Poster presentations and Computer demonstrations

Participants are welcome to put up their posters on August, 7, in the morning.

All questions about Poster presentation should be addressed to Yury Orlov, room № 200.

The questions concerning Computer Demonstrations should be addressed
to Dmitry Grigorovich, room № 200.

The Participants of the Poster Session N 1 are kindly requested
to expose their posters during the registration on August, 7
and to remove them on August, 8, in the evening.
The Participants of the Poster Session N 2 are kindly requested
to expose their posters on August, 9, in the morning and to remove them on August, 11,
after the Closing of the Conference.
The durable poster’s demonstration will enable the participants
of the Conference to study the posters in more details.

August , 7, Monday

17:55-19:30

1st Poster Session and Computer Demonstration

“Analysis of regulatory DNA sequences. Structural genomics”

N Title

Authors

Issue vol., page
P 1 Transcription Regulatory Regions Database (TRRD)

E.A. Ananko, O.A. Podkolodnaya, E.V. Ignatieva, O.V. Kel-Margoulis, A.E. Kel, T.I. Merkulova, I.L. Stepanenko,
T.N. Goryachkovskaya, N.L. Podkolodny, D.A. Grigorovich,
A.N. Naumochkin, I.M. Korostishevskaya, I.V. Lokhova,
A.G. Romashchenko, N.A. Kolchanov

I, 18
P 2 Blockwise evolution of hemostasis and complement functional systems

G.G. Ananko

II, 179
P 3 Databases on endocrine system gene expression regulation: informational content and computer analysis

E.V. Ignatieva, T.V. Busygina, Е.А. Ananko, О.А. Podkolodnaya, T.I. Merkulova, V.V. Suslov, М.A. Pozdnyakov

I, 22
P 4 Steroidogenesis-controlling gene transcription regulation: representation in TRRD database

T.V. Busygina, E.V. Ignatieva, A.V. Osadchuk

I, 41
P 5 Knowledge base on molecular-genetical foundations of lipid metabolism regulation: current state and perspective

E.V. Ignatieva, V.A. Likhoshvai, A.V. Ratushny, P.S. Kosarev

I, 54
P 6 Contextual features of yeast mRNA 5’UTRs potentially important for their translational activity

A.V. Kochetov, D.G. Vorobiev, O.A. Sirnik, L.L. Kisselev,
N.A. Kolchanov

I, 67
P 7 Compositional properties of plant mRNA 5’untranslated regions: the presence of enhancer-like motifs

A.V. Kochetov, G.V. Glazko, O.A. Sirnik, I.B. Rogozin,
E.A. Trifonova, M.L. Komarova, V.K. Shumny

I, 71
P 8 Translational features of 5’UTR-located miniORFs

A.V. Kochetov, , O.A. Sirnik, M.L. Komarova, E.A. Trifonova,
N.A. Kolchanov, V.K. Shumny

I, 74
P 9 TRRDEXTR: computer program for extraction of regulatory sequences described in TRRD

P.S. Kosarev

I, 81
P10 Characteristic modular promoter structure and its application to development of recognition program software

V.G. Levitsky, A.V. Katokhin

I, 86
P11 Nucleosome organization of chromatin in eukaryotic genes and structure-functional genome regions

V.G. Levitsky, N.A. Kolchanov

I, 90
P12 Analysis of relationships between nucleosome positioning in promoter regions and gene expression pattern

V.G. Levitsky, О.А. Podkolodnaya

I, 94
P13 Analysis of context dependencies within regulatory gene regions in eukaryotes

Yu.L. Orlov, P.S. Kosarev, N.G. Orlova, V.N. Potapov

I, 115
P14 Nucleosome code analysis by estimating Markov dependencies

Yu.L. Orlov, V.G. Levitsky.

