Poster presentations and computer demonstrations

Ananko E.A.,. Oshchepkov D. Yu, Levitsky V.G., Pozdnyakov M.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

ANALYSIS OF THE REGULATORY REGIONS OF GENES INVOLVED IN THE IMMUNE SYSTEM OPERATION

Cheremushkin E., ^1,2 Kel A.

1 Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2 BIOBASE GmbH, Wolfenbuettel, Germany

PHILOGENETIC FOOTPRINT. A NEW METHOD FOR PROMOTER ALIGNMENT

Cheremushkin E.S., ^1,2 Kel A.E., ³Lobiv I.V., ³Murzin F.A., ³Polovinko O.N.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2BIOBASE GmbH, Wolfenbuettel, Germany

3Institute of Informatics Systems SB RAS, Novosibirsk, Russia

VISUALIZATION OF DNA SEQUENCES BY COLOR CUBE TRANSFORMATION

Dzhelyadin T.R. Institute of Cell Biophysics of RAS, Pushchino, Moscow reg., Russia

SIMPLE METHOD FOR CALCULATION OF ELECTROSTATIC POTENTIAL DISTRIBUTION OF DNA

Favorov A.V., Gelfand M.S., Mironov A.A., Makeev V.J.

State Scientific Centre “GosNIIGenetica”, Moscow, Russia

YET ANOTHER DIGGING FOR DNA MOTIFS GIBBS SAMPLER

Furman D.P., Katokhin A.V., Oshchepkov D.Yu., Stepanenko I.L.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

DO DROSOPHILA RETROTRANSPOSON LTRs CONTAIN FUNCTIONAL SITES CAPABLE OF PROVIDING HEAT SHOCK-INDUCIBLE TRANSCRIPTION?

Ananko E.A., Grigorovich D.A., Podkolodny N.L., Ignatieva E.V., Podkolodnaya O.A., Korostishevskaya I.M.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

THESAURUS AS A TOOL FOR SEARCHING TRRD DATABASE

Kazakov A. E., Vassieva O., Gelfand M. S., Osterman A., Overbeek R.

Integrated Genomics inc., Moscow, Russia

BIOINFORMATICS ANALYSIS OF PHOH FUNCTION AND REGULATION IN ACTINOBACTERIA

Kondrakhin Yu.V.,Yudin N.S., Rogozin I.B., Naykova T.M., Voevoda M.I., Romaschenko A.G.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

SPECIFIC STRUCTURAL FEATURES OF THE PROMOTERS IN THE EUKARYOTIC TRNA GENES OF DIFFERENT TYPES

Kravatskaya G.I., Esipova N.G. Engelhardt Institute of Molecular Biology RAS, Moscow, Russia GENERALIZED SPECTRAL PORTRAIT OF Escherichia coli-TYPE REPLICATION ORIGIN’S PRIMARY STRUCTURE

Levitskii V.G., Ignatieva E. V., Proskura A. L., Pozdnyakov M. A., Busygina T.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

RECOGNITION OF BINDING SITES OF THE TRANSCRIPTION FACTORS SREBP, PPAR, HNF4, COUP-TF, AND SF-1 BY A GENETIC ALGORITHM BASED ON ITERATIVE DISCRIMINANT ANALYSIS

Levitsky V.G., Katokhin A.V., Lavryushev S.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

RECOGNITION OF EUKARYOTIC PROMOTERS USING GENETIC ALGORITHM BASED ON ITERATIVE DISCRIMINANT ANALYSIS

Naykova T.M., Kondrakhin Yu.V., Rogozin I.B., Voevoda M.I., Yudin N.S., Romaschenko A.G.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

STRUCTURAL REORGANIZATION RESULTING IN THE APPEARANCE OF INTRAGENIC PROMOTER SPECIFIC TO DIFFERENT TRNA GENE TYPES IN EUKARYOTES

Oshchepkov D. Yu., Turnaev I.I., Vityaev E.E.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

STUDY OF THE CONTEXT-DEPENDENT CONFORMATIONAL AND PHYSICOCHEMICAL PROPERTIES OF DNA FUNCTIONAL SITES

Pozdnyakov M.A., ²Vityaev E.E., ¹Ananko E.A. , ¹Busygina T.V, ¹Ignatieva E.V., ¹ Proskura A.L., ¹ Podkolodnaya O.A., ³Podkolodny N.L. , ¹ Merkulova T.I., ¹Kolchanov N.A.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia

3Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia DETECTION OF THE CORE STRUCTURE OF TRANSCRIPTION FACTOR BINDING SITES

Proscura A.L., Levitsky V.G., Oshchepkov D.Yu., Pozdnyakov M.A.,Ignatieva E.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

EXPRESSION OF LIPID METABOLISM GENES: DESCRIPTION IN TRRD DATABASE AND COMPUTER-ASSISTED ANALYSIS

Sand O., ²Vu T. D., ¹Gilbert D.,¹Viksna J.

1 Bioinformatics Research Centre, Department of Computing Science, University of Glasgow, Glasgow, UK

2 Department of Computing, School of Informatics, City University. London, UK

ANALYSIS OF TOPOLOGICAL REPRESENTATIONS OF TRANSCRIPTIONAL REGULATORY REGIONS

Sorokin A. A. Institute of Cell Biophysics RAS, Pushchino, Russia

ELECTROSTATIC POTENTIAL OF DOUBLE HELIX AS A NEW PROMOTER DETERMINANT. CLASSIFICATION OF ESCHERICHIA COLI PROMOTER SEQUENCES

Stavrovskaya E.D., Mironov A.A..

State Scientific Center GosNIIGenetika Moscow, Russia. Integrated Genomics, Moscow, Russia

A GENETIC ALGORITHM FOR IDENTIFICATION OF REGULATORY SIGNALS

Tikunov Y., ^1,2Kel A.

