The Conference Sessions will be held in the Small Conference Hall and in Music Salon
(room №220) of the House of Scientists
Participants are welcome to pass their demonstration material to the room № 200
of the House of Scientists in the 30 min prior to the beginning of the Sessions
July, 14, Sunday Foyer of the Small Conference Hall
12:30-19:00 Registration of the conference participants*
Lunch 14:30-15:30
*Participants who come later are welcome for registration in the Organizing Committee room (House of scientists room №200) on any conference day.
July, 15, Monday Small Conference Hall
9:00-9:30 Registration of the conference participants (Foyer of the Small Conference Hall)
9:30-10:00 Opening Ceremony
Speech of Welcome: Academician V.K. Shumny, Director of the Institute of Cytology & Genetics SB RAS;
Greetings for participants of the Conference: Prof.N.A.Kolchanov; Prof.R.Hofestadt
10:00-13:30 Morning Session
REGULATORY GENOMIC SEQUENCES
Chairpersons:
Dr. E. Wingender, German Research Centre for Biotechnology, Braunschweig, Germany
Dr. V. Makeev, State Scientific Centre NIIGenetika, Moscow, Russia
Reports |
Timeline |
Mizushima H., Ichikawa H., Ohki M.Center for Medical Genomics and Cancer Genomics Division, National Cancer Center Research Institute, Tokyo, Japan ANALYSIS TOOL FOR FINDING TRANSCRIPTION REGULATORY ELEMENTS, USING TRANSCRIPTION FACTOR DATA BASE (TFDB) |
10:00-10:30 |
Ignatieva E.V., Ananko E.A., Podkolodnaya O.A., Stepanenko I.L., Merkulova T.I., Pozdnyakov M.A., Podkolodny N.L., Naumochkin A.N., Romashchenko A.G. Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia TRANSCRIPTION REGULATORY REGIONS DATABASE (TRRD): ITS STATUS IN 2002 |
10:30-11:00 |
Coffee-break |
11:00-11:30 |
Frith M.C., Hansen U., Weng Z. Boston University, Boston, USA A GIBBS SAMPLING ALGORITHM TO DETECT CLUSTERED CIS-ELEMENTS |
11:30-12:00 |
1, 2 Wingender E., 1Kel A.E., 1Gößling E., 1Hornischer K., 1Lewicki-Potapov B., 1Tchekmenev D., 1Kel-Margoulis O.V. 1 BIOBASE GmbH, Wolfenbüttel, Germany; 2 GBF German Research Centre for Biotechnology, Braunschweig, Germany ALL HUMAN GENOME ANALYSIS FOR REGULATORY SIGNALS |
12:00-12:30 |
Lyubetsky V.A., Rubanov L.I. Institute for Information Transmission Problems RAS, Moscow, Russia PARALLEL ALGOTITHM FOR SEARCHING REGULATORY SIGNAL IN BACTERIAL GENOME |
12:30-13:00 |
Oshchepkov D. Yu., Turnaev I.I.,Vityaev E.E. Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia SITECON: A METHOD FOR RECOGNIZING TRANSCRIPTION FACTOR BINDING SITES BASING ON ANALYSIS OF THEIR CONSERVATIVE PHYSICOCHEMICAL AND CONFORMATIONAL PROPERTIES |
13:00-13:30 |
Lunch 13:30-14:30
14:30-18:00 Evening Session
REGULATORY GENOMIC SEQUENCES
Chairpersons:
Prof. V. Lyubetsky, Institute for Information Transmission Problems RAS, Moscow, Russia
Dr. H. Mizushima, Center for Medical Genomics and Cancer Genomics Division, National Cancer Center Research Institute, Tokyo, Japan
Reports |
Timeline |