I, 153
P15 Context dependencies in amino acid sequencies of protein domains

Yu. L. Orlov, V.A. Ivanisenko, V.N. Potapov

II, 227
P16 Correlation analysis of DNA conformational characteristics of human topoisomerase I cleavage sites

D.Yu. Oshchepkov, F.E. Kuzin, D.A. Afonnikov

I, 157
P17 Correlation analysis of HSF binding sites conformational properties

D.Yu. Oshchepkov, I.L. Stepanenko, D.A. Afonnikov,
H.C. Schroeder

I, 161
P18 Integrated system on gene expression regulation GeneExpress – 2000

N.А. Kolchanov, N.L. Podkolodny, M.P. Ponomarenko,
E.A. Ananko, E.V. Ignatieva, F.А. Kolpakov, V.G. Levitsky,
O.A. Podkolodnaya, I.L. Stepanenko, T.I. Merkulova,
D.G. Vorobiev, S.V. Lavryushev, D.A. Grigorovich,
J.V. Ponomarenko, A.V. Kochetov, G.V Orlova. , Y.V. Kondrakhin, I.I. Titov, О.V. Vishnevsky, Yu.L. Orlov, V.P. Valuev,
V.A. Ivanisenko, D.Yu. Oschepkov, N.A. Omel’yanchuk,
M.A. Pozdnyakov, P.S. Kosarev, T. N. Goryachkovskaya,
O.N. Fokin, L.A. Kalinichenko, Yu.V. Kotlyarov

I, 12
P19 Locus control regions: description in a database

O.A. Podkolodnaya, V.G. Levitsky

I, 31
P20 Representation of information on erythroid gene expression regulation in the GeneExpress system

O.A. Podkolodnaya, I.L. Stepanenko, E.A. Ananko, D.G. Vorobiev

I, 34
P21 SELEX_DB: an activated database on DNA/RNA sequences obtained in SELEX-experiments

J.V. Ponomarenko, G.V. Orlova, M.P. Ponomarenko,
S.V. Lavryushev, S.V. Zybova, A.S. Frolov

I, 37
P22 ACTIVITY: a database on DNA regulatory sites activity, adapted for analysis of DNA-protein interactions

J.V. Ponomarenko, D.P. Furman, M.P. Ponomarenko,
G.V. Orlova, А.S. Frolov, N.L. Podkolodny, A. Sarai

I, 58
P23 Common B-DNA features of a definite transcription factor binding sites superclass

J.V. Ponomarenko, M.P. Ponomarenko

I, 98
P24 Conformation of TATA-promoters В-helix may govern diffusion of TBP along DNA towards -30 position of these promoters

J.V. Ponomarenko, M.P. Pomonarenko, I.L. Zvolsky

I, 102
P25 B-DNA features correlating with point mutations that influence DNA/protein-binding free energy

M.P. Ponomarenko, J.V. Ponomarenko, T.N. Goryachkovskaya, G.V. Orlova, A. Sarai

I, 111
P26 Analysis of the region of intron 6 of the human TDO2 gene in that point mutations associated with psychiatric disorders are located with the aid of computer and experimental approaches

T.I. Merkulova, G.V. Vasiliev, M.P. Ponomarenko, V.F. Kobzev, O.A. Podkolodnaya, Yu.V. Ponomarenko, N.A. Kolchanov

I, 134
P27 Single nucleotide polymorphism in the region of 288-296 bp of intron 2 of the K-ras gene, related to lung tumor susceptibility, causes alteration in the set of proteins binding to this region

Z.B. Levashova, V.I. Kaledin, M.P. Ponomarenko, V.F. Kobzev, G.V. Vasiliev, J.V. Ponomarenko, O.A. Podkolodnaya,
T.I. Merkulova, N.A. Kolchanov

I, 164
P28 Method for prediction of transcription factor binding to regulatory region, based on caused by point mutation alterations in the pattern of this region interaction with nuclear proteins

M.P. Ponomarenko, T.I. Merkulova, Yu.V. Pomonarenko,
G.V. Orlova

III, 65
P29 rSNP_Guide: a database documenting influence of substitutions in regulatory gene regions onto their interaction with nuclear proteins and predicting protein binding sites, damaged or appeared de novo due to these substitutions

J.V. Ponomarenko, G.V. Orlova, M.P. Ponomarenko,
S.V. Lavryushev, T.I. Merkulova

III, 69
P30 Method of functional sites classification based on oligonucleotide frequencies

E.A. Nedosekina, M.A. Pozdnyakov

III, 103
P31 Detecting patterns of structure-function organization of regulatory genomic sequences in a first order logic

E.E. Vityaev, N.L. Podkolodny, O.V. Vishnevsky, P.S. Kosarev, E.A. Ananko, E.V. Ignatieva, O.A. Podkolodnaya, N.A. Kolchanov

I, 150
P32 CRASP: software package for analysis of physicochemical parameters of aligned sequences of protein families