1Institute of Cytology and Genetics SB RAN, Novosibirsk, Russia

2BIOBASE GmbH, Wolfenbüttel, Germany

KERNEL METHOD FOR IDENTIFICATION OF LOCAL PATTERNS IN UNALIGNED SETS OF FUNCTIONAL SITES

Turnaev I.I., Oshchepkov D.Yu., Podkolodnaya O.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

RECOGNITION OF E2F TRANSCRIPTION FACTOR BINDING SITES

Vinogradov D.V., Mironov A.A. Integrated Genomics, Moscow, Russia

SITEPROB: YET ANOTHER ALGORITHM TO FIND REGULATORY SIGNALS IN NUCLEOTIDE SEQUENCES

1Vishnevsky E.V., ¹Ananko E.A. , ¹Ignatieva E.V., ¹Podkolodnaya O.A., ¹Stepanenko I.L., ²Vityaev E.E. ¹Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia

ARGO_VIEWER: A SYSTEM FOR RECOGNITION AND ANALYSIS OF GENE REGULATORY ELEMENTS IN EUKARYOTES

Artamonova I.I., Gorodentseva T.N., Sverdlov E.D.

Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, RAS, Moscow, Russia

CLUSTERS OF LONG TERMINAL REPEATS OF HUMAN ENDOGENOUS RETROVIRUSES (K FAMILY)

Brunk B., ¹Crabtree J., ¹Diskin S., ¹Mazzarelli J., ¹Zigouras N., ² Alkalaeva E., ²Bogdanova V., ² Trifonoff V., ²Vorobjeva N., ²Katokhin A., ²Kolchanov N., ¹ Stoeckert C.

1 Computational Biology and Informatics Laboratory, Center for Bioinformatics, University of Pennsylvania, Philadelphia

2 Institute of Cytology and Genetics Genetics Siberian Branch of the Russian Academy of Sciences, Novosibirsk, Russia

MANUAL ANNOTATION OF THE HUMAN AND MOUSE GENE INDEX: www.allgenes.org

Chaley M.B, ¹Korotkov E.V., ²Kudryashov N.A.

1Center “Bioengineering” RAS, Moscow, Russia

2Moscow Physical Engineering Institute, Moscow, Russia

A CHARACTERISTIC TYPE OF LATENT PERIODICITY OF 21 BPS FOUNDED IN BACTERIAL GENES OF THE TRANSMEMBRANE CHEMORECEPTORS (MCP II).

Ermagambetov A.M., ²Ivashchenko T.A., ¹Ivashchenko A.T., ¹Gabdulina Zh., ¹Goncharova A.V., ¹Karpenjuk T.A.

1al-Farabi Kazakh National University, Almaty, Kazakhstan

2 M A. Ajtkhozhin Institute of Molecular Biology and Biochemistry, Almaty, Kazakhstan

SYNONYMOUS CODON USAGE PECULIARITIES IN ESCHERICHIA COLI PROTEIN-CODING GENES AND NUCLEOTIDE FREQUENCY DISTRIBUTION IN HOMOLOGOUS GENES OF ATP-SYNTHASE

Ignatov A.N., ²Mischenko A.S., ²Yambartsev A., ³Shimkevich A.V., ³Goloenko I.M., ¹Dorokhov D.B., ³Davydenko O.V.

1Centre «Bioengineering» RAS, Moscow, Russia

2Moscow State University, Russia

3Institute of Genetics and Cytology, NAS of Belarus, Minsk, Belarus

DISTRIBUTION OF SHORT INVERTED REPEATS FLANKED DNA FRAGMENTS IN CEREALS MITOCHONRION GENOMES AND THEIR APPLICATION FOR PCR-FINGERPRINTING

Kabanov A.V., Komarov V.M., Yakushevich L.V., ¹Teplukhin A.V.

Institute of Cell Biophysics RAS, Pushchino, Russia

1Institute of Mathematical Problems of Biology RAS, Pushchino, Russia

ORIGIN OF LARGE PROPELLER DEFORMATIONS OF NUCLEOTIDE STEPS IN SHORT DNA DOUBLE HELIXES: QUANTUM-CHEMICAL MNDO/PM3 STUDY

Kalinichenko L.A., ¹Briukhov D.O., ¹Zakharov V.N ., ^2,3.Podkolodny N.L

1Institute for Problems of Informatics RAS, Moscow, Russia

2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

3Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia MEDIATION OF HETEROGENEOUS INFORMATION RESOURCES IN THE GENE EXPRESSION REGULATION DOMAIN

Katokhin A.V., Furman D.P., Levitsky V.G., Katokhina L.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

NUCLEOSOMAL ORGANIZATION OF DROSOPHILA RETROTRANSPOSON INSERTION SITES

Klimov E. A., Rakhmanaliev E. R.

N.I. Vavilov Institute of General Genetics, RAS, Moscow, Russia

IN SILICO ANALYSIS OF HUMAN GENOMIC SEQUENCES, ADJACENT TO HPV16 INTEGRATION SITES

1 Kolchanov N.A., ^1,2 Podkolodny N.L., ¹Ananko E.A., ¹Ignatieva E.V., ¹Podkolodnaya O.A., ¹Stepanenko I.L., ¹Merkulova T.I., ¹Lavryushev S.V., ¹Grigorovich D.A., ¹Kochetov A.V., ¹Orlova G.V., ¹Titov I.I., ¹Vishnevsky O.V., ¹Orlov Yu.L., ¹Ivanisenko V.A., ¹Vorobiev D.G., ¹Oshchepkov D.Yu., ¹Omelyanchuk N.A., ¹Pozdnyakov M.A., ¹Afonnikov D.A., ¹Matushkin Yu.G., ¹Likhoshvai V.A., ¹Ratushny A.V., ¹Katokhin A.V., ¹Turnaev I.I., ¹Proskura A.L., ¹Suslov V.V., ¹Nedosikna E.A.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia

GENEEXPRESS-2002: AN INTEGRATED SYSTEM ON GENEEXPRESSION REGULATION

Kramskova Zh.D., ²Ivashchenko T.A., ¹ Ivashchenko A.T.

1al-Farabi’s Kazakh National University, Almaty, Kazakhstan

2M.A.Ajtkhozhin’s Institute of Molecular Biology and Biochemistry, Almaty, Kazakhstan

FOUR-NUCLEOTIDE-RULE. VIRAL GENOMES

Lenski S.V.

Social Designing Centre, Ekaterinburg, Russia

EXAMPLE OF A RECONSTRUCTION OF EVOLUTION OF THE GENETIC CODE (GC)

Levitsky V.G., Podkolodny N.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

ANALYSIS OF THE NUCLEOSOME POTENTIAL OF DNA SEQUENCES GENERATED BY SELEX-EXPERIMENTS AND POSSESSING BY THE LOW AND HIGH AFFINITY TO HISTONE OCTAMER

Matushkin Yu.G., ¹Levitsky V.G. , ¹Likhoshvai V.A., ¹Vishnevsky O.V., ^2,3Kutsenko A.S., ^2,3Protopopov A.I. , ^2,3Zabarovsky E.R., ¹Kolchanov N.A.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2Center for Genomics and Bioinformatics, Karolinska Institute, Stockholm, Sweden

3Microbiology and Tumor Biology Center, Karolinska Institute, Stockholm,Sweden

ANALYSIS OF THE SECONDARY STRUCTURE AND NUCLEOSOMAL POTENTIAL NotI SITES OF THE HUMAN GENOME

Neverov A. D., Gelfand M. S., Mironov A. A.

State Scientific Center “GosNIIGenetika”, Moscow , Russia

GENE PREDICTION IN GENOMIC DNA OF ASPERGILLUS

Orlov Yu.L., ²Potapov V.N., ¹Filippov V.P.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2Institute of Mathematics SB RAS, Novosibirsk, Russia

RECOGNIZING FUNCTIONAL DNA SITES AND SEGMENTING GENOMES USING THE PROGRAM COMPLEXITYPROFILE

Orlov Yu.L., Kolchanov N.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

CONTEXTUAL COMPLEXITY OF COMPLETE GENOMIC SEQUENCES

Oshchepkov D. Yu, Furman D.P., Katokhin A.V., Katokhina L.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

DETECTION OF CONSERVATIVE CONFORMATIONAL PROPERTIES OF INSERTION SITES FOR DROSOPHILA RETROTRANSPOSONS

Oshchepkov D.Yu., ²Bugreev D.V.,¹ Vityaev, E.E., ²Nevinsky G.A.

1 Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2 Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia

STUDY OF THE CONTEXT-DEPENDENT CONFORMATIONAL AND PHYSICOCHEMICAL PROPERTIES OF DNA TOPOISOMERASE I CLEAVAGE SITES

Rakhmanaliev E.R., Klimov E.A.

Vavilov Intitute of General Genetics, RAS, Moscow, Russia

IDENTIFICATION OF FOUR GENES ON HUMAN CHROMOSOME 3 HOMOLOGOUS TO THE KNOWN GENES ON OTHER CHROMOSOMES BY IN SILICO ANALYSIS

Dolgopolov A.Yu.

Integreted Genomics, Moscow, Russia

MULTIPLATFORM INTEGRATED PROGRAM PACKAGE JGENOMEEXPLORER FOR GENOMIC ANALYSIS

Alexeyenko A.V.

Breeding Modeling Section, Northern Caucasus Research Institute for Horticulture and Viticulture, Krasnodar, Russia

S-RNASES IN THREE PLANT FAMILIES WITH GAMETIPHYTIC SELF-INCOMPATIBILITY: PHYLOGENY RELATED TO A PUTATIVE NUMBER OF S-LOCI IN ROSACEAE

Babkin I.V., Mikheev M.V., Shchelkunov S.N.

State Research Center of Virology and Biotechnology Vector, Koltsovo, Russia

COMPARATIVE STUDY OF THE ORTHOPOXVIRUS GENES A27L, A56R, B8R, AND Ñ11R

Danilova L.V., ²Gelfand M.S.

1Institute of information transmission problems, Moscow, Russia

2Integrated Genomics, Moscow, Russia

SEARCH FOR REGULATORY SIGNALS IN GROUPS OF ORTHOLOGOUS GENES OF GAMMA – PROTEOBACTERIA

Gerasimova A.V., ¹Rodionov D.A., ²Mironov A.A., ^1,2Gelfand M.S.

1State Scientific Center GosNIIGenetika, Moscow, Russia

2IntegratedGenomics-Moscow, Moscow, Russia

FNR/DNR/ANR-REGULON IN GAMMA-PROTEOBACTERIA

Kotelnikova E.A., Gelfand M.S.

GosNII “Genetika”,Moscow, Russia

IntegratedGenomics-Moscow, Moscow, Russia

TRANSCRIPTIONAL REGULATION OF A NEW BACTERIOCIN-PRODUCING SYSTEM IN STREPTOCOCCUS EQUI.

Laikova O.N.

State Scientific Center GosNIIGenetika, Moscow, Russia

SYSTEMATIC PREDICTION OF REGULATORY INTERACTIONS IN THE LACI FAMILY OF TRANSCRIPTIONAL REGULATORS

COMPARATIVE STUDY OF THE ORTHOPOXVIRUS GENES B19R AND B29R 

1Omelianchuk N.A., ²Gusev V.D., ²Nemytikova L.A., ¹Aksenovich A.V.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2Institute of Mathematics SB RAS, Novosibirsk, Russia

COMPARATIVE ANALYSIS OF APETALA1 HOMOLOGUES

Panina E.M., ^1,2Vitreschak A.G., ¹Mironov A.A., ¹Gelfand M.G.

1Integrated Genomics, Moscow, Russia

2 Institue of Problems for Information Transmission, Russian Academy of Science, Moscow, Russia BIOINFORMATICS APPROACH TO ANALYSIS OF REGULATION OF AROMATIC AMINO ACIDS BIOSYNTHESIS IN BACILLUS/CLOSTRIDIUM GROUP

Panina E.M., ²Vassieva O., ¹Gelfand M.S., ²Overbeek R.

1 Integrated Genomics, Moscow, Russia

2 Integrated Genomics Inc., Chicago, USA

PREDICTION OF NEW ENZYME INVOLVED IN PEPTIDOGLYCAN RECYCLING

Permina E A, ^{1, 2}Gelfand M S

1GosNII Genetika, Moscow, Russia

2Integrated Genomics – Moscow, Moscow, Russia

REGULATION OF THE HEAT SHOCK RESPONSE OF β-, γ- AND ε-PROTEOBACTERIA

Ravcheyev D.A., Gelfand M.S., Mironov A.A., Rakhmaninova A.B.

State Scientific Center of Biotechnology “NII Genetika”, Moscow, Russia

PURINE REGULON OF GAMMA-PROTEOBACTERIA

Rodionov D.A., ²Mironov A.A., ^1,2Gelfand M.S.

1 State Scientific Center GosNIIGenetika, Moscow, Russia

2 Integrated Genomics – Moscow, Moscow, Russia

COMPUTATIONAL ANALYSIS OF THE BIOTIN REGULON IN BACTERIAL GENOMES

Vitreschak A.G., ²Rodionov D.A., ³Mironov A.A., ³Gelfand M.S.

1 Institute for Problems of Information Transmission, Moscow, Russia

2 State Scientific Center GosNIIGenetika, Moscow, Russia

3 Integrated Genomics – Moscow, , Moscow, Russia

REGULATION OF RIBOFLAVIN BIOSYNTHESIS GENES BY A CONSERVED RNA ELEMENT IN BACTERIA

Alikina T.Y. , ^1,2Zelenin S.M., ¹Bondar A.A.

1 Novosibirsk Institute of Bioorganic Chemistry, Novosibirsk, Russia

2 Karolinska Institutet, Stockholm, Sweden

THEORETICAL ANALYSIS OF TRANSLATIONAL EFFICIENCY OF THE AQUAPORIN 4 MRNA ISOFORMS

Baranova A.V., ¹Lobashev A.V., ¹Ivanov D.V., ²Krukovskaya L.L., ³Zinchenko V.V., ³Shestakov S.V., ²Kozlov A.P., ¹Yankovsky N.K.

1 Vavilov Institute of General Genetics, Moscow, Russia

2 Biomedical Center, Research Institute of Pure Biochemicals , St. Petersburg, Russia

3 Department of Genetics, Moscow State University, Moscow, Russia

A COMPUTER DIFFERENTIAL DISPLAY REVEALS GENES WITH SPECIFIC EXPRESSION PATTERNS: FROM POTENTIAL HUMAN TUMOR MARKERS DOWN TO PLANT STRESS-RESISTANCE GENES.

Lyubetsky E.V., Lyubetsky V.A.

Institute for Information Transmission Problems RAS, Moscow, Russia

ALGORITHM FOR SEARCHING FOR ALTERNATIVE SECONDARY RNA STRUCTURES

1Nurtdinov R.N., ²Artamonova I.I., ³Mironov A. A., ³Gelfand M. S.

1Moscow State University, College of Physics, Department of Biophysics, Moscow, Russia

2 Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry RAS, Moscow, Russia

3 State Scientific Center GosNIIGenetika, Moscow, Russia

ARE PATTERNS OF ALTERNATIVE SPLICING OF MAMMALIAN GENES CONSERVED?

¹Pichueva A.G., ²Kochetov A.V., ¹Zagoruiko N.G.

1Institute of Mathematics SB RAS, Novosibirsk, Russia

2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

STUDY OF THE RELATIONS BETWEEN EXPRESSION LEVEL AND CONTEXTUAL CHARACTERISTICS OF YEAST GENE FINCTIONAL REGIONS BY THE ZET METHOD

1Titov I.I., ¹Kochetov A.V., ¹Kolchanov N.A., ²Sarai A.

1Institute of Cytology and Genetics, Novosibirsk, Russia

2RIKEN Institute, Tsukuba, Japan

COMPUTER ANALYSIS OF MRNA UNTRANSLATED REGIONS OF HYPOXIA-INDUCED CORN GENES

¹Titov I.I., ²Pal’yanov2 A.Yu.

1Institute of Cytology and Genetics, Novosibirsk, Russia

2Novosibirsk State University, Novosibirsk, Russia

SHORT-RANGE CORRELATIONS IN GENE EXPRESSION PROFILES

Vorobiev D.G.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

ALGORITHM FOR PREDICTING THE EVOLUTIONARILY CONSERVED SECONDARY STRUCTURES OF RNA

Vorobiev D.G., Titov I.I., Ivanisenko V.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

GArna INTERNET RESOURCE FOR THE ANALYSIS OF THE RNA SECONDARY STRUCTURE: ITS STATE IN 2002

Vorobiev D.G., Titov I.I., Omelyanchuk N.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

SEARCHING FOR THE ANTISENSE INTERACTIONS BETWEEN 5’UTR oF EUKARYOTIC GENES

Ananko G.G.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

GENESIS OF THE MECHANISMS UNDERLYING DIRECTED SEARCH FOR BENEFICIAL MUTATIONS

Dromashko S.E., ²Makeyeva E.N., ¹Zheludok A.A.

Institute of Genetics and Cytology at the National Academy of Sciences of Belarus, Minsk, Republic of Belarus

2Johns Hopkins University, Baltimore, USA

ELECTRONIC ENCYCLOPAEDIA IN GENETICS. VERSION 1

1Kolchanov N.A., ²Valishev A.I., ¹Popova N.A.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2High College of Informatics NSU, Novosibirsk, Russia

ON SPECIALIZATION “BIOINFORMATICS” IN THE NOVOSIBIRSK STATE UNIVERSITY AND HIGH COLLEGE OF INFORMATICS OF NOVOSIBIRSK STATE UNIVERSITY

Mikhienko E.V., Goncharov S.S., Vityaev E.E.

Sobolev Institute of Mathematics, SB RAS, Novosibirsk, Russia

LOGICAL SPECIFICATION OF NEURAL NETWORKS

Tarasov D.S, ¹Akberova N.I.,² Leontiev A. Yu.

1Kazan state university, Kazan , Russia,

2Kazan state academy of veterinary medicine, Kazan , Russia

THE ARCHITECTURE OF CELL DEVICE

1Titov I.I., ²Sarai A.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2RIKEN Institute, Tsukuba, Japan

EFFECTS OF CORRELATIONS DURING RIBOSOME MOVEMENT ALONG MRNA

Vityaev E.E., Khomitheva I.V.

Institute of Mathematics SB RAS, Novosibirsk, Russia

SURVEY OF THE SCIENTIFIC DISCOVERY FOUNDATIONS

1Vityaev E.E., ²Kostin V.S., ³Podkolodny N.L., ⁴Kolchanov N.A.

1Institute of Mathematics SB RAS, Novosibirsk, Russia

2Institute of Economics and Industrial Engineering of SB RAS, Novosibirsk, Russia

3Institute of Computer Mathematics and Mathematical Geophysics of SB RAS, Novosibirsk, Russia ⁴Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

NATURAL CLASSIFICATION OF NUCLEOTIDE SEQUENCES

Berlizev A. A., Krasovitskiy A. M., Myasnikoff N. N., Biaysheva Z. M.

Institute of Mechanics and Mathematics, Almaty, Republic of Kazakhstan

Department of Applied Mathematics, al-Faraby Kazakh National University, Almaty, Republic of Kazakhstan

EDUCATIONAL COMPUTER PROGRAMS “MENDEL’S LAWS” AND “EXPERIMENTS WITH DROSOPHILA MELANOGASTER”

Kravatsky Y.V., Nikitin A.M.

Engelhardt Institute of Molecular Biology RAS, Moscow, Russia

EFFICIENT METHODS FOR ADEQUATE GRAPHICAL PRESENTING MOLECULES AND MOLECULAR COMPLEXES

Afonnikov D.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

CONTRIBUTION OF COADAPTIVE SUBSTITUTIONS TO THE STABILITY OF HYSICOCHEMICAL PROPERTIES OF ATP-BINDING SITES IN PROTEIN KINASES

Afonnikov, D. A., Ivanisenko V.A., Grigorovich, D.A., Nikolaev, S.V., Kolchanov, N.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

RESOURCES FOR THE ANALYSIS OF PROTEIN SEQUENCES AND STRUCTURES IN THE GENEEXPRESS SYSTEM

Akimov Y.M., Sidorenko S.P.

R.E. Kavetsky Institute of Experimental Pathology, Oncology and Radiobiology National Academy of Sciences of Ukraine, Kyiv, Ukraine

STUDY OF CD150 CYTOPLASMIC TAIL INTERACTIONS WITH SH2-DOMAINS

1Anashkina, A.A., ²Berezovsky, I.N., ³Namiot,V.A., ⁴Tumanyan, V.G., ^4*Esipova, N.G.

1Moscow Institute of Physics and Technology, Moscow, Russia

2Weizmann Institute of Science, Rehovot, Israel

3Research Institute of Nuclear Physics of Moscow State University, Moscow, Russia

4Engelhardt Institute of Molecular Biology RAS, Moscow, Russia

DOMAIN STRUCTURE OF GLOBULAR PROTEINS AND DNA-PROTEIN INTERACTIONS

Grigorovich D.A., Ivanisenko V.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

ENPDB: A RETRIEVAL SYSTEM FOR THE PDB DATABANK

1Ivanisenko V. A.,³Debelov V. A., ⁴Pintus S. S., ³Matsokin A. M., ¹Nikolaev S. V., ¹Grigorovich D. A., ¹Kolchanov N. A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2State Research Center of Virology and Biotechnology “VECTOR”, Koltsovo, Russia

3Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia ⁴Novosibirsk State University, Novosibirsk, Russia

PDBSITESCAN: A TOOL FOR SEARCH FOR THE BEST-MATCHING SUPERPOSITION IN THE DATABASE PDBSITE

Kalinina O.V.

State Scientific Center GosNIIGenetika, Moscow, Russia

RARE RESIDUES FORM THE CHANNEL IN TRANSMEMBRANE TRANSPORTERS

1Kilosanidze, G.T., ²Kutsenko, A.S., ¹Esipova,N.G., ¹Tumanyan, V.G.

1Engelhardt Institute of Molecular Biology RAS, Moscow, Russia

2Centre for Genomics and Bioinformatics, Karolinska Institute, Stockholm, Sweden

NONSTANDARD APPROACH FOR a –HELICES ELUCIDATION

Konstantinov Y.M., ¹Rogozin I.B., Tarasenko V.I.

Siberian Institute of Plant Physiology and Biochemistry, SB RAS, Irkutsk, Russia

1Institute of Cytology and Genetics, Siberian Division RAS, Novosibirsk, Russia

COMPUTATIONAL ANALYSIS OF POTENTIAL DISULPHIDE BRIDGES IN PLANT DNA TOPOISOMERASE I

Laskin A., ^1,2Korotkov E., ²Kudryashov N.

1Bioengineering Center of Russian Academy of Sciences, Moscow, Russia

2 Moscow Physical Engineering Institute, Moscow, Russia

NEW METHOD OF LATENT PERIODICITY DETECTION MAY DETERMINE STRUCTURALLY RELATED PROTEINS AND PROTEIN FAMILIES

1Nikolaev S. V., ¹Afonnikov D. A., ^2,1 Ivanisenko V. A., ²Bazhan S. I., ¹ Kolchanov N. A.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2 State Research Center of Virology and Biotechnology VECTOR, Koltsovo, Russia

COMPARISON OF METHODS FOR PREDICTING PROTEASOME CLEAVAGE MOTIFS

1Nikolaev S. V., ^2,1 Ivanisenko V. A., ¹Afonnikov D. A., ²Bazhan S. I., ¹ Kolchanov N. A.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2 State Research Center of Virology and Biotechnology VECTOR, Koltsovo, Russia

AN INDEX FOR ESTIMATING THE EFFICIENCY OF ANTIGENIC EPITOPE GENERATION DURING PROTEASOMAL PROTEOLYSIS

Nizolenko L.Ph., Bachinsky A.G., Yarigin A.A., Naumochkin A.N.

State Research Centre of Virology and Biotechnology “Vector”, Koltsovo, Russia

PROTEIN FAMILY PATTERNS BANK PROF_PAT IS WORTHWHILE RIVAL TO WORLD-KNOWN “SECONDARY” BANKS.

Novichkov P.S., ^1,2Gelfand M.S., ^1,2Mironov A.A.

1 Integrated Genomics, Moscow, Russia ² GosNIIGenetika, Moscow, Russia

MUTATION RATE OF RIBOSOMAL PROTEINS AND THE 3D STRUCTURE OF THE SMALL RIBOSOMAL SUBUNIT

Novichkov P.S., ^1,2Gelfand M.S., ^1,2Mironov A.A.

1Integrated Genomics, , Moscow, Russia

2GosNIIGenetika, Moscow, Russia

RELATIVE MUTATION RATE OF BACTERIAL PROTEINS AND PREDICTION OF THE DISTANCE BETWEEN ORTHOLOGOUS GENES

Palagina G.S., Sidorenko S.P.

R.E. Kavetsky Institute of Experimental Pathology, Oncology and Radiobiology of National Academy of Sciences of Ukraine, Kyiv, Ukraine

MODELING OF CD150 CYTOPLASMIC TAIL INTERACTIONS WITH SH2D1A AND Fyn SH2-DOMAIN

Ragulina L.E., ²Makeev V.Ju., ³Esipova N.G., ³Tumanyan V.G., ²Bogush V.G., ²Sidoruk K.S., ²Debabov V.G.

1Moscow Institute of Physics and Technology, Moscow, Russia

2State Scientific Center “GosNIIGenetika”, Moscow, Russia

3Engelhardt Institute of Molecular Biology RAS, Moscow, Russia

SPIDER SILK FIBROUS PROTEIN b -STRUCTURE AND LARGE PERIODICAL PATTERNS

1Sadovskaya N.S., ²Sutormin R.A., ³Rakhmaninova A.B., ²Gelfand M.S.

1Institute of Information Transmission Problems RAS, Moscow, Russia

2 GosNIIGenetika, ³ Integrated Genomics, Moscow, Russia

BENCHMARKING OF PROGRAMS FOR RECOGNITION OF TRANSMEMBRANE SEGMENTS IN TRANSPORTER PROTEINS

Sobolev B.N., Fomenko A.E., Filimonov D.A., Poroikov V.V.

V.N. Orekhovich Institute of Biomedical Chemistry RAMS, Moscow, Russia

PROTEIN PROFILES BASED ON STRUCTURAL DESCRIPTORS OF AMINO ACID RESIDUES

Surya pavan Yenamandra, Chanchal K Mitra

Department of Biochemistry, University of Hyderabad, Hyderabad

PROTEIN SEQUENCE STUDIES USING FRACTALS

1Titov I.I., ²Pal’yanov A.Yu., ^1,3 Ivanisenko V.A.

1Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia

2Novosibirsk State University, Novosibirsk, Russia

3 SRC VB “Vector”, Novosibirsk, Russia

DESIGN OF A KNOTTED CUBIC-LATTICE PROTEIN

1Zagoruiko N.G., ¹Kutnenko O.A., ²Nikolaev S.V., ²Ivanisenko V.A.

1Institute of Mathematics SB RAS, Novosibirsk Russia

2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

RECOGNITION OF OCCURRENCE AND LOCALIZATION OF CLEAVAGE SITE IN SIGNAL PEPTIDES

Zharkov D.O.

Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia

COMBINING BIOINFORMATICS AND STRUCTURAL METHODS FOR ANALYSIS OF KEY FUNCTIONAL RESIDUES IN DNA REPAIR ENZYMES

Dachtchian K. A., Mironov A.A.

Integrated Genomics , Moscow, Russia

AUTOMATED COMPARATIVE MAPPING OF PROTEIN DOMAINS AND CREATION OF A DOMAIN-BASED ORTOLOG TABLE

Vlasov P.K.

Institute of Molecular Biology RAS, Moscow, Russia

PREDOMINANT CONFORMATIONS OF OLIGOPEPTIDE FRAGMENTS OF GLOBULAR PROTEINS

Axenovich A.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

VARIABILITY OF FLOWER DEVELOPMENT GENE NETWORKS IN SEVERAL PLANT SPECIES

1Borisova I.A., ²Zagoruiko N.G., ³Likhoshvai V.A., ³Ratushny A.V., ³Kolchanov N.A.

1 Novosibirsk State University, Novosibirsk , Russia

2 Institute of Mathematics SB RAS, Novosibirsk, Russia

3 Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

DIAGNOSTICS OF MUTATIONS BASED ON ANALYSIS OF GENE NETWORKS

Dobrynin A.A., Makarov L.I., ¹Podkolodny N.L.

Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia

1Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia

A GRAPH-THEORETICAL APPROACH TO COMPUTER ANALYSIS OF GENE NETWORK STRUCTURE

1 Fadeev S.I., ¹Berezin A.Yu., ¹Gainova I.A., ¹Kogai V.V., ²Ratushny A.V., ²Likhoshvai V.A. ¹Mathematical Institute SB RAS, Novosibirsk, Russia

2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

DEVELOPMENT OF THE PROGRAM SOFTWARE FOR MATHEMATIC MODELING OF THE GENE NETWORK DYNAMICS

¹Fadeev S.I., ²Klishevich M.A. ³Likhoshvai V.A.

1 Mathematical Institute of SB RAS, Novosibirsk, Russia

Novosibirsk State University, Novosibirsk, Russia

3 Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

QUALITATIVE AND NUMERICAL STUDYING OF HYPOTHETICAL GENE NETWORKS BY THE EXAMPLE OF THE M(n,n) MODEL

1Fadeev S.I., ²Osokina V.A., ³Likhoshvai V.A.

1 Mathematical Institute of SB RAS, Novosibirsk, Russia

2Novosibirsk State University, Novosibirsk, Russia

3 Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

ANALYSIS OF PROPERTIES OF HYPOTHETICAL GENE NETWORKS WITH POSITIVE FEEDBACK

1Fadeev S.I., ²Vernikovskaya E.V., ²Purtov A.V., ³Likhoshvai V.A.

1 Mathematical Institute of SB RAS, Novosibirsk, Russia

2Novosibirsk State University, Novosibirsk, Russia

3 Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

DETERMINATION OF BIFURCATIONAL PARAMETER VALUES OF MATHEMATICAL MODEL Ì(n,k) OF HYPOTHETICAL GENE NETWORKS

Ibragimova S.S., Smirnova O.G., Shavrukov Yu.N., StepanenkoI.L.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

A HYBRID NETWORK OF NITROGEN-FIXING NODULES: INTERGENOMIC INTERACTIONS OF BACTERIA AND HOST PLANT

Kolchanov N.A., ^1,2Podkolodny N.L., ¹Likhoshvai V.A.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia

COMPUTER SYSTEMIC BIOLOGY: INFORMATIONAL AND SOFTWARE TOOLS FOR COMPLEX MOLECULAR BIOLOGICAL SYSTEMS

Kolpakov F.A.

Digital Design Technolgy Institute SB RAS, Novosibirsk, Russia

Biosoft.Ru, Novosibirsk, Russia

BIOUML – FRAMEWORK FOR VISUAL MODELING AND SIMULATION OF BIOLOGICAL SYSTEMS

Kudryavtseva A.N., Stepanenko I.L.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

GENE NETWORK OF GLUTATHIONE HOMEOSTASIS: A RESPONSE TO OXIDATION STRESS

1Latypov A.F., ¹Nikulichev Yu.V., ²Likhoshvai V.A., ²Ratushny A.V., ²Matushkin Yu.G., ²Kolchanov N.A. ¹Institute of Theoretical and Applied Mechanics SB RAS, Novosibirsk, Russia

2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

PROBLEMS OF CONTROL OF GENE NETWORKS IN A SPACE OF STABLE STATES

1Latypov A.F., ¹Nikulichev Yu.V., ²Likhoshvai V.A., ²Ratushny A.V., ²Matushkin Yu.G., ²Kolchanov N.A. ¹Institute of Theoretical and Applied Mechanics SB RAS, Novosibirsk, Russia

2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

A METHOD OF SOLVING PROBLEMS OF OPTIMAL CONTROL IN DYNAMICS OF GENE NETWORKS

Likhoshvai V.A., ¹Latypov A.F., Nedosekina E. A., Ratushny A.V., ²Podkolodny N.L.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

1Institute of Theoretical and Applied Mechanics SB RAS, Novosibirsk, Russia

2Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia TECHNOLOGY OF USING EXPERIMENTAL DATA FOR VERIFICATION OF MODELS OF GENE NETWORK OPERATION

2Loktev K.A., ²Tkachev Yu.A., ¹Ananko E.A., ^{1, 2}Podkolodny N.L.

1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2Institute of Computational Mathematics and Mathematical Geophysics SB RAS, Novosibirsk, Russia

A SYSTEM FOR VISUAL MODELING OF GENE NETWORKS’ STRUCTURAL AND FUNCTIONAL ORGANIZATION

Nedosekina E. A., Ananko E. A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

GENE NETWORK OF MACROPHAGE ACTIVATION UNDER THE ACTION OF INTERFERON-GAMMA AND LIPOPOLYSACCARIDES

Nedosekina E. A., Ananko E. A., Likhoshvai V.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

CONSTRUCTION OF MATHEMATICAL MODEL OF THE GENE NETWORK ON MACROPHAGE ACTIVATION UNDER THE ACTION OF IFN-g AND LPS

Omelianchuk N.A., Aksenovich A.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

FRAGMENTS OF GENE NETWORK OF FLOWER DEVELOPMENT IN ARABIDOPSIS UNDER LONG DAY CONDITIONS AND THEIR DESCRIPTION IN THE GENENET SYSTEM

Proscura A.L., Ignatieva E.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

MOLECULAR-GENETICAL MECHANISMS OF ADIPOCYTE REGULATION: REPRESENTATION IN GENENET DATABASE

Ratner V.A., Vasylieva L.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

Novosibirsk State University, Novosibirsk, Russia

THE CONCEPT OF MOLECULAR GENETIC REGULATORY SYSTEMS (MGRS) AND POLYGENIC SYSTEMS

Ratner V.A., Vasylieva L.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

Novosibirsk State University, Novosibirsk, Russia

THE CONCRETE POLYGENIC SYSTEM – RADIUS INCOMPLETUS – AS EXAMPLE OF ACCORDANCE OF THE MGRS NETS AND POLYGENIC SYSTEM

Ratushny A.V. , Likhoshvai V.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

COMPUTER ANALYSIS OF THE EFFECT OF MUTATIONS ldl RECEPTOR GENE ON THE REGULATION CHOLESTEROL BIOSYNTHESIS IN THE CELL

Ratushny A.V., Likhoshvai V.A., Kolchanov N.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

ANALYSIS OF MUTATIONAL PORTRAITS OF GENE NETWORKS

Ratushny A.V., Likhoshvai V.A., Matushkin Yu.G., Kolchanov N.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

EVOLUTION OF DIPLOID GENE NETWORK OF CHOLESTEROL BIOSYNTHESIS REGULATION IN A CELL

Smirnova O.G., Ibragimova S.S., Shavrukov Yu.N., Stepanenko I.L.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