3Lifanov, A.P., 1Nazina, A.G., 2Makeev, V.J., 1Papatsenko, D.A., 4Regnier, M., 1Desplan.C. 1Department of Biology, New York University, New York, USA 2State Scientific Centre NIIGenetika, Moscow, Russia 3Institute of Chemical Physics, Russian Academy of Sciences, Moscow, Russia 4INRIA, Roquencour, France COMPUTER IDENTIFICATION OF TRANSCRIPTION FACTOR BINDING SITES IN EARLY DEVELOPMENTAL ENHANCERS OF DROSOPHILA BASED ON REDUNDANT WORDS |
14:30-15:00 |
Lockwood C R., Frayling T M Department of Diabetes and Vascular Medicine, University of Exeter, United Kingdom HNF1-ALPHA BINDING SITES IN A COMPUTER SEARCH |
15:00-15:30 |
1Vityaev E.E., 2Pozdnyakov M.A.,2Orlov Yu.L., 2Vishnevsky O.V., 2Podkolodny N.L. 1Sobolev Institute of Mathematics, SB RAS, Novosibrisk, Russia 2Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia GENE DISCOVERY COMPUTER SYSTEM FOR ANALYSIS OF REGULATORY REGIONS |
15:30-16:00 |
Coffee break |
16:00-16:30 |
Sarai A. RIKEN Tsukuba Institute, Tsukuba 305-0074, Japan STRUCTURE-SPECIFICITY RELATIONSHIP IN PROTEIN-DNA RECOGNITION |
16:30-17:00 |
1,3Shelest E., 1Kel A.E., 1Gößling E., 1, 2Wingender E. 1 GBF German Research Centre for Biotechnology, Braunschweig, Germany; 2 BIOBASE GmbH, Wolfenbüttel, Germany; 3 permanent address: Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia. PREDICTION OF POTENTIAL C/EBP/NF-k B COMPOSITE ELEMENTS USING THE MATRIX-BASED SEARCH METHODS |
17:00-17:30 |
Foyer of the Small Conference Hall
17:30 -18:30 1st Poster Session and Computer Demonstrations “REGULATORY GENOMIC SEQUENCES“
July, 16, Tuesday Small Confernce Hall
9:00-13:30 Morning Session
COMPARATIVE AND EVOLUTIONARY GENOMICS
Chairpersons:
Prof. L.Zhivotovsky, Institute of General Genetics RAS, Moscow, Russia
Dr. C. Watkins, University of London, Egham, Surrey, UK
Reports |
Timeline |
1 Vandenbogaert M., 2Makeev V. 1 INRIA Rocquencourt – LaBRI Bordeaux I, Le Chesnay, France and 2 State Scientific Centre 2“GosNIIGenetika”, Moscow, Russia ANALYSIS OF BACTERIAL RM-SYSTEMS THROUGH GENOME-SCALE ANALYSIS AND RELATED TAXONOMIC ISSUES |
9:00-9:30 |
Permina E. A. GosNII Genetika, Moscow, Russia COMPARATIVE ANALYSIS OF REGULATORY INTERACTIONS IN BACTERIAL GENOMES |
9:30-10:00 |
1Ramensky V.E., 2,3Bork P., 1,2Sunyaev S.R. 1Engelhardt Institute of Molecular Biology (EIMB), Vavilova 32, 119991 Moscow, Russia 2European Molecular Biology Laboratory (EMBL), Heidelberg, Germany, 3Max-Delbrueck Center for Molecular Medicine (MDC), Berlin, Germany SURVEY OF HUMAN NON-SYNOMYMOUS SNPs |
10:00-10:30 |
Zhivotovsky L.A. Institute of General Genetics RAS, Moscow, Russia COMPUTATIONAL BIOLOGY AND ANALYSIS OF HUMAN POPULATIONS WITH USE OF DNA MARKERS |
10:30-11:00 |
Coffee break |
11:00-11:30 |
Watkins C. Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, UK THE CHANNEL CAPACITY OF SELECTIVE BREEDING: LIMITS ON THE INFORMATION STORABLE IN GENETIC SYSTEMS |
11:30-12:00 |