D.A. Afonnikov

II, 153
P33 Novel functional features of DNA-binding domain of the “homeodomain” class revealed by analysis of correlations of amino acid substitutions in its positions

D.A. Afonnikov

II, 157
P34 Stability of partial correlation coefficient estimates for residue characteristics at different positions of amino acid sequences

D.A. Afonnikov

II, 223
P35 Structure and format of the EnPDB database accumulating spatial structures of DNA, RNA and proteins

D.A. Grigorovich, V.A. Ivanisenko, N.A. Kolchanov

II, 125
P36 PDBSite: a database on biologically active sites and their spatial surroundings in proteins with known tertiary structure

V.A. Ivanisenko, D.A. Grigorovich, N.A. Kolchanov

II, 183
P37 Model of PCR kinetics

I.I. Titov

II, 128
P38 Structural features of mRNA 5’UTRS of eukaryotic genes expressed at high and low levels

D.G. Vorobiev, I.I. Titov, A.V. Kochetov, N.A. Kolchanov

II, 142
P39 Mass analysis of RNA secondary structures using a genetic algorithm

I.I. Titov, D.G. Vorobiev, N.A. Kolchanov

II, 146
P40 The database ASPD on experiments with application of phage display technique

V. P. Valuev, D.A. Afonnikov, O. Petrenko, A.G. Beylina, I.V. Lokhova, D.A. Grigorovich, O.N. Fokin, V.A. Ivanisenko

II, 171
P41 3-dimensional protein structural class recognition

V.P. Valuev

II, 176
P42 Information system ‘HIV vaccine development’

O.E. Belova, S.I. Bazhan

II, 131
P43 Database of patterns PROF_PAT, used to detect local similarities

A.G. Bachinsky, D.A. Grigorovich, A.N. Naumochkin,
L.Ph. Nizolenko, A.A. Yarigin

II, 195
P44 The search of regions in HIV-1 proteins that have local similarities with human proteins

S.I. Bazhan, A.G. Bachinsky, A.Z. Maksyutov

II, 202
P45 L-ZIP motif as a probable dimerization motif of LTB4 receptor

V.A. Lukashev, V.V. Lukashova, M. Rola-Pleszczynski,
J. Stankova

II, 205
P46 Investigation of the amino acid sequences of mycobacterium tuberculosis complete genome with protein family patterns bank PROF_PAT 1.3

L.Ph. Nizolenko, E.M. Kozhina, A.A. Yarigin, A.G. Bachinsky

II, 208
P47 Theoretical model of interaction: Platelete Activating Factor Receptor (PAFR) and tyrosine kinase Tyk2

V.V. Lukashova, V.A. Lukashev, V.V. Lukashev,
M. Rola-Pleszczynski, J. Stankova

II, 219
P48 Hierarchical feature decomposition in functional domains

D. Murray, B.H. Honig, A. Califano

II, 232
P49 RNA-polymerase – promoter recognition. specific features of electrostatic potential of “early” T4 phage DNA promoters

T.R. Dzhelyadin, A.A. Sorokin, N.N. Ivanova, V.S. Sivozhelezov, S.G. Kamzolova, R.V. Polozov

II, 134
P50 Estimation of the entropy change upon H-bond formation in proteins

A.B. Rakhmaninova, A.A. Mironov

II, 199
P51 ASDB: database of alternative splicing

I. Dralyuk, M. Brudno, M.S. Gelfand, M. Zorn, I. Dubchak

I, 26
P52 CYCLE-TRRD: a database on transcriptional regulation of cell cycle-dependent genes

O.V. Kel-Margoulis, A.E. Kel

I, 28
P53 Kernel method for estimation of functional site local consensi. Classification of transcription initiation sites in eukaryotic genes

Y. Tikunov, A. Kel

I, 130
P54 Periodic patterns in the primary structure of E.coli promoters

G. I. Kravatskaya, G.K. Frank, V.Ju. Makeev, N.G. Esipova

III, 111
P55 Associated with repeated elements structural deformation of promoter DNA upon transcription complex formation

I.S. Masulis, V.V. Chasov, O.N. Ozoline

I, 78
P56 A/T-traces in the initially transcribed regions of bacterial promoters. putative functional significanCE

V.V. Chasov, I.S. Masulis, O.N. Ozoline

I, 145
P57 An approach to structural alignment with genetic algorithm

S.-J. Park, M. Yamamura

II, 216
P58 Recognition groups: a new method for description and prediction of transcription factor binding sites

Yu.V. Kondrakhin, L. Milanesi, S.V. Lavryushev, J. Schug,
N.A. Kolchanov

I, 62
P59 The module organization of the A and B boxes in the tRNA intragenic promoter

I.B. Rogozin, Yu.V. Kondrakhin, T.M. Naykova, N.S. Yudin,
M.I. Voevoda, A.G. Romaschenko

I, 106
P60 Construction of the module structure model of the regulatory site on the base of the multiple relationships between site positions

Yu.V. Kondrakhin, I.B. Rogozin, A.G. Romashchenko

I, 147
P61 Structure-based target prediction of transcription factors

A. Sarai, S. Selvaraj, P. Prabakaran, H. Kono

II, 138
P62 Analysis of structural motifs in proteins

A.N. Jianghong, H. Wako, A. Sarai

II, 161
P63 Design and implementation of thermodynamic database for protein-nucleic acid interactions

P. Prabakaran, J. An, M.M. Gromiha, S. Selvaraj, H. Uedaira,
H. Kono, A. Sarai

II, 166
P64 Regions of potential interactions in RNA molecules as found by computer search

S.A. Shabalina

II, 140
P65 Computer analysis reveals a set of additional promoter elements upstream of maize plastid genes

I.A. Shahmuradov, Y.Yu. Akberova, N.Sh. Mustafayev,
A.U. Abdulazimova, J.A. Aliyev

I, 142
P66 Effect of human non-synonymous single nucleotide polymorphisms upon a protein structure

S. Sunyaev, V. Ramensky, P. Bork

II, 211
P67 Analysis of hepatitis C virus proteins using sequence and published data

B.N. Sobolev, V.V. Poroikov, I.V. Matveev, L.V. Olenina,
E.F. Kolesanova, A.I. Archakov

II, 213

August , 7, Monday

18:00-19:30

INTAS Poster Session

N Title

Authors

Issue vol., page
P68 Computational biochemistry of hepatocyte

O.V. Demin, B.N. Kholodenko, G.Yu. Riznichenko, G. Lebedeva

III, 73
P69 Behavioral analysis of homeotic lawc-mutants in D. melanogaster

O. Simonova, T. Sukhoverkhova, E. Modestova, L. Korochkin

III, 49
P70 Age-associated changes in 8-oxoguanine- and hypoxanthine-DNA-glycosylase activities of cell’s extracts of Wistar and of rats with inherited overgeneration of free radicals

A.A. Ishchenko, O.I. Sinitsyna, E.A. Vasunina, J.S. Krysanova, G.A. Nevinsky

III, 40
P71 Complex formation of Fpg protein with oligonucleotides and their derivatives

A.A. Ishchenko, G.A. Nevinsky

III, 50
P72 Heat shock knowledge base

I.L. Stepanenko, V.G. Levitsky, H.C. Schroeder

III, 59
P73 Model of phosphate high-affinity transport in bacteria

I.I. Titov, N.A. Kolchanov, H.C. Schroder

III, 62
P74 Regulation of mdr1 gene expression by ds–oligonucleotides

N.V. Shatskaya, L.N. Bozhenok, E.L. Chernolovskaya,
V.V. Vlassov

III, 12
P75 Identification of Optimal Target Sites for Antisense Oligonucleotides in the a-sarcin Loop Region of E. coli 23S rRNA

V.A. Petyuk, M.A. Zenkova, V.V. Vlassov

III, 16
P76 Artificial Ribonucleases: novel tools for investigation of RNA structure in solution

M.A. Zenkova, D.A. Konevetz, N.G. Beloglazova,
N.A. Chumakova, V.V. Vlassov, V.N. Sil’nikov

III, 31
P77 Binding of oligonucleotides with glyceraldehyde-3-phosphate dehydrogenase interferes with cellular functions of the enzyme

A.V. Bryksin, P.P. Laktionov, N.V. Volod’ko, C. Griffoni,
E.Y. Rykova, E. Spisni, R. Kraft, V. Tomasi, V.V. Vlassov

III, 34
P78 Bispyrenylated oligonucleotide probes displaying hybridizaion induced excimer fluorescence

E.V. Kostenko, M.I. Dobrikov, N.I. Komarova, V.V. Vlassov,
M.A. Zenkova

III, 43
P79 Chemical cleavage of plasmid DNA by arenes in the presence of CU(II) Ions

O.A. Koval, S.B. Oleinikova, E.L. Chernolovskaya, V.V. Litvak, V.V. Vlassov

III, 46
P80 Efficient site-directed cleavage of yeast tRNAPhe with oligonucleotides conjugated to imidazole constructs

N.G. Beloglazova, N.N. Polushin, V.N. Sil’nikov, M.A. Zenkova, V.V. Vlassov

III, 54
Demo New method for analysis of promoter sequenses by genetic algoritms

T. Ivanova

August, 9, Wednesday

14:30-16:30

2nd Poster Session and Computer Demonstration “Gene networks. Comparative and evolutionary genomics. Large scale genome analysis”

N Title

Authors

Issue vol., page
P 1 GeneNet database: a technology for a formalized description of gene networks

E.A. Ananko, F.A. Kolpakov, N.A. Kolchanov

I, 174
P 2 Gene network on plant interaction with pathogen organisms

T.N. Goryachkovsky, E.A. Ananko, F.A. Kolpakov

I, 188
P 3 Gene network on storage mobilization in seed

A.V. Axenovich, T.N. Goryachkovsky, E.A. Ananko,
N.A. Omelyanchuk, I.L. Stepanenko

I, 235
P 4 Seed maturation in higher plants: gene networks on ontogenesis in storage tissues

T.N. Goryachkovsky, E.A. Ananko, F.A. Kolpakov,
I.L. Stepanenko

I, 238
P 5 GeneNet-based model of two-stage aldosterone effect on principal cells of cortical collecting ducts

N.S. Logvinenko, E.V. Ignatieva, L.N. Ivanova

I, 181
P 6 Informational support of ontology for transcription regulation (ISOTR)

E.V. Ignatieva, N.L. Podkolodny, N.A. Kolchanov

III, 99
P 7 Drosophila Promoter Database EnDPD: Project and the first steps of its realization

A.V. Katokhin, V.G. Levitsky

III, 105
P 8 Latent phenotype as an adaptation reserve: a simplest model of cell evolution

V.A. Likhoshvai, Yu.G. Matushkin

I, 195
P 9 Mathematical model of cholesterol biosynthesis regulation in the cell

A.V. Ratushny, E.V. Ignatieva, Yu.G. Matushkin, V.A. Likhoshvai

I, 199
P10 Mathematical model of erythroid cell differentiation regulation

A.V. Ratushny, O.A. Podkolodnaya, E.A. Ananko,
V.A. Likhoshvai

I, 203
P11 Numerical study of mathematical models described dynamics of gene nets functioning: software package STEP

A.Yu. Berezin, L.A. Gainova, Yu.G. Matushkin , V.A. Likhoshvai, S.I. Fadeev

I, 243
P12 On relationships between gene expression efficiency and nucleotide content of the protein-coding sequences

V.A. Likhoshvai, Yu.G. Matushkin

II, 69
P13 Determining markov model of genetical texts by stochastic complexity estimation

Yu.L. Orlov, V.N. Potapov

II, 73
P14 Education on the basis of the GeneExpress system: business game “Regulatory signals”

M.P. Ponomarenko, J.V. Ponomarenko, S.V. Lavryushev,
D.G. Vorobiev, A.V. Minina, S.A. Ivashin, Yu.I. Mikhailov

II, 240
P15 Molecular modelling of disease-causing single-nucleotide polymorphisms in collagen

Ju.V Milchevsky, V.E Ramensky, B.S. Zorov, N.G. Esipova, V.G.Tumanyan

III, 114
P16 Elucidation of the structure of whole protein: human collagen iii

Ju.V. Milchevsky, B.S. Zorov, N.G.Esipova, V.G. Tumanyan

III, 114
P17 Software automated package for analyzing the dynamics of control gene networks

A.V. Galimzyanov, R.N.Tchuraev
P18 Development of knowledge base on plant gene expression regulation

I.L. Stepanenko, T.N. Goryachkovsky, S.S. Ibragimova,
A.V. Axenovich, N.A. Omelyanchuk, S.V. Lavryushev,
N.L. Podkolodny

I, 185
P19 Gene network of redox regulation and the problem of integrating local gene networks

I.L. Stepanenko, O.G. Smirnova, Yu.M. Konstantinov

I, 207
P20 Molecular-genetical mechanisms of thyroid system regulation: description in TRRD and GeneNet databases

V.V. Suslov, E.V. Ignatieva, А.V. Osadchuk

III, 80
P21 Bioinformatics: novel profile of vocational education

A.I. Valishev, N.A. Kolchanov, N.L. Podkolodny, V.N. Melnikov, L.G. Alsynbayeva, R.G. Yaroslavtseva, W.J.A. Haans

II, 249
P22 Course “Introduction to bioinformatics”

V.P. Valuev, D.A. Afonnikov

II, 246
P23 Reconstruction of the open reading frames by using EST multiple alignment and dynamic programming

O.V. Vishnevsky, A.V. Katokhin, V.N. Babenko

II, 65
P24 Evolutionary dynamics of low complexity DNA sequences in coding and non coding regions

C. Acquisti, G. Mersi, M. Buiatti, P. Bogani

III, 109
P25 Mouse aquaporin 4 gene: prediction of a new exon and experimental confirmation.

A.A. Bondar, T.Yu. Alikina, S.M. Zelenin

II, 49
P26 Automated comparative analysis of regulatory patterns: sugar metabolism and transport systems in gamma purple bacteria

A.A. Mironov, M.S. Gelfand

II, 12
P27 Pro-Frame: similarity-based gene recognition in eukaryotic DNA sequences with errors

A.A. Mironov, M.S. Gelfand

II, 14
P28 GenomeExplorer: software for analysis of complete bacterial genomes

A.A. Mironov, N.P. Vinokurova, M.S. Gelfand

II, 17
P29 Comparative approach to analysis of regulation in complete genomes: catabolite repression in gamma-proteobacteria

E.S. Novichkova, P.S. Novichkov, A.A. Mironov, M.S. Gelfand

II, 19
P30 Comparative approach to analysis of regulation in complete genomes: SOS repair in Bacillus subtilis

E.A. Permina, A.A. Mironov, M.S. Gelfand

II, 23
P31 HrcA regulates not only chaperonin genes

M.S. Gelfand, A.A. Mironov

II, 25
P32 Software for orthology analysis in complete bacterial genomes

M.V. Baitalyuk, P.S. Novichkov, M.S. Gelfand, A.A. Mironov

II, 27
P33 Comparative approach to analysis of regulation in complete genomes: transcription regulatory sites in Archaea

M.S. Gelfand, E.V. Koonin, A.A. Mironov

II, 34
P34 Pro-Gen: Prediction of the exon-intron structure by comparison of genomic sequences

P.S. Novichkov, M.S. Gelfand, A.A. Mironov

II, 45
P35 Comparative approach to analysis of regulation in complete genomes: multidrug resistance systems in gamma-proteobacteria

D.A. Rodionov, M.S. Gelfand, A.A. Mironov, A.B. Rakhmaninova

II, 52
P36 Regulation of DAHP-synthases in gamma-proteobacteria: feedback inhibition and repression of transcription

E.M. Panina, A.A. Mironov, M.S. Gelfand

II, 54
P37 Comparative approach to analysis of regulation in complete genomes: attenuators of aromatic amino acid operons of gamma-proteobacteria

A.G. Vitreschak, M.S. Gelfand

II, 58
P38 Avoidance of palindromes in proCaryotic genomes and restriction-modification systems

E.M. Panina, M.S. Gelfand

II, 60
P39 Evolution of plant regulatory sequences

U. Goebel, T. Wiehe, T. Mitchell-Olds

II, 119
P40 Simulation of Metabolic Networks based on the integration of Molecular Database Systems

A. Freier, M. Lange, R. Hofestaedt, U. Scholz, A. Stephanik
P41 MD-Cave – the metabolic diseases database a system for storing information about human inborn errors

A. Freier, R. Hofestadt, M. Lange, U. Scholz, T. Topel

I, 66
P42 Modeling of cell cycle gene regulatory network. A role of a positive feedback loop implying potential E2F target sites in the regulatory regions of AP-1 genes

I.V. Deineko, O.V. Kel-Margoulis, V.A. Ratner, A.E. Kel

I, 226
P43 The integrated TRANSFAC system as a basis for modeling and simulation of gene regulation mechanisms

A. Potapov, M. Christensen, V. Drewes, F. Schacherer,
E. Wingender

I, 230
P44 Studying correlations of computationally predicted origins of replication and base skews in the Saccharomyces cerevisiae genome

J.O. Korbel, H. Assmus, H. Herzel Sz.M.Kielbasa

II, 98
P45 Mono- and bivariate fluorimetric flow sorting of human chromosomes: quantitative data analysis

Kravatsky Yu.V. , Poletaev A.I.

II, 237
P46 Fast search of all tandem repetitions in nucleotide sequences

M. Giraud, R. Kolpakov, G. Kucherov

II, 64
P47 No mystery of ORFans in genomics – generation of ORFans in the antisense of coding sequences

P. Mackiewicz, M. Kowalczuk, A. Gierlik, D. Szczepanik,
A. Nowicka, M.R. Dudek, S. Cebrat

II, 41
P48 PUMA/WIT – a family of integrated systems for genetic sequence analysis and metabolic reconstructions

R. Overbeek, E. Selkov, G. Pusch, M. D’Souza, N. Maltsev

I, 192
P49 Comparative analysis of functional site motifs of MGE copia-group relative to their possible molecular functions

V.G. Amikishiev, V.A. Ratner

II, 90
P50 Patterns of mobile genetic elements (MGEs) genomic localization: induction of transpositions by stress factors, response to selection and possible evolutionary consequences

V.A. Ratner, L.A. Vasilyeva, E.V. Bubenshchikova,
O.V. Antonenko

II, 114
P51 The reconstruction of the Drosophila segmentation mechanisms from experimental data: processing and analysis of confocal images of expression patterns

A.V. Spirov, D.L. Timakin, J. Reinitz, D. Kosman, O.A. Spirova

I, 246
P52 Method for spatial registration of the expression patterns of Drosophila segmentation genes using wavelets

K. N. Kozlov, E. M. Myasnikova, M. G. Samsonova, J. Reinitz, D. Kosman

III, 79
P53 S/MARs and some elements from different repetitive families are colocalized in human genome

G.V. Glazko, A.V. Kochetov, I.B. Rogozin

II, 94
P54 The molecular analysis of mitochondrial genome structure of wild perennial crop Elymus sibiricus: evolutionary conservation and variation of coxI, coxIII, atpA, rps13 genes

E.L. Tauson, I.B. Rogozin, D.S. Verbitski, Yu.M. Konstantinov, A.Sh. Arziev, S.I. Bashalkhanov

III, 37
P55 Two strategies of the second messengers of physiological regulators in maintenance of endothelial-smooth muscle cell balance

V.I. Fedorov
P56 A System for Philogenetic footprint of promoters

E.S. Cheremushkin
P57 Mink enteritis virus VP2 gene fragments analysis

S.E. Tkachev

II, 251
P58 Interaction of human milk lactoferrin with DNA in context of it’s polyfunctional biological functions

T.G. Kanyshkova, S.E. Babina, A.V. Gal’vita, G.A. Nevinsky

III, 75
P59 Comparison of milk protein kinase with secretory immunoglobulin A possessing protein kinase activity

A.M. Akimzhanov, D.V. Semenov, G.A. Nevinsky

III, 85
P60 Unexpected high affinity of some very short nonspecific oligonucleotides for human DNA topoisomerase I

D.V. Bugreev, G.A. Nevinsky

III, 88
P61 Effect of DNA-hydrolyzing antibodies on cell division and immunoresponse of experimental mice

A.V. Gal’vita, T.G. Kanyshkova, N. V. Isaeva, D.I. Polosukhina, G.A. Nevinsky

III, 92
P62 Physico-chemical characteristics of the formation of RecA-DNA nucleofilament

I.P. Bugreeva, D. V. Bugreev, O.I. Sinitsyna, G. A. Nevinsky

III, 95
P63 Genome alignments and gene recognition

S.Petrova, M.Roytberg
P64 Structure alignment and sequence alignment

G. Bogopolsky, N. Oleinikova, P.Vlasov, Sh. Sunyau, M.Roytberg
P65 Towards a structural basis of human non-synonymous single nucleotide polymorphisms

V.E. Ramensky, V.Ju. Makeev, M.A. Roitberg, V.G Tumanyan
Demo A new version of SYNAP computer program for logical modeling of phylogeny

K.S. Baikov, A.A.Zverev

II, 121
Demo A database of genetic texts with latent periodicity (LPD)

M.B. Chaley, E.V. Korotkov

II, 105
Demo The TRANSFAC system on gene regulation

H. Karas
Demo Software automated package for analyzing the dynamics of control gene networks

A.V. Galimzyanov