NEGATIVE REGULATION OF PLANT PHOTOMORPHOGENESIS

Stepanenko I.L., Grigor’ev S.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

ORGANIZATION OF THE GENE NETWORK OF APOPTOSIS

Suslov V.V., ¹Vityaev E.E., Ignatieva E.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

1Institute of Mathematics SB RAS, Novosibirsk, Russia

INTERPRETATION OF GENE NETWORKS IN THE CONTEXT OF ANOKHIN’S THEORY OF FUNCTIONAL SYSTEMS

Suslov V.V., Ignat’eva E.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

MOLECULAR GENETIC MECHANISMS REGULATING THE THYROID SYSTEM: DESCRIPTION IN THE TRRD AND GENENET DATABASES

Turnaev I. I., Podkolodnaya O.A.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

GENE NETWORK ON CELL CYCLE CONTROL

Vodyanitskii S.N., ¹Yurlova N.I., Suslov V.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

1Institute of Animal Systematics and Ecology SB RAS, Novosibirsk, Russia

FORMAL DESCRIPTION OF THE TREMATODE ECOPARASITIC SYSTEM ON USING THE GENENET DATA FORMAT

Kolpakov F.A.

Digital Design Technolgy Institute SB RAS, Novosibirsk, Russia

Biosoft.Ru, Novosibirsk, Russia

USING BIOUML FRAMEWORK FOR VISUAL MODELING AND SIMULATION OF BIOLOGICAL SYSTEMS

Baranovskii A.G., ^1,2Buneva V.N., ³Doronin B.M. , ⁴Mogelnitskii A.S., ⁵Favorova O.O., ^1,2Nevinsky G.A. ¹Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia

2Novosibirsk State University, Novosibirsk, Russia

3Novosibirsk Medical University, Novosibirsk, Russia

4Novosibirsk Army Hospital, Novosibirsk, Russia

5Russian State Medical University, Moscow, Russia

SUBSTRATE SPECIFICITY OF DNA-HYDROLYZING ANTIBODIES FROM BLOOD OF PATIENTS WITH MULTIPLE SCLEROSIS

1 Khlimankov D.Yu., ¹Rechkunova N.I., ^1,2Khodyreva S.N., ¹Petruseva I.O., ²Nazarkina J.K., ¹Belousova E.A., ^1,2Lavrik O.I.

1Novosibirsk Institute of Bioorganic Chemistry, SB RAS, Novosibirsk, Russia

2Novosibirsk State University, Novosibirsk, Russia

INTERACTIONS OF RPA AND FEN-1 WITH DNA STRUCTURES APPEARED IN DNA REPLICATION AND REPAIR

Khodyreva S.N., Nazarkina J.K., Petruseva I.O., Safronov I.V., Lavrik O.I.

Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia

INTERACTION BETWEEN FEN-1 AND REPLICATION PROTEIN A

Krysanova J.S., ¹ Sinitsyna O.I., ²Ishchenko A.A., ¹Kolosova N.G., ¹Vasyunina E.A., ^1,2Nevinsky G.A. ¹Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

2Novosibirsk Institute of Bioorganic Chemistry, Novosibirsk, Russia

AGE-ASSOCIATED CHANGES IN OXIDATIVE DAMAGE IN OXYS RATS WITH INCREASED SENSITIVITY TO FREE RADICALS AND PROTECTION OF THE RATS FROM OXIDATIVE DAMAGE BY MIRTILENE FORTE AND ADRUSEN ZINCO

Orlovskaya I.A., ¹ Dubrovskaya V.V., Toporkova L.B., Chernykh E.R., Tikhonova M.A., Sakhno, V.N., ¹Buneva L.V., Kozlov V.A., ¹Nevinsky G.A.

Research Institute of Clinical Immunology Siberian Branch of RAMS, Novosibirsk, Russia

1Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia

BONE MARROW HEMOPOIESIS IN IMMUNOPATHOGENESIS OF AUTOIMMUNE-PRONE MRL/MPJLPR MICE

1Pestryakov P., ²Weisshart K., ¹Khodyreva S.N., ²Nasheuer H.-P., ¹Lavrik O.I.

1Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia

2Department of Biochemistry, Institute of Molecular Biotechnology, Jena, Germany

DOMAINS OF HUMAN REPLICATION PROTEIN A CONTACTING THE 3′-END OF THE PRIMER

Petrousseva I.O., Safronov I.V., Komarova N.I., Kamynina T.P., Lavrik O.I., Khodyreva S.N.

Novosibirsk Institute of Bioorganic Chemistry, SB RAS, Novosibirsk, Russia

AN ENZYMATIC SYNTHESIS OF 5’-END SUBSTITUTED OLIGONUCLEOTIDES USING T4 POLYNUCLEOTIDE KINASE AND g -AMIDES OF ATP, BEARING PHOTOREACTIVE GROUPS

Shcheglova T.V., Kolosova N.G., Sinitsina O.I., Vasunina E.A., Loskutova L.V.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

AGE-ASSOCIATED CHANGES IN THE LEVELS OF OXIDATIVE STRESS MARKERS IN THE BRAIN OF OXYS RATS.

Sukhanova M.V., Lavrik O.I. Safronov I.V., Khodyreva S.N.

Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia

SITE-SPECIFIC PHOTOMODIFICATION OF MAMMALIAN POLY(ADP-RIBOSE) POLYMERASE-1 WIHT PHOTOREACTIVE DNA BASE EXCISION REPAIR INTERMEDIATE

Timchenko T.V., Vasyunina E.A., Scheglova T.V., Rogozin I.B., Sinitsyna O.I.

Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia

COMPUTATIONAL PREDICTION AND EXPERIMENTAL ANALYSIS OF THE CURVED DNAs AS THE HOT SPOTS OF RECOMBINATION

Udina I.G.

N.I.Vavilov Institute of General Genetics, RAS, Moscow, Russia

COMPUTER ANALYSIS OF D-LOOP OF MITOCHONDRIAL DNA VARIATION IN ASIAN HORSE BREEDS