S., PODKOLODNAYA O.A., VOROBIEV D.G., PODKOLODNY N.L., OVERTON G.C.
EUKARYOTIC MRNAS ENCODING ABUNDANT AND SCARCE PROTEINS ARE DISSIMILAR IN MANY STRUCTURAL FEATURES OF 5’-UNTRANSLATED LEADERS. KOCHETOV A.V., PONOMARENKO M.P., VOROBIEV D.G., FROLOV A.S., KISSELEV L.L., KOLCHANOV N.A.
THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER. LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
PREDICTING RNA FOLDING BY GENETIC ALGORITHM WITH LOCAL EXHAUSTION. TITOV I.I., IVANISENKO V.A., KOLCHANOV N.A.
LIKENESS: A SYSTEM SEARCHING FOR AND ALIGNING SIMILAR PROTEIN CONFORMATIONS. PONOMARENKO M.P., KOLCHANOV N.A., SHINDYALOV I., BOURNE P.
NEW METHOD FOR THE STUDY OF THE MODULAR STRUCTURE OF TRANSCRIPTION REGULATORY REGIONS. KOLESOV G.B., KOLPAKOV F.A., KOLCHANOV N.A.
SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THE DNA TOPOISOMERASE I SITES. PONOMARENKO M.P., VOROBIEV D.G., PONOMARENKO J.V., KUZIN F.E., GRUZDEV A.D., KOLCHANOV N.A.
KOLESNIKOV N.N.
THREE SUBFAMILIES OF SHORT INTERSPERSED ELEMENTS OF THE DOG GENOME: POSSIBLE ORIGIN AND FUNCTIONS. KOLESNIKOV N.N., ROGOZIN I.B., LAVRENTIEVA M.V., ELISAPHENKO E.A.
GENE NETWORKS: A DATABASE AND ITS AUTOMATED VISUALIZATION THROUGH THE INTERNET IN THE GENENET COMPUTING SYSTEM. ANANKO E.A., KOLPAKOV F.A., KOLESOV G.B., KOLCHANOV N.A.
THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER. LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
THE PRACTICAL STUDY OF THE BEHAVIOR OF THE COMPLEX DYNAMIC SYSTEMS ON THE BASIS OF THE LIFE GAME FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. AFONNIKOV D., KOLESOV G.B., MININA A.V., MIKHAILOV Yu.I., IVASHIN S.A.
NEW METHOD FOR THE STUDY OF THE MODULAR STRUCTURE OF TRANSCRIPTION REGULATORY REGIONS. KOLESOV G.B., KOLPAKOV F.A., KOLCHANOV N.A.
KOLOCHEVA T.A.
THE BASIC PRINCIPLES OF DNA RECOGNITION BY SEQUENCE DEPENDENT AND INDEPENDENT ENZYMES. NEVINSKY G.A., VINOGRADOVA N.L., BUGREEV D.V., ISHENKO A.A., VASYUTINA E.L., ULYANOVA N.P., ZAKHAROVA O.D., KOLOCHEVA T.A.
KOLPAKOV A.
CONTEXT-FREE METHOD OF PATTERN RECOGNITION IN THE GENETIC TEXTS. AKBEROVA N., KOLPAKOV A., LEONTIEV A.
KOLPAKOV F.A.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
GENE NETWORKS: A DATABASE AND ITS AUTOMATED VISUALIZATION THROUGH THE INTERNET IN THE GENENET COMPUTING SYSTEM. ANANKO E.A., KOLPAKOV F.A., KOLESOV G.B., KOLCHANOV N.A.
STRUCTURAL AND COMPOSITIONAL FEATURES OF 5’ UNTRANSLATED REGIONS OF HIGHER PLANT MRNAS. KOCHETOV A.V., PILUGIN M.V., KOLPAKOV F.A., BABENKO V.N., KVASHNINA E.V., SHUMNY V.K.
MGL-PROT: THE ANTHOLOGY-BASED QUERY LANGUAGE FOR THE USER SEARCH FOR THE 3D STRUCTURES AND FUNCTIONS OF PROTEINS IN THE WWW-AVAILABLE DATABASES. KOLPAKOV F.A., FROLOV A.S., PONOMARENKO M.P., PODKOLODNY N.L.
RAPID ESTIMATES OF STATISTICAL SIGNIFICANCE OF THE PAIRWISE NUCLEOTIDE SEQUENCE ALIGNMENT. SELEDTSOV I.A., KOLPAKOV F.A.
NEW METHOD FOR THE STUDY OF THE MODULAR STRUCTURE OF TRANSCRIPTION REGULATORY REGIONS. KOLESOV G.B., KOLPAKOV F.A., KOLCHANOV N.A.
MGL: AN OBJECT-ORIENTED COMPUTER SYSTEM FOR MOLECULAR GENETIC DATA MANAGEMENT, ANALYSIS, AND VISUALIZATION. KOLPAKOV F.A., BABENKO V.N.
RECOGNITION OF THE SUBSET OF EUKARYOTIC PROMOTERS. KONDRAKHIN Y.V., OVERTON G.C.
KONEVA E.I.
BUSINESS GAME EQUILIBRIUM FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. PONOMARENKO M.P., ISHCHENKO I.V., FROLOV A.S., MININA A.V., KONEVA E.I., MIKHAILOV Yu.I., IVASHIN S.A.
KONSTANTINOV Yu.M.
THE LEUCINE MOTIF IN SUBUNITS 6 AND 9 OF PLANT MITOCHONDRIAL ATP SYNTHASE PROVIDING PRESUMABLY THE ASSEMBLY OF THE MEMBRANE PART OF THE ENZYME. KONSTANTINOV Yu.M., ARZIEV A.Sh., PODSOSONNY V.A.
THE SEQUENCING AND MOLECULAR ANALYSIS OF COXI GENE FRAGMENTS OF WILD PERENNIAL CROP ELYMUS SIBIRICUS L.. FALSHINA I.V., VERBITSKII D.S., ROGOZIN I.B., KONSTANTINOV Yu.M., TAUSON E.L.
KOONIN E.V.
A NATURAL TAXONOMY OF GENE FAMILIES FROM COMPLETE GENOMES. TATUSOV R.L., KOONIN E.V., LIPMAN D.J.
KOROTKOV E.V.
TRIPLET PERIODICITY OF THE DNA CODING AND NONCODING REGIONS. RUDENKO V.M., KOROTKOV E.V.
A PROBABLE MUTUAL RELATIONSHIP BETWEEN LATENT PERIODIC GENE STRUCTURE AND PERIODIC CONFORMATION OF THE PROTEIN. CHALEY M.B., KOROTKOV E.V.
LATENT PERIODICITY OF PROTEIN SEQUENCES. KOROTKOV E.V., KOROTKOVA M.A.
KOROTKOVA M.A.
LATENT PERIODICITY OF PROTEIN SEQUENCES. KOROTKOV E.V., KOROTKOVA M.A.
KOSAREV P.
PROMOTERS: AT/GC CONTENT AND PROPERTIES OF TATA BOX. KOSAREV P., BABENKO V.N.
KOTOKO NAKATA
DEVELOPMENT OF A RECEPTOR DATABASE. KOTOKO NAKATA, TAKAKO TAKAI, TSUGUCHIKA KAMINUMA
KOUICHI TAKAHASHI
A VIRTUAL CELL WITH 127 GENES. TOMITA MASARU, KENTA HASHIMOTO, KOUICHI TAKAHASHI, TOM SHIMIZU, YURI MATSUZAKI, FUMIHIKO MIYOSHI, KANAKO SAITO, SAKURA TANIDA, KATSUYUKI YUGI, J. CRAIG VENTER, CLYDE A. HUTCHISON
KROGH ANDERS
A MODULAR METAPROFILE-BASED SYSTEM FOR PREDICTION AND ANALYSIS OF EUKARYOTIC PROMOTERS. JUNIER THOMAS, KROGH ANDERS, BUCHER PHILIPP
KROPATCHEV K.Y.
THE GLUCOCORTICOID-CONTROLLED GENE REGULATORY REGIONS DATABASE (GR-TRRD): THE USING FOR THE ELUCIDATION OF THE MECHANISMS OF CHEMICAL HEPATOCARCINOGENS ACTION. MERKULOVA T.I., MERKLOV V.M., KROPATCHEV K.Y., KALEDIN V.I.
KUROPATOV D.A.
AUTOMATIC GENERATION OF RECOGNITION PROGRAMS FOR AMINO ACID SEQUENCES. VALUEV V.P., KUROPATOV D.A., PONOMARENKO M.P.
KUTUZOVA G.I.
MOLECULAR MECHANISMS OF PROMOTER-POLYMERASE RECOGNITION. ELECTROSTATIC INTERACTIONS IN PROMOTERS RECOGNIZED BY E.COLI Esigma70. KAMZOLOVA S.G., DZHELYADIN T.R., SOROKIN A.A., IVANOVA N.N., KUTUZOVA G.I., ESIPOVA N.G., POLOZOV R.V.
SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THE DNA TOPOISOMERASE I SITES. PONOMARENKO M.P., VOROBIEV D.G., PONOMARENKO J.V., KUZIN F.E., GRUZDEV A.D., KOLCHANOV N.A.
KVASHNINA E.V.
STRUCTURAL AND COMPOSITIONAL FEATURES OF 5’ UNTRANSLATED REGIONS OF HIGHER PLANT MRNAS. KOCHETOV A.V., PILUGIN M.V., KOLPAKOV F.A., BABENKO V.N., KVASHNINA E.V., SHUMNY V.K.
L
LANGE M
MOLECULAR DATABASE INTEGRATION: ANALYSIS OF METABOLIC NETWORK CONTROL. FREIER A., HODING M., HOFESTADT R., LANGE M, SCHOLZ U.
LAVRENTIEVA M.V.
THREE SUBFAMILIES OF SHORT INTERSPERSED ELEMENTS OF THE DOG GENOME: POSSIBLE ORIGIN AND FUNCTIONS. KOLESNIKOV N.N., ROGOZIN I.B., LAVRENTIEVA M.V., ELISAPHENKO E.A.
LAVRYUSHEV S.V.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
A SYSTEM FOR ACTIVATION OF THE TRRD DATABASE: FURTHER DEVELOPMENT OF GENEEXPRESS. FROLOV A.S., LAVRYUSHEV S.V., VOROBIEV D.G., GRIGOROVICH D.A.
LEFRANC MARIE-PAULE
IMGT ALGORITHM AND RULES FOR IMMUNOGLOBULIN AND T-CELL RECEPTOR MOTIF RECOGNITION. GIUDICELLI VERONIQUE, CHAUME DENYS, MENNESSIER GERARD, LEFRANC MARIE-PAULE
LEONTIEV A.
CONTEXT-FREE METHOD OF PATTERN RECOGNITION IN THE GENETIC TEXTS. AKBEROVA N., KOLPAKOV A., LEONTIEV A.
LEVITSKY V.G.
B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., VOROBIEV D.G., LEVITSKY V.G., PODKOLODNAYA O.A., OVERTON G.C., KOLCHANOV N.A.
FINE STRUCTURE OF THE PROFILE OF BENDING STIFFNESS ENERGY OF NUCLEOSOMAL DNA. LEVITSKY V.G.
LIKHACHEVA E.
THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER. LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
LIKHOSHVAI V.A.
THEORETICAL ANALYSIS OF POSSIBLE EVOLUTIONARY TRENDS IN CODON DISTRIBUTION ALONG THE mRNA. LIKHOSHVAI V.A., MATUSHKIN Yu.G.
LIMSOON WONG
EXTRACTING KOZAK CONSENSUS SEQUENCE USING KLEISLI. JING CHEN, NAM-HAI CHUA, DAPHNA STRAUSS, LIMSOON WONG
LIPMAN D.J.
A NATURAL TAXONOMY OF GENE FAMILIES FROM COMPLETE GENOMES. TATUSOV R.L., KOONIN E.V., LIPMAN D.J.
LOBRY J.R.
ASYMMETRICAL CODING SEQUENCE REPARTITION AND CODON ADAPTATION INDEX VALUES BETWEEN LEADING AND LAGGING STRANDS IN SEVEN BACTERIAL SPECIES. PERRIERE G., LOBRY J.R.
LUKASHEV V.A.
DISTURBANCES OF GENOM REGULATION AS THE CONSEQUENCE OF THE STRUCTURAL LIKENESS OF HIV-1 ENV PROTEINS AND HUMAN APOLIPOPROTEIN A-I. PANIN L.E., LUKASHEV V.A., GIMAUTDINOVA O.I.
ANTIGENIC MIMICRY OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 AS A RESULT OF STRUCTURAL SIMILARITY OF PROTEIN GP120 AND HUMAN APOLIPOPROTEIN A-1. LUKASHEV V.A., FROLOV A.S., PANIN L.E., GIMAUTDINOVA O.I.
THEORETICAL ANALYSIS OF POSSIBLE EVOLUTIONARY TRENDS IN CODON DISTRIBUTION ALONG THE mRNA. LIKHOSHVAI V.A., MATUSHKIN Yu.G.
THEORETICAL ANALYSIS OF MUTATION PATTERN OF THE CYTOCHROME P450 SUPERFAMILY. MATUSHKIN Yu.G., MOROZOVA I.N., MOROZOV P.S.
MEEK S.
CHARACTERIZATION OF THE COMPACT MODEL GENOME OF THE JAPANESE PUFFER FISH (FUGU RUBRIPES) USING A COSMID SEQUENCE SCANNING APPROACH. ELGAR G., CLARK M.S., EDWARDS Y.J.K., MEEK S., SMITH S., UMRANIA Y., WARNER S., WILLIAMS G., BISHOP M.J.
MENDOZA LUIS
FLOWER MORPHOGENESIS IN ARABIDOPSIS THALIANA: A LOGICAL ANALYSIS. MENDOZA LUIS, ALVAREZ-BUYLLA ELENA, THIEFFRY DENIS
MENNESSIER GERARD
IMGT ALGORITHM AND RULES FOR IMMUNOGLOBULIN AND T-CELL RECEPTOR MOTIF RECOGNITION. GIUDICELLI VERONIQUE, CHAUME DENYS, MENNESSIER GERARD, LEFRANC MARIE-PAULE
MERKLOV V.M.
THE GLUCOCORTICOID-CONTROLLED GENE REGULATORY REGIONS DATABASE (GR-TRRD): THE USING FOR THE ELUCIDATION OF THE MECHANISMS OF CHEMICAL HEPATOCARCINOGENS ACTION. MERKULOVA T.I., MERKLOV V.M., KROPATCHEV K.Y., KALEDIN V.I.
MERKULOVA T.I.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
THE GLUCOCORTICOID-CONTROLLED GENE REGULATORY REGIONS DATABASE (GR-TRRD): THE USING FOR THE ELUCIDATION OF THE MECHANISMS OF CHEMICAL HEPATOCARCINOGENS ACTION. MERKULOVA T.I., MERKLOV V.M., KROPATCHEV K.Y., KALEDIN V.I.
BUSINESS GAME EQUILIBRIUM FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. PONOMARENKO M.P., ISHCHENKO I.V., FROLOV A.S., MININA A.V., KONEVA E.I., MIKHAILOV Yu.I., IVASHIN S.A.
THE PRACTICAL STUDY OF THE BEHAVIOR OF THE COMPLEX DYNAMIC SYSTEMS ON THE BASIS OF THE LIFE GAME FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. AFONNIKOV D., KOLESOV G.B., MININA A.V., MIKHAILOV Yu.I., IVASHIN S.A.
BUSINESS GAME HUMAN GENOME FOR EDUCATION IN BUSINESS, LAW AND COMMERCE. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., MININA A.V., IVASHIN S.A., MIKHAILOV Yu.I.
BUSINESS GAME EQUILIBRIUM FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. PONOMARENKO M.P., ISHCHENKO I.V., FROLOV A.S., MININA A.V., KONEVA E.I., MIKHAILOV Yu.I., IVASHIN S.A.
THE PRACTICAL STUDY OF THE BEHAVIOR OF THE COMPLEX DYNAMIC SYSTEMS ON THE BASIS OF THE LIFE GAME FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. AFONNIKOV D., KOLESOV G.B., MININA A.V., MIKHAILOV Yu.I., IVASHIN S.A.
BUSINESS GAME HUMAN GENOME FOR EDUCATION IN BUSINESS, LAW AND COMMERCE. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., MININA A.V., IVASHIN S.A., MIKHAILOV Yu.I.
MIRONOV A.A.
COMPUTER ANALYSIS OF TRANSCRIPTION REGULATORY PATTERNS IN COMPLETELY SEQUENCED BACTERIAL GENOMES. GELFAND M.S., MIRONOV A.A.
GENE RECOGNITION USING EST DATA: UNEXPECTEDLY FREQUENT ALTERNATIVE SPLICING OF HUMAN GENES. MIRONOV A.A., GELFAND M.S.
MISHCHENKO T.M.
ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES. PONOMARENKO J.V., FURMAN D.P., MISHCHENKO T.M., KATOKHINA L.V., VALUEV V.P., PEREGOEDOVA E.L., FROLOV A.S., PODKOLODNY N.L., PONOMARENKO M.P.
MIWA JOHJI
A THREE-LAYER MODEL FOR DESCRIBING DEVELOPMENT OF C.ELEGANS. TSUGUCHIKA KAMINUMA, IGARASHI TAKAKO, NAKANO TATSUYA, SASAKI SHINYA, MIWA JOHJI
MOLODIN V.I.
RECONSTRUCTION OF THE GENOFOND PECULIARITIES OF THE ANCIENT PAZYRYK POPULATION (I-II MILLENIUM BC) FROM GORNY ALTAI ACCORDING TO THE MTDNA STRUCTURE. VOEVODA M.I., SITNIKOVA V.V., ROMASHCHENKO A.G., CHIKISHEVA T.A., POLOS’MAK N.V., MOLODIN V.I.
MOROZOV P.S.
THEORETICAL ANALYSIS OF MUTATION PATTERN OF THE CYTOCHROME P450 SUPERFAMILY. MATUSHKIN Yu.G., MOROZOVA I.N., MOROZOV P.S.
MOROZOVA I.N.
THEORETICAL ANALYSIS OF MUTATION PATTERN OF THE CYTOCHROME P450 SUPERFAMILY. MATUSHKIN Yu.G., MOROZOVA I.N., MOROZOV P.S.
MUSTAFAYEV N.Sh.
SOME POSSIBLE ELEMENTS OF TRANSCRIPTION REGULATION OF RICE CHLOROPLAST ENCODED GENES. SHAHMURADOV I.A., MUSTAFAYEV N.Sh., ALIEV J.A.
N
NAKANO TATSUYA
A THREE-LAYER MODEL FOR DESCRIBING DEVELOPMENT OF C.ELEGANS. TSUGUCHIKA KAMINUMA, IGARASHI TAKAKO, NAKANO TATSUYA, SASAKI SHINYA, MIWA JOHJI
NAM-HAI CHUA
EXTRACTING KOZAK CONSENSUS SEQUENCE USING KLEISLI. JING CHEN, NAM-HAI CHUA, DAPHNA STRAUSS, LIMSOON WONG
NAUMOCHKIN A.N.
PROGRAMS FOR DATA INPUT TO THE TRANSCRIPTION REGULATORY REGIONS DATABASE. ANANKO E.A., NAUMOCHKIN A.N., FOKIN O.N., FROLOV A.S.
NEFEDOV V.P.
GENETIC LEVEL OF BIOPROCESSES REGULATION AND BIOSYSTEMS IN EXTREME CONDITIONS. NEFEDOV V.P., CHEREPANOVA E.Yu.
NEVINSKY G.A.
THE BASIC PRINCIPLES OF DNA RECOGNITION BY SEQUENCE DEPENDENT AND INDEPENDENT ENZYMES. NEVINSKY G.A., VINOGRADOVA N.L., BUGREEV D.V., ISHENKO A.A., VASYUTINA E.L., ULYANOVA N.P., ZAKHAROVA O.D., KOLOCHEVA T.A.
INTERPRETATION OF X-RAY ANALYSIS DATA OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE ENZYME. BUGREEV D.V., VASYUTINA E.L., BUNEVA V.N., NEVINSKY G.A.
LACTOFERRIN IS A NEW TRANSCRIPTIONAL FACTOR HAVING MANY DIFFERENT UNIQUE BIOLOGICAL FUNCTIONS. KANYSHKOVA T.G., SEMENOV D.V., BUNEVA V.N., NEVINSKY G.A.
NISHIKAWA KEN
DETECTION OF SIMILAR PROTEINS BY THE INVERSE-FOLDING PROTOCOL. OTA MOTONORI, NISHIKAWA KEN
O
ORENGO CHRISTINE
STRUCTURAL AND FUNCTIONAL ANNOTATION OF GENOMIC SEQUENCES:ASSIGNMENT OF FOLD FAMILY AND SORTING OF PROTEINS WITH RESPECT TO SUBCELLULAR LOCALIZATION. EISENHABER FRANK, BORK PEER, HUYNEN MARTIJN, ORENGO CHRISTINE, SCHULTZ JORG, SUNYAEV SHAMIL R., YUAN YANPING
FUNCTIONAL ACTIVITY OF A NOVEL GCC-ELEMENT FOUND IN HOMOLOGOUS REGULATORY REGIONS OF SOME HUMAN GENES. PEREVOZCHIKOV A., ORLOV S.
OSADA YUKO
COMPUTER ANALYSIS OF BASE PAIRING FREE-ENERGY BETWEEN SHINE-DALGARNO SEQUENCE AND 16S RRNA SEQUENCE IN VARIOUS PROCARYOTES. OSADA YUKO, RINTARO SAITO, TOMITA MASARU
OSTELL J.
GENOMES DATA IN ENTREZ: REPRESENTATION AND ANALYSIS. TATUSOVA T.A., OSTELL J.
OTA MOTONORI
DETECTION OF SIMILAR PROTEINS BY THE INVERSE-FOLDING PROTOCOL. OTA MOTONORI, NISHIKAWA KEN
OVERTON G.C.
EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION. STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., VOROBIEV D.G., LEVITSKY V.G., PODKOLODNAYA O.A., OVERTON G.C., KOLCHANOV N.A.
RECOGNITION OF THE SUBSET OF EUKARYOTIC PROMOTERS. KONDRAKHIN Y.V., OVERTON G.C.
RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., PODKOLODNAYA O.A., VOROBIEV D.G., KOLCHANOV N.A., OVERTON G.C.
REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES. PONOMARENKO M.P., KOLCHANOV N.A., PONOMARENKO J.V., FROLOV A.S., PODKOLODNAYA O.A., VOROBIEV D.G., PODKOLODNY N.L., OVERTON G.C.
P
PANIN L.E.
DISTURBANCES OF GENOM REGULATION AS THE CONSEQUENCE OF THE STRUCTURAL LIKENESS OF HIV-1 ENV PROTEINS AND HUMAN APOLIPOPROTEIN A-I. PANIN L.E., LUKASHEV V.A., GIMAUTDINOVA O.I.
ANTIGENIC MIMICRY OF HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 AS A RESULT OF STRUCTURAL SIMILARITY OF PROTEIN GP120 AND HUMAN APOLIPOPROTEIN A-1. LUKASHEV V.A., FROLOV A.S., PANIN L.E., GIMAUTDINOVA O.I.
PANKRATOVA E.V.
OCT PROTEINS AND OCT GENES: DNA RECOGNITION AND TRANSCRIPTIONALREGULATION. POLANOVSKY O.L., PANKRATOVA E.V., STEPCHENKO A.G.
PEDERSEN ANDERS GORM
DNA STRUCTURE IN HUMAN RNA POLYMERASE II PROMOTERS. PEDERSEN ANDERS GORM, BALDI PIERRE, CHAUVIN YVES, BRUNAK SOREN
ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES. PONOMARENKO J.V., FURMAN D.P., MISHCHENKO T.M., KATOKHINA L.V., VALUEV V.P., PEREGOEDOVA E.L., FROLOV A.S., PODKOLODNY N.L., PONOMARENKO M.P.
PEREVOZCHIKOV A.
FUNCTIONAL ACTIVITY OF A NOVEL GCC-ELEMENT FOUND IN HOMOLOGOUS REGULATORY REGIONS OF SOME HUMAN GENES. PEREVOZCHIKOV A., ORLOV S.
PEREZ-RUEDA E.
ANALYSIS OF TRANSCRIPTIONAL FACTORS IN E. COLI. PEREZ-RUEDA E., VAN HELDEN J., WODAK S., COLLADO-VIDES J.
PERRIERE G.
ASYMMETRICAL CODING SEQUENCE REPARTITION AND CODON ADAPTATION INDEX VALUES BETWEEN LEADING AND LAGGING STRANDS IN SEVEN BACTERIAL SPECIES. PERRIERE G., LOBRY J.R.
PESHKIN L.
SEGMENTATION OF YEAST DNA USING HIDDEN MARKOV MODELS. PESHKIN L., GELFAND M.S.
STRUCTURAL AND COMPOSITIONAL FEATURES OF 5’ UNTRANSLATED REGIONS OF HIGHER PLANT MRNAS. KOCHETOV A.V., PILUGIN M.V., KOLPAKOV F.A., BABENKO V.N., KVASHNINA E.V., SHUMNY V.K.
PINCHUK A.O.
SOME PECULIARITIES OF LONG-RANGE INTERACTION BETWEEN NUCLEOTIDES IN THE INTRACELLULAR LIQUIDS. PINCHUK A.O., VYSOTSKII V.I.
PODKOLODNAYA O.A.
EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION. STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
THE ESRG-TRRD: DATABASE OF GENES WITH SPECIFIC TRANSCRIPTION REGULATION IN ERYTHROID CELLS. PODKOLODNAYA O.A., STEPANENKO I.L.
SAMPLES AND ALIGNED: DATABASES FOR FUNCTIONAL SITE SEQUENCES. VOROBIEV D.G., PONOMARENKO J.V., PODKOLODNAYA O.A.
B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., VOROBIEV D.G., LEVITSKY V.G., PODKOLODNAYA O.A., OVERTON G.C., KOLCHANOV N.A.
SEARCH FOR DEGENERATE OLIGONUCLEOTIDE MOTIFS IN TRANSCRIPTION FACTOR BINDING SITES AND EUKARYOTIC PROMOTERS (THE SYSTEM ARGO). VISHNEVSKY O.V., PODKOLODNAYA O.A., BABENKO V.N.
RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., PODKOLODNAYA O.A., VOROBIEV D.G., KOLCHANOV N.A., OVERTON G.C.
REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES. PONOMARENKO M.P., KOLCHANOV N.A., PONOMARENKO J.V., FROLOV A.S., PODKOLODNAYA O.A., VOROBIEV D.G., PODKOLODNY N.L., OVERTON G.C.
PODKOLODNY N.L.
EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION. STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES. PONOMARENKO J.V., FURMAN D.P., MISHCHENKO T.M., KATOKHINA L.V., VALUEV V.P., PEREGOEDOVA E.L., FROLOV A.S., PODKOLODNY N.L., PONOMARENKO M.P.
REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES. PONOMARENKO M.P., KOLCHANOV N.A., PONOMARENKO J.V., FROLOV A.S., PODKOLODNAYA O.A., VOROBIEV D.G., PODKOLODNY N.L., OVERTON G.C.
MGL-PROT: THE ANTHOLOGY-BASED QUERY LANGUAGE FOR THE USER SEARCH FOR THE 3D STRUCTURES AND FUNCTIONS OF PROTEINS IN THE WWW-AVAILABLE DATABASES. KOLPAKOV F.A., FROLOV A.S., PONOMARENKO M.P., PODKOLODNY N.L.
PODSOSONNY V.A.
THE LEUCINE MOTIF IN SUBUNITS 6 AND 9 OF PLANT MITOCHONDRIAL ATP SYNTHASE PROVIDING PRESUMABLY THE ASSEMBLY OF THE MEMBRANE PART OF THE ENZYME. KONSTANTINOV Yu.M., ARZIEV A.Sh., PODSOSONNY V.A.
POKROVSKI SERGEI V.
A PROGRAM FOR CALCULATING GAPPED DINUCLEOTIDE CORRELATIONS IN NUCLEIC ACID SEQUENCES AND ITS APPLICATION TO REVEAL SPECIFIC SEQUENCE FEATURES OF X-LINKED PROMOTERS IN DROSOPHILA. ARKHIPOVA IRINA R., POKROVSKI SERGEI V.
POLANOVSKY O.L.
OCT PROTEINS AND OCT GENES: DNA RECOGNITION AND TRANSCRIPTIONALREGULATION. POLANOVSKY O.L., PANKRATOVA E.V., STEPCHENKO A.G.
POLOS’MAK N.V.
RECONSTRUCTION OF THE GENOFOND PECULIARITIES OF THE ANCIENT PAZYRYK POPULATION (I-II MILLENIUM BC) FROM GORNY ALTAI ACCORDING TO THE MTDNA STRUCTURE. VOEVODA M.I., SITNIKOVA V.V., ROMASHCHENKO A.G., CHIKISHEVA T.A., POLOS’MAK N.V., MOLODIN V.I.
POLOZOV R.V.
MOLECULAR MECHANISMS OF PROMOTER-POLYMERASE RECOGNITION. ELECTROSTATIC INTERACTIONS IN PROMOTERS RECOGNIZED BY E.COLI Esigma70. KAMZOLOVA S.G., DZHELYADIN T.R., SOROKIN A.A., IVANOVA N.N., KUTUZOVA G.I., ESIPOVA N.G., POLOZOV R.V.
PONOMARENKO J.V.
SAMPLES AND ALIGNED: DATABASES FOR FUNCTIONAL SITE SEQUENCES. VOROBIEV D.G., PONOMARENKO J.V., PODKOLODNAYA O.A.
ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES. PONOMARENKO J.V., FURMAN D.P., MISHCHENKO T.M., KATOKHINA L.V., VALUEV V.P., PEREGOEDOVA E.L., FROLOV A.S., PODKOLODNY N.L., PONOMARENKO M.P.
B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., VOROBIEV D.G., LEVITSKY V.G., PODKOLODNAYA O.A., OVERTON G.C., KOLCHANOV N.A.
RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., PODKOLODNAYA O.A., VOROBIEV D.G., KOLCHANOV N.A., OVERTON G.C.
QUANTITATIVE COMPUTER-ASSISTED ANALYSIS OF THE TATA-BINDING PROTEIN AFFINITY FOR COMPLEMENTARY DUPLEXES OF SYNTHETIC OLIGODEOXYRIBONUCLEOTIDES. SAVINKOVA L.K., SOKOLENKO A.A., RAU V.A., KOBZEV V.F., PONOMARENKO M.P., PONOMARENKO J.V., KOLCHANOV N.A.
REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES. PONOMARENKO M.P., KOLCHANOV N.A., PONOMARENKO J.V., FROLOV A.S., PODKOLODNAYA O.A., VOROBIEV D.G., PODKOLODNY N.L., OVERTON G.C.
CLASSIFICATION OF EUKARYOTIC TRANSCRIPTION FACTORS BASED ON SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THEIR BINDING SITES. PONOMARENKO J.V.
THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER. LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
BUSINESS GAME HUMAN GENOME FOR EDUCATION IN BUSINESS, LAW AND COMMERCE. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., MININA A.V., IVASHIN S.A., MIKHAILOV Yu.I.
SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THE DNA TOPOISOMERASE I SITES. PONOMARENKO M.P., VOROBIEV D.G., PONOMARENKO J.V., KUZIN F.E., GRUZDEV A.D., KOLCHANOV N.A.
PONOMARENKO M.P.
ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES. PONOMARENKO J.V., FURMAN D.P., MISHCHENKO T.M., KATOKHINA L.V., VALUEV V.P., PEREGOEDOVA E.L., FROLOV A.S., PODKOLODNY N.L., PONOMARENKO M.P.
B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., VOROBIEV D.G., LEVITSKY V.G., PODKOLODNAYA O.A., OVERTON G.C., KOLCHANOV N.A.
RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., PODKOLODNAYA O.A., VOROBIEV D.G., KOLCHANOV N.A., OVERTON G.C.
QUANTITATIVE COMPUTER-ASSISTED ANALYSIS OF THE TATA-BINDING PROTEIN AFFINITY FOR COMPLEMENTARY DUPLEXES OF SYNTHETIC OLIGODEOXYRIBONUCLEOTIDES. SAVINKOVA L.K., SOKOLENKO A.A., RAU V.A., KOBZEV V.F., PONOMARENKO M.P., PONOMARENKO J.V., KOLCHANOV N.A.
REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES. PONOMARENKO M.P., KOLCHANOV N.A., PONOMARENKO J.V., FROLOV A.S., PODKOLODNAYA O.A., VOROBIEV D.G., PODKOLODNY N.L., OVERTON G.C.
EUKARYOTIC MRNAS ENCODING ABUNDANT AND SCARCE PROTEINS ARE DISSIMILAR IN MANY STRUCTURAL FEATURES OF 5’-UNTRANSLATED LEADERS. KOCHETOV A.V., PONOMARENKO M.P., VOROBIEV D.G., FROLOV A.S., KISSELEV L.L., KOLCHANOV N.A.
THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER. LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
MGL-PROT: THE ANTHOLOGY-BASED QUERY LANGUAGE FOR THE USER SEARCH FOR THE 3D STRUCTURES AND FUNCTIONS OF PROTEINS IN THE WWW-AVAILABLE DATABASES. KOLPAKOV F.A., FROLOV A.S., PONOMARENKO M.P., PODKOLODNY N.L.
LIKENESS: A SYSTEM SEARCHING FOR AND ALIGNING SIMILAR PROTEIN CONFORMATIONS. PONOMARENKO M.P., KOLCHANOV N.A., SHINDYALOV I., BOURNE P.
AUTOMATIC GENERATION OF RECOGNITION PROGRAMS FOR AMINO ACID SEQUENCES. VALUEV V.P., KUROPATOV D.A., PONOMARENKO M.P.
BUSINESS GAME EQUILIBRIUM FOR EDUCATION IN ECONOMICS, COMMERCE, AND LAW. PONOMARENKO M.P., ISHCHENKO I.V., FROLOV A.S., MININA A.V., KONEVA E.I., MIKHAILOV Yu.I., IVASHIN S.A.
BUSINESS GAME HUMAN GENOME FOR EDUCATION IN BUSINESS, LAW AND COMMERCE. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., MININA A.V., IVASHIN S.A., MIKHAILOV Yu.I.
SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THE DNA TOPOISOMERASE I SITES. PONOMARENKO M.P., VOROBIEV D.G., PONOMARENKO J.V., KUZIN F.E., GRUZDEV A.D., KOLCHANOV N.A.
POPOVA T.G.
AUTHOMATIC CLASSIFICATION OF NUCLEOTIDE SEQUENCES AND ITS RELATION TO NATURAL TAXONOMY AND PROTEIN FUNCTION. GORBAN A.N., POPOVA T.G., SADOVSKY M.G.
INVARIANT SECONDARY STRUCTURE OF ALU REPEATS PREDETERMINES CLUSTERIZATION OF REGULATORY ELEMENTS IN HUMAN GENOME. BLINOV V.M., UVAROV D.L., RESENCHUK S.M., CHIRIKOVA G.B., KISSELEV L.L.
RINTARO SAITO
ON NEGATIVE SELECTION AGAINST ATG TRIPLETS NEAR START CODONS IN EUCARYOTIC AND PROCARYOTIC GENOMES. RINTARO SAITO, TOMITA MASARU
COMPUTER ANALYSIS OF BASE PAIRING FREE-ENERGY BETWEEN SHINE-DALGARNO SEQUENCE AND 16S RRNA SEQUENCE IN VARIOUS PROCARYOTES. OSADA YUKO, RINTARO SAITO, TOMITA MASARU
ROGOZIN I.B.
IN SILICO IDENTIFICATION OF MARS/SARS IN DNA SEQUENCES. GLAZKO G.V., ROGOZIN I.B., GLAZKOV M.V.
WEBGENE: INTERACTIVE TOOLS FOR PREDICTION AND ANALYSIS OF PROTEIN-CODING GENES STRUCTURE IN INTERNET. MILANESI L., ROGOZIN I.B., D’ANGELO D.
THREE SUBFAMILIES OF SHORT INTERSPERSED ELEMENTS OF THE DOG GENOME: POSSIBLE ORIGIN AND FUNCTIONS. KOLESNIKOV N.N., ROGOZIN I.B., LAVRENTIEVA M.V., ELISAPHENKO E.A.
SEARCHING FOR THE IMMUNOGLOBULIN SUPERFAMILY GENES IN C.ELEGANS. TARANIN A.V., ROGOZIN I.B.
REGRESSION ANALYSIS OF MUTATIONAL SPECTRA. ROGOZIN I.B., BERIKOV V.B.
THE SEQUENCING AND MOLECULAR ANALYSIS OF COXI GENE FRAGMENTS OF WILD PERENNIAL CROP ELYMUS SIBIRICUS L.. FALSHINA I.V., VERBITSKII D.S., ROGOZIN I.B., KONSTANTINOV Yu.M., TAUSON E.L.
ROMASHCHENKO A.G.
TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): NEW POSSIBILITIES PROVIDED BY RELEASE 4.0. KOLCHANOV N.A., IGNATIEVA E.V., KEL-MARGOULIS O.V., KEL A.E., ANANKO E.A., PODKOLODNAYA O.A., STEPANENKO I.L., MERKULOVA T.I., GORYACHKOVSKY T.N., KOLPAKOV F.A., PODKOLODNY N.L., LAVRYUSHEV S.V., GRIGOROVICH D.A., FROLOV A.S., ROMASHCHENKO A.G.
COMPEL: A DATABASE ON COMPOSITE REGULATORY ELEMENTS. KEL-MARGOULIS O.V., KEL A.E., FRISCH M., ROMASHCHENKO A.G., KOLCHANOV N.A., WINGENDER E.
RECONSTRUCTION OF THE GENOFOND PECULIARITIES OF THE ANCIENT PAZYRYK POPULATION (I-II MILLENIUM BC) FROM GORNY ALTAI ACCORDING TO THE MTDNA STRUCTURE. VOEVODA M.I., SITNIKOVA V.V., ROMASHCHENKO A.G., CHIKISHEVA T.A., POLOS’MAK N.V., MOLODIN V.I.
ROYTBERG M.A.
SOME PROBLEMS OF GENE RECOGNITION IN PROTIST DNA. ASTAKHOVA T.V., GELFAND M.S., ROYTBERG M.A.
SEQUENCE ALIGNMENT WITHOUT GAP PENALTIES. ROYTBERG M.A., SEMIONENKOV M.N., TABOLINA O.Yu.
RUDENKO V.M.
TRIPLET PERIODICITY OF THE DNA CODING AND NONCODING REGIONS. RUDENKO V.M., KOROTKOV E.V.
MINIMUM ENTROPY PRINCIPLE AND CLASSIFICATION OF SYMBOLS FOR REVEALING STATISTICAL REGULARITIES IN A TEXT. BUGAENKO N.N., GORBAN A.N., SAPOZHNIKOV A.N.
SASAKI SHINYA
A THREE-LAYER MODEL FOR DESCRIBING DEVELOPMENT OF C.ELEGANS. TSUGUCHIKA KAMINUMA, IGARASHI TAKAKO, NAKANO TATSUYA, SASAKI SHINYA, MIWA JOHJI
SAVINKOVA L.K.
QUANTITATIVE COMPUTER-ASSISTED ANALYSIS OF THE TATA-BINDING PROTEIN AFFINITY FOR COMPLEMENTARY DUPLEXES OF SYNTHETIC OLIGODEOXYRIBONUCLEOTIDES. SAVINKOVA L.K., SOKOLENKO A.A., RAU V.A., KOBZEV V.F., PONOMARENKO M.P., PONOMARENKO J.V., KOLCHANOV N.A.
STRUCTURE-FUNCTIONAL HOMOLOGY OF THE PROKARYOTIC AND EUKARYOTIC RNA POLYMERASES. SAVINKOVA L.K., SOKOLENKO A.A., SEDOVA V.M., RAU V.A., TULOKHONOV I.I, KOBZEV V.F., ARSHINOVA T.V.
SAVOSTYANOVA E.G.
GENET, A DATABASE OF GENETIC NETWORKS. SAMSONOVA M.G., SAVOSTYANOVA E.G., SEROV V.N., SPIROV A.V., REINITZ J.
SCHOLZ U.
MOLECULAR DATABASE INTEGRATION: ANALYSIS OF METABOLIC NETWORK CONTROL. FREIER A., HODING M., HOFESTADT R., LANGE M, SCHOLZ U.
SCHULTZ JORG
STRUCTURAL AND FUNCTIONAL ANNOTATION OF GENOMIC SEQUENCES:ASSIGNMENT OF FOLD FAMILY AND SORTING OF PROTEINS WITH RESPECT TO SUBCELLULAR LOCALIZATION. EISENHABER FRANK, BORK PEER, HUYNEN MARTIJN, ORENGO CHRISTINE, SCHULTZ JORG, SUNYAEV SHAMIL R., YUAN YANPING
SEDOVA V.M.
STRUCTURE-FUNCTIONAL HOMOLOGY OF THE PROKARYOTIC AND EUKARYOTIC RNA POLYMERASES. SAVINKOVA L.K., SOKOLENKO A.A., SEDOVA V.M., RAU V.A., TULOKHONOV I.I, KOBZEV V.F., ARSHINOVA T.V.
SELEDTSOV I.A.
RAPID ESTIMATES OF STATISTICAL SIGNIFICANCE OF THE PAIRWISE NUCLEOTIDE SEQUENCE ALIGNMENT. SELEDTSOV I.A., KOLPAKOV F.A.
SEMENOV D.V.
LACTOFERRIN IS A NEW TRANSCRIPTIONAL FACTOR HAVING MANY DIFFERENT UNIQUE BIOLOGICAL FUNCTIONS. KANYSHKOVA T.G., SEMENOV D.V., BUNEVA V.N., NEVINSKY G.A.
SEMIONENKOV M.N.
SEQUENCE ALIGNMENT WITHOUT GAP PENALTIES. ROYTBERG M.A., SEMIONENKOV M.N., TABOLINA O.Yu.
SEROV V.N.
GENET, A DATABASE OF GENETIC NETWORKS. SAMSONOVA M.G., SAVOSTYANOVA E.G., SEROV V.N., SPIROV A.V., REINITZ J.
SHAHMURADOV I.A.
SOME POSSIBLE ELEMENTS OF TRANSCRIPTION REGULATION OF RICE CHLOROPLAST ENCODED GENES. SHAHMURADOV I.A., MUSTAFAYEV N.Sh., ALIEV J.A.
SHAM M.H.
LARGE SCALE SCREENING FOR TRANSCRIPTION REGULATORY SEQUENCES RECOGNISED BY HOX HOMEODOMAIN PROTEINS. JAKT L.M., SHAM M.H.
SHINDYALOV I.
LIKENESS: A SYSTEM SEARCHING FOR AND ALIGNING SIMILAR PROTEIN CONFORMATIONS. PONOMARENKO M.P., KOLCHANOV N.A., SHINDYALOV I., BOURNE P.
SHUMNY V.K.
STRUCTURAL AND COMPOSITIONAL FEATURES OF 5’ UNTRANSLATED REGIONS OF HIGHER PLANT MRNAS. KOCHETOV A.V., PILUGIN M.V., KOLPAKOV F.A., BABENKO V.N., KVASHNINA E.V., SHUMNY V.K.
SITNIKOVA V.V.
RECONSTRUCTION OF THE GENOFOND PECULIARITIES OF THE ANCIENT PAZYRYK POPULATION (I-II MILLENIUM BC) FROM GORNY ALTAI ACCORDING TO THE MTDNA STRUCTURE. VOEVODA M.I., SITNIKOVA V.V., ROMASHCHENKO A.G., CHIKISHEVA T.A., POLOS’MAK N.V., MOLODIN V.I.
SMITH S.
CHARACTERIZATION OF THE COMPACT MODEL GENOME OF THE JAPANESE PUFFER FISH (FUGU RUBRIPES) USING A COSMID SEQUENCE SCANNING APPROACH. ELGAR G., CLARK M.S., EDWARDS Y.J.K., MEEK S., SMITH S., UMRANIA Y., WARNER S., WILLIAMS G., BISHOP M.J.
SOKOLENKO A.A.
QUANTITATIVE COMPUTER-ASSISTED ANALYSIS OF THE TATA-BINDING PROTEIN AFFINITY FOR COMPLEMENTARY DUPLEXES OF SYNTHETIC OLIGODEOXYRIBONUCLEOTIDES. SAVINKOVA L.K., SOKOLENKO A.A., RAU V.A., KOBZEV V.F., PONOMARENKO M.P., PONOMARENKO J.V., KOLCHANOV N.A.
STRUCTURE-FUNCTIONAL HOMOLOGY OF THE PROKARYOTIC AND EUKARYOTIC RNA POLYMERASES. SAVINKOVA L.K., SOKOLENKO A.A., SEDOVA V.M., RAU V.A., TULOKHONOV I.I, KOBZEV V.F., ARSHINOVA T.V.
OCT PROTEINS AND OCT GENES: DNA RECOGNITION AND TRANSCRIPTIONALREGULATION. POLANOVSKY O.L., PANKRATOVA E.V., STEPCHENKO A.G.
STOECKERT S.
EPOGERD: A DATABASE ON REGULATION OF EUKARYOTIC GENE EXPRESSION. STOECKERT S., PODKOLODNAYA O.A., KEL A.E., BRUNK B., HAAS J., SALAS F., STEPANENKO I.L., IGNATIEVA E.V., KEL-MARGOULIS O.V., ANANKO E.A., PODKOLODNY N.L., OVERTON G.C., KOLCHANOV N.A.
STORMO GARY D.
IDENTIFYING DNA AND PROTEIN PATTERNS WITH STATISTICALLY SIGNIFICANT ALIGNMENT MATRICES. HERTZ GERALD Z., STORMO GARY D.
SUNYAEV SHAMIL R.
STRUCTURAL AND FUNCTIONAL ANNOTATION OF GENOMIC SEQUENCES:ASSIGNMENT OF FOLD FAMILY AND SORTING OF PROTEINS WITH RESPECT TO SUBCELLULAR LOCALIZATION. EISENHABER FRANK, BORK PEER, HUYNEN MARTIJN, ORENGO CHRISTINE, SCHULTZ JORG, SUNYAEV SHAMIL R., YUAN YANPING
SVISCHEVA G.R.
SELECTIVE MODELS FOR MAPPING OF GENES IDENTIFIED IN RADIATION HYBRIDS. SVISCHEVA G.R.
T
TABOLINA O.Yu.
SEQUENCE ALIGNMENT WITHOUT GAP PENALTIES. ROYTBERG M.A., SEMIONENKOV M.N., TABOLINA O.Yu.
TAKAGI T.
A NEW CUT-OFF ESTIMATING ALGORITHM FOR TRANSCRIPTION FACTOR BINDABILITY ON DNA. TSUNODA T., TAKAGI T.
TAKAKO TAKAI
DEVELOPMENT OF A RECEPTOR DATABASE. KOTOKO NAKATA, TAKAKO TAKAI, TSUGUCHIKA KAMINUMA
TAKANORI WASHIO
ANALYSIS OF COMPLETED GENOMES SUGGESTS THAT HAIRPIN FORMATION IS NOT A UNIVERSAL MECHANISM FOR PROCARYOTIC TRANSCRIPTION TERMINATION. TAKANORI WASHIO, TOMITA MASARU
TARANIN A.V.
SEARCHING FOR THE IMMUNOGLOBULIN SUPERFAMILY GENES IN C.ELEGANS. TARANIN A.V., ROGOZIN I.B.
TATUSOV R.L.
A NATURAL TAXONOMY OF GENE FAMILIES FROM COMPLETE GENOMES. TATUSOV R.L., KOONIN E.V., LIPMAN D.J.
TATUSOVA T.A.
GENOMES DATA IN ENTREZ: REPRESENTATION AND ANALYSIS. TATUSOVA T.A., OSTELL J.
TAUSON E.L.
THE SEQUENCING AND MOLECULAR ANALYSIS OF COXI GENE FRAGMENTS OF WILD PERENNIAL CROP ELYMUS SIBIRICUS L.. FALSHINA I.V., VERBITSKII D.S., ROGOZIN I.B., KONSTANTINOV Yu.M., TAUSON E.L.
TCHURAEU R.N.
THE EQUATIONS OF DYNAMICS OF GENES ACTIVITIES IN A GENERAL VIEW. TCHURAEU R.N.
THIEFFRY DENIS
FLOWER MORPHOGENESIS IN ARABIDOPSIS THALIANA: A LOGICAL ANALYSIS. MENDOZA LUIS, ALVAREZ-BUYLLA ELENA, THIEFFRY DENIS
TITOV I.I.
PREDICTING RNA FOLDING BY GENETIC ALGORITHM WITH LOCAL EXHAUSTION. TITOV I.I., IVANISENKO V.A., KOLCHANOV N.A.
STATISTICAL MODEL OF DOUBLE HELIX GROWTH. TITOV I.I.
FUNCTIONAL RELATIONSHIP BETWEEN AMINO ACID RESIDUES AT N- AND C-TERMINI OF DNA-BINDING REGIONS OF TRANSCRIPTION FACTORS CREB AND AP-1 REVEALED BY ANALYZING THE PAIR CORRELATIONS OF AMINO ACID SUBSTITUTIONS. AFONNIKOV D., TITOV I.I.
TOM SHIMIZU
A VIRTUAL CELL WITH 127 GENES. TOMITA MASARU, KENTA HASHIMOTO, KOUICHI TAKAHASHI, TOM SHIMIZU, YURI MATSUZAKI, FUMIHIKO MIYOSHI, KANAKO SAITO, SAKURA TANIDA, KATSUYUKI YUGI, J. CRAIG VENTER, CLYDE A. HUTCHISON
TOMITA MASARU
A VIRTUAL CELL WITH 127 GENES. TOMITA MASARU, KENTA HASHIMOTO, KOUICHI TAKAHASHI, TOM SHIMIZU, YURI MATSUZAKI, FUMIHIKO MIYOSHI, KANAKO SAITO, SAKURA TANIDA, KATSUYUKI YUGI, J. CRAIG VENTER, CLYDE A. HUTCHISON
ANALYSIS OF COMPLETED GENOMES SUGGESTS THAT HAIRPIN FORMATION IS NOT A UNIVERSAL MECHANISM FOR PROCARYOTIC TRANSCRIPTION TERMINATION. TAKANORI WASHIO, TOMITA MASARU
ON NEGATIVE SELECTION AGAINST ATG TRIPLETS NEAR START CODONS IN EUCARYOTIC AND PROCARYOTIC GENOMES. RINTARO SAITO, TOMITA MASARU
COMPUTER ANALYSIS OF BASE PAIRING FREE-ENERGY BETWEEN SHINE-DALGARNO SEQUENCE AND 16S RRNA SEQUENCE IN VARIOUS PROCARYOTES. OSADA YUKO, RINTARO SAITO, TOMITA MASARU
TRIFONOV E.N.
HOW BASICS OF PROTEIN EVOLUTION COULD HELP THE GENE FINDING. TRIFONOV E.N.
TSUGUCHIKA KAMINUMA
DEVELOPMENT OF A RECEPTOR DATABASE. KOTOKO NAKATA, TAKAKO TAKAI, TSUGUCHIKA KAMINUMA
A THREE-LAYER MODEL FOR DESCRIBING DEVELOPMENT OF C.ELEGANS. TSUGUCHIKA KAMINUMA, IGARASHI TAKAKO, NAKANO TATSUYA, SASAKI SHINYA, MIWA JOHJI
TSUNODA T.
A NEW CUT-OFF ESTIMATING ALGORITHM FOR TRANSCRIPTION FACTOR BINDABILITY ON DNA. TSUNODA T., TAKAGI T.
TULOKHONOV I.I
STRUCTURE-FUNCTIONAL HOMOLOGY OF THE PROKARYOTIC AND EUKARYOTIC RNA POLYMERASES. SAVINKOVA L.K., SOKOLENKO A.A., SEDOVA V.M., RAU V.A., TULOKHONOV I.I, KOBZEV V.F., ARSHINOVA T.V.
U
ULYANOVA N.P.
THE BASIC PRINCIPLES OF DNA RECOGNITION BY SEQUENCE DEPENDENT AND INDEPENDENT ENZYMES. NEVINSKY G.A., VINOGRADOVA N.L., BUGREEV D.V., ISHENKO A.A., VASYUTINA E.L., ULYANOVA N.P., ZAKHAROVA O.D., KOLOCHEVA T.A.
UMRANIA Y.
CHARACTERIZATION OF THE COMPACT MODEL GENOME OF THE JAPANESE PUFFER FISH (FUGU RUBRIPES) USING A COSMID SEQUENCE SCANNING APPROACH. ELGAR G., CLARK M.S., EDWARDS Y.J.K., MEEK S., SMITH S., UMRANIA Y., WARNER S., WILLIAMS G., BISHOP M.J.
URMILA KULKARNI-KALE
USE OF BIOINFORMATICS IN DEVELOPMENT OF PEPTIDE VACCINE. KOLASKAR A.S., URMILA KULKARNI-KALE, GORE M.M.
UVAROV D.L.
INVARIANT SECONDARY STRUCTURE OF ALU REPEATS PREDETERMINES CLUSTERIZATION OF REGULATORY ELEMENTS IN HUMAN GENOME. BLINOV V.M., UVAROV D.L., RESENCHUK S.M., CHIRIKOVA G.B., KISSELEV L.L.
V
VALUEV V.P.
ACTIVITY: A DATABASE FOR ACTIVITIES OF FUNCTIONAL DNA/RNA SITES. PONOMARENKO J.V., FURMAN D.P., MISHCHENKO T.M., KATOKHINA L.V., VALUEV V.P., PEREGOEDOVA E.L., FROLOV A.S., PODKOLODNY N.L., PONOMARENKO M.P.
AUTOMATIC GENERATION OF RECOGNITION PROGRAMS FOR AMINO ACID SEQUENCES. VALUEV V.P., KUROPATOV D.A., PONOMARENKO M.P.
VAN HELDEN J.
ANALYSIS OF TRANSCRIPTIONAL FACTORS IN E. COLI. PEREZ-RUEDA E., VAN HELDEN J., WODAK S., COLLADO-VIDES J.
THE BASIC PRINCIPLES OF DNA RECOGNITION BY SEQUENCE DEPENDENT AND INDEPENDENT ENZYMES. NEVINSKY G.A., VINOGRADOVA N.L., BUGREEV D.V., ISHENKO A.A., VASYUTINA E.L., ULYANOVA N.P., ZAKHAROVA O.D., KOLOCHEVA T.A.
INTERPRETATION OF X-RAY ANALYSIS DATA OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE HUMAN DNA TOPOISOMERASE I ON THE BASIS OF THE ENZYME. BUGREEV D.V., VASYUTINA E.L., BUNEVA V.N., NEVINSKY G.A.
VERBITSKII D.S.
THE SEQUENCING AND MOLECULAR ANALYSIS OF COXI GENE FRAGMENTS OF WILD PERENNIAL CROP ELYMUS SIBIRICUS L.. FALSHINA I.V., VERBITSKII D.S., ROGOZIN I.B., KONSTANTINOV Yu.M., TAUSON E.L.
THE BASIC PRINCIPLES OF DNA RECOGNITION BY SEQUENCE DEPENDENT AND INDEPENDENT ENZYMES. NEVINSKY G.A., VINOGRADOVA N.L., BUGREEV D.V., ISHENKO A.A., VASYUTINA E.L., ULYANOVA N.P., ZAKHAROVA O.D., KOLOCHEVA T.A.
VISHNEVSKY O.V.
SEARCH FOR DEGENERATE OLIGONUCLEOTIDE MOTIFS IN TRANSCRIPTION FACTOR BINDING SITES AND EUKARYOTIC PROMOTERS (THE SYSTEM ARGO). VISHNEVSKY O.V., PODKOLODNAYA O.A., BABENKO V.N.
VITRESCHAK A.
CONSERVED RNA STRUCTURES REGULATE INITIATION OF TRANLSATION OF ESCERICHIA COLI AND HAEMOPHILUS INFLUENZAE RIBOSOMAL PROTEIN OPERONS. VITRESCHAK A., BANSAL A.K., GELFAND M.S.
RECONSTRUCTION OF THE GENOFOND PECULIARITIES OF THE ANCIENT PAZYRYK POPULATION (I-II MILLENIUM BC) FROM GORNY ALTAI ACCORDING TO THE MTDNA STRUCTURE. VOEVODA M.I., SITNIKOVA V.V., ROMASHCHENKO A.G., CHIKISHEVA T.A., POLOS’MAK N.V., MOLODIN V.I.
VOROBIEV D.G.
SAMPLES AND ALIGNED: DATABASES FOR FUNCTIONAL SITE SEQUENCES. VOROBIEV D.G., PONOMARENKO J.V., PODKOLODNAYA O.A.
B-DNA-VIDEO: AN ACTIVE DATABASE FOR THE SIGNIFICANT B-DNA FEATURES OF TRANSCRIPTION FACTOR BINDING SITES. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., VOROBIEV D.G., LEVITSKY V.G., PODKOLODNAYA O.A., OVERTON G.C., KOLCHANOV N.A.
A SYSTEM FOR ACTIVATION OF THE TRRD DATABASE: FURTHER DEVELOPMENT OF GENEEXPRESS. FROLOV A.S., LAVRYUSHEV S.V., VOROBIEV D.G., GRIGOROVICH D.A.
RECOGNITION ACCURACY OF DNA FUNCTIONAL SITES CAN BE INCREASED BY AVERAGING PARTIAL RECOGNITIONS. PONOMARENKO M.P., FROLOV A.S., PONOMARENKO J.V., PODKOLODNAYA O.A., VOROBIEV D.G., KOLCHANOV N.A., OVERTON G.C.
REVEALING THE CONFORMATIONAL AND PHYSICO-CHEMICAL DNA PROPERTIES APPLICABLE FOR PREDICTING THE ACTIVITY OF DNA FUNCTIONAL SITES. PONOMARENKO M.P., KOLCHANOV N.A., PONOMARENKO J.V., FROLOV A.S., PODKOLODNAYA O.A., VOROBIEV D.G., PODKOLODNY N.L., OVERTON G.C.
EUKARYOTIC MRNAS ENCODING ABUNDANT AND SCARCE PROTEINS ARE DISSIMILAR IN MANY STRUCTURAL FEATURES OF 5’-UNTRANSLATED LEADERS. KOCHETOV A.V., PONOMARENKO M.P., VOROBIEV D.G., FROLOV A.S., KISSELEV L.L., KOLCHANOV N.A.
THE STRUCTURAL ANALYSIS OF THE DNA FRAGMENTS ASSOCIATED WITH THE NUCLEAR LAMINS IN DROSOPHILA MELANOGASTER. LIKHACHEVA E., PONOMARENKO M.P., BOGACHEV S., KOKOZA E., FISHER P., PONOMARENKO J.V., VOROBIEV D.G., KOLESOV G.B., KOLCHANOV N.A.
SIGNIFICANT B-DNA CONFORMATIONAL AND PHYSICO-CHEMICAL PROPERTIES OF THE DNA TOPOISOMERASE I SITES. PONOMARENKO M.P., VOROBIEV D.G., PONOMARENKO J.V., KUZIN F.E., GRUZDEV A.D., KOLCHANOV N.A.
VTYURIN N.
PROTEIN 3D ALIGNMENT SOFTWARE FOR INTEL COMPUTERS. VTYURIN N., BATURIN V., GULIN V., GORYACHEV N.
VYSOTSKII V.I.
SOME PECULIARITIES OF LONG-RANGE INTERACTION BETWEEN NUCLEOTIDES IN THE INTRACELLULAR LIQUIDS. PINCHUK A.O., VYSOTSKII V.I.
W
WARNER S.
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