1 Yuryev A., 2Makeyev A. 1Orchid Biosciences Inc., Princeton, NJ USA 2InforMax Inc, Bethesda, MD USA GENOTYPE CLASSIFICATION AND ALLELIC PATTERN RECOGNITION USING KOHONEN SELF-ORGANIZING MAPS |
12:00-12:30 |
1Favorov A.V., 2Ochs M.F. 1State Scientific Centre “GosNIIGenetica” , Moscow, Russia 2Fox Chase Cancer Center, Philadelphia, USA. MCMC METHOD FOR IDENTIFICATION OF ALLELIC PATTERNS IN DATA WITH QUANTITATIVELY DESCRIBABLE PHENOTYPIC FEATURES |
12:30-13:00 |
Lyubetsky V.A., V’yugin V.V. Institute for Information Transmission Problems RAS, Moscow, Russia METHOD OF HORIZONTAL GENE TRANSFER DETERMINATION USING PHYLOGENETIC DATA |
13:00-13:30 |
Lunch 13:30-14:30
Foyer of the Small Conference Hall
14:30-16:15 2nd Poster Session and Computer Demonstrations “GENOME STRUCTURE AND FUNCTION”, “COMPARATIVE AND EVOLUTIONARY GENOMICS”, “RNA COMPUTATIONAL BIOLOGY”, “GENERAL PROBLEMS OF BIOINFORMATICS”
15:45-16:15 Coffee-break
July, 17, Wednesday Small Conference Hall
9:00-13:00 Morning Session
GENOME STRUCTURE AND FUNCTION
Chairperson:
Dr. M. Gelfand, GosNIIGenetika, Moscow, Russia
Reports |
Timeline |
1,2Chuzhanova N.A., 3Cooper D.N. 1 Department of Computer Science, Cardiff University, PO Box 916, Cardiff CF24 3XF, UK 2 Institute of Mathematics, Russian Academy of Science, 630090 Novosibirsk, Russia 3 Institute of Medical Genetics, University of Wales College of Medicine, Cardiff CF14 4XN UK MECHANISMS OF MUTAGENESIS AND THE ROLE OF LOCAL DNA SEQUENCE COMPLEXITY |
9:00-9:30 |
Korotkov E.V., Korotkova M.A. Kudryashov N.A. Center of Bioengineering RAS, Moscow, Russia Moscow Physical Engineering Institute, Moscow, Russia INFORMATION CONCEPTION OF PERIODICITY OF SYMBOLIC TEXTS |
9:30-10:00 |
Vorobjev Y. N. Novosibirsk Institute of Bioorganic Chemistry RAS, Novosibirsk, Russia |
10:00-10:30 |
Oparina N.J., Lacroix M.-H., Mashkova T.D. Engelhardt Institute of Molecular Biology RAS, Moscow, Russia PERICENTROMERIC ALPHA SATELLITES: NON-RANDOM DISTRIBUTION OF STRUCTURAL REARRANGEMENTS AND INSERTIONS OF DISPERSED ELEMENTS ALONG THE MONOMER |
10:30-11:00 |
Coffee-break |
11:00-11:30 |
1Orlov Yu.L., 2Gusev V.D., 2Nemytikova L.A., 2Potapov V.N. 1 Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia 2 Institute of Mathematics SB RAS, Novosibirsk, Russia DECOMPOSITION OF GENOME SEQUENCES BY REPEAT FRAGMENTS |
11:30-12:00 |
1Paskhin A.I. , 2Ramensky V.E., 3Gelfand M.S., 3Makeev V.J. 1 Moscow Institute of Physics and Technology, Moscow Region, Russia 2 Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia 3 GosNIIGenetika, Moscow, Russia IDENTIFICATION OF CODING REGIONS IN GENOMES OF LOWER EUKARYOTES BY COMPOSITIONAL SEGMENTATION OF COMPLETE GENOMES |
12:00-12:30 |
Regnier M. INRIA Le Chesnay France MATHEMATICAL TOOLS FOR REGULATORY SIGNALS EXTRACTION |
12:30-13:00 |
Lunch 13:00 -14:00
14:00 -18:15 Evening Session
GENERAL PROBLEMS OF BIOINFORMATICS
Chairpersons:
Prof. N.Zagoruiko, Institute of Mathematics SB RAS, Novosibirsk, Russia
Dr. T.Hodgman, GlaxoSmithKline, Stevenage, UK
Plenary lecture 14:00-14:45
Ratner V.A.
Institute of Cytology and Genetics, SB RAS; Novosibirsk State University, Novosibirsk, Russia
VIRTUAL REALITY AND REGULATORY SYSTEMS
Reports |
Timeline |
1,2Heymann S., 2Gabrielyan O.R., 3Ghazaryan G.G., 3Danielyan E.A., 3Hakobyan G.G. , 3Hakobyan G.O. 1Humboldt-University Berlin, Institute of Computer Science, Berlin, Germany; 2Kelman GmbH, Berlin, Germany; 3Yerevan State University, Yerevan, Armenia TOWARDS A METRICAL SPACE OF BIOLOGICAL SEQUENCES |
14:45-15:15 |
Ivanov A.O. , Tuzhilin A.A. Faculty of Mechanics and Mathematics, Moscow State University, Moscow, Russia MINIMAL TREES IN PHYLOGENETIC SPACES |
15:15-15:45 |
1Zagoruiko N.G., 1Pichueva A.G., 1Kutnenko O.A. , 2Borisova I.A. , 2Kochetov A.V., 2Ivanisenko V.A., 2Nikolaev S.V., 2Likhoshvai V.A., 2 Ratushny A.V. 1Institute of Mathematics SB RAS, Novosibirsk, Russia 2Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia APPLICATION OF THE METHODS OF INTELECTUAL DATA ANALYSIS TO SOLVING THE PROBLEMS OF BIOINFORMATICS |
15:45-16:15 |
Coffee-break |
16:15-16:45 |
1Yang Z.L., 1,2Liu G.R., 2,3 Lam K.Y. 1Center for Advanced Computations in Engineering Science (ACES) Department of Mechanical Engineering, National University of Singapore, Singapore 2 SMA Fellow, Singapore-MIT Alliance 3Institute of High Performance Computing (IHPC), Singapore A MODIFIED GENETIC ALGORITHM WITH LOCAL AND GLOBAL SEARCH TECHNIQUES |
16:45-17:15 |
1,2Vityaev E.E., 3Kovalerchuk B. 1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia 2Sobolev Institute of Mathematics SB RAS, Novosibirsk, Russia 3Central Washington University (Ellensburg), USA BIOINFORMATICS: KNOWLEDGE DISCOVERY AND DATA MINING |
17:15-17:45 |
Hodgman T.C. GlaxoSmithKline, Stevenage, United Kindom THE IMPORTANCE OF GENOME REGULATION AND STRUCTURE TO THE PHARMACEUTICAL INDUSTRY |
17:45-18:15 |
July, 18, Thursday Small Hall of the House of Scientists
9:00-13:30 Morning Session
RNA COMPUTATIONAL BIOLOGY
Chairperson:
Dr. A.Mironov, GosNIIGenetika, Moscow, Russia
Reports |
Timeline |
Gorbunov K.Yu., Lyubetsky V.A. Institute for Information Transmission Problems RAS, Moscow, Russia AN ALGORITHM FOR SEARCHING OF COMMON SECONDARY STRUCTURES IN A SET OF RNA SEQUENCES |
9:00-9:30 |
Mironov A. GosNIIGenetika, Moscow, Russia REGULATION OF BACTERIAL GENE EXPRESSION ON THE RNA LEVEL |
9:30-10:00 |
Pospisil H., Herrmann A., Pankow H., Reich J. Max-Delbrueck-Center for Molecular Medicine, Berlin, Germany A DATABASE ON ALTERNATIVE SPLICE FORMS ON THE INTEGRATED GENETIC MAP SERVICE (IGMS) |
10:00-10:30 |
Gelfand M.GosNIIGenetika, Moscow, Russia EVOLUTION OF ALTERNATIVE SPLICING |
10:30-11:00 |
Coffee-break |
11:00-11:30 |
1Kochetov A.V., 2Sarai A. 1Institute of Cytology and Genetics SB RAS, Novosiborsk, Russia 2Tsukuba Institute, The Institute of Physical Chemical Research (RIKEN), Tsukuba, Japan MRNA-LOCATED TRANSLATIONAL SIGNALS |
11:30-12:00 |
Matushkin Yu.G., Likhoshvai V.A., Kochetov A.V. Institute of Cytology and Genetics SB RAS, Novosiborsk, Russia TRANSLATION ELONGATION STAGES AND STRUCTURAL FEATURES OF mRNA REGION AT THE TRANSLATION START SITE CRITICAL FOR THE EFFICIENCY OF GENE EXPRESSION IN UNICELLULAR ORGANISMS |
12:00-12:30 |
1Vishnevsky O.V. , 2Avdeeva I.V. 1Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia 2Novosibirsk State University, Novosibirsk, Russia STUDY OF THE SPECIFIC CONTEXTUAL FEATURES OF TRANSLATION INITIATION AND TERMINATION REGIONS IN EUKARYOTES |
12:30-13:00 |
Frenkel F.E, Korotkov E.V. Center “Bioengineering” RAS, Moscow, Russia REVEALING AND FUNCTIONAL ANALYSIS OF TRNA-LIKE SEQUENCES IN VARIOUS GENOMES |
13:00-13:30 |
Lunch 13:30-14:30
14:30 -16:30 3d Poster Session and Computer Demonstrations STRUCTURAL COMPUTATIONAL BIOLOGY”, “SYSTEM COMPUTER BIOLOGY”16:00 -16:30 Coffee-break
July, 18, Thursday Music Salon (room №220)
9:00-12:20 Morning Session
FUNDAMENTAL GENETIC PROCESSES AND MECHANISMS; INTAS SECTION
Chairpersons:
Prof. N.Yankovsky, Institute of General Genetics RAS, Moscow, Russia
Sidorenko S.P., Kavetsky Institute of Experimental Pathology, Oncology and Radiobiology NASU, Kyiv, Ukraine
Foyer of the Small Conference Hall
12:30-13:00 Poster Session “FUNDAMENTAL GENETIC PROCESSES AND MECHANISMS; INTAS SECTION”
Lunch 13:00 -14:00
14:00 -17:15 Evening Session
FUNDAMENTAL GENETIC PROCESSES AND MECHANISMS; INTAS SECTION
Chairpersons:
Dr. I.Schmidt (INTAS)
Prof. H. Schröder, Institut für Physiologische Chemie, Universität Mainz, Mainz, Germany
Prof. George Nevinsky, Novosibirsk Institute of Bioorganic Chemistry SB RAS, Novosibirsk, Russia
supervisor of the INTAS Section at BGRS’2002
Reports |
Timeline |
Yurlova A.A., Belyakin S.N., Makunin I.V., Zhimulev I.F. Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia CLONING OF SUPPRESSOR OF UNDERREPLICATION GENE FROM D. ERECTA (REVEALS LOW SUBSTITUTION LEVEL FOR N-TERMINAL PART OF PROTEIN) |
14:00-14:25 |
Adonina I., Vatolina T., Scherban A., Salina E.A. The Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia THE GENOMIC ORGANIZATION AND EVOLUTION OF AEGILOPS SPELTOIDES SUBTELOMERIC REGIONS |
14:25-14:50 |
1 Graphodatsky A., 1Perelman P., 1Alkalaeva E., 1Trifonov V., 1Shtukkert A., 1Serdukova N., 1Biltueva L., 1Vorobieva N., 2Ferguson-Smith M.A., 2Yang F., 2O’Brien P., 3Robinson T.J., 4Suwattana D., 5Sharipov I.K. 1Institute of Cytology and Genetics, SB RAS, Novosibirsk, Russia 2University of Cambridge, UK 3University of Stellenbosch, SAR 4Chulalongkorn University, Bangkok, Thailand 5Institute of Genetics and Cytology, Alma-Ata, Kazakhstan KARYOTYPE EVOLUTION IN MAMMALS: A REAPPRAISAL BY COMPARATIVE CHROMOSOME PAINTING |
14:50-15:15 |
1Khusnutdinova E., 1Bermisheva M., 1Victorova T.,1Korshunova T., 1Salimova A., 3Svyatova G., 2Tambets K., 2Willems R. 1Institute of Biochemistry and Genetics of the Ufa Scientific Center of RAS, Ufa, Russia 2Dept. Evolutionary Biology, Tartu University, Tartu, Estonia 3Republican centre of health of mother and child, Kazakhstan PHYLOGEOGRAPHY OF MITOCHONDRIAL LINEAGES OF TURKIC AND URALIC – SPEAKING PEOPLE |
15:15-15:40 |
1Borinskaya S.A., 2Korotaev A.B. 1 Vavilov Institute of General Genetics, Moscow, Russia 2 Russian State University for the Humanities, Moscow, Russia CORRELATIONS BETWEEN GENETIC AND CULTURAL TRAITS IN POPULATIONS OF HUMANS |
15:40-16:05 |
Coffee-break |
16:05-16:30 |
Mazin A. V. Department of Biochemistry, School of Medicine, MCP Hahnemann University, Philadelphia, USA A COMBINATORIAL PRINCIPLE IN ORGANIZATION OF THE HOMOLOGOUS RECOMBINATION SYSTEM IN EUKARYOTES |
16:30-16:55 |
Dr. I.Schmid |
16:55-17:15 |
July, 19, Friday Small Hall of the House of Scientists
9:00-13:00 Morning Session
STRUCTURAL COMPUTATIONAL BIOLOGY
Chairpersons:
Prof. E.Korotkov, Center of Bioengineering RAS, Moscow, Russia
Dr. A.Sarai RIKEN Tsukuba Institute, Japan
Reports |
Timeline |
1Błażewicz J., 2Hammer P.L., 1Łukasiak P. 1 Institute of Computing Sciences, Poznan Univ. of Technology, Poznan, POLAND & Institute of Bioorganic Chemistry, Polish Academy of Sciences, Poznan, POLAND 2 Rutgers Center for Operations Research, Rutgers University, New Jersey, USA LOGICAL ANALYSIS OF DATA APPROACH TO THE PREDICTION OF PROTEIN SECONDARY STRUCTURES |
9:00-9:30 |
Bogdanov Yu.F., Dadashev S.Ya., Grishaeva T.M. Vavilov Institute of General Genetics RAS, Moscow, Russia DEVELOPMENT OF A STRATEGY FOR COMPUTER-ASSISSTED SEARCHING FOR FUNCTIONALLY SIMILAR PROTEINS IN EVOLUTIONARILY DISTANT ORGANISMS |
9:30-10:00 |
Kuznetsov V.A., 1Pickalov V.V. The Laboratory of Integrative and Medical Biophysics, National Institute of Child Health and Human Development, NIH, Bethesda, USA 1 Institute of Theoretical and Applied Mechanics SB RAS, Novosibirsk, Russia THE NUMBERS OF PROTEIN DOMAIN SEQUENCES AND PROTEIN CODING GENES IN THE EVOLVED PROTEOMES |
10:00-10:30 |
1,2 Ivanisenko V.A., 1 Grigorovich D.A. 1 Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia 2 SRC VB “Vector”, Koltsovo, Russia PDBSITE – DATABASE ON PROTEIN ACTIVE SITES AND THEIR ENVIRONMENT |
10:30-11:00 |
Coffee-break |
11:00-11:30 |
Afonnikov D. A., Nikolaev S.V., Ivanisenko V.A. Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia CLASSIFICATION OF LOCAL SPATIAL ENVIRONMENT OF AMINO ACID RESIDUES BY PHYSICOCHEMICAL CHARACTERISTICS: ANALYSIS OF TRANSCRIPTION FACTOR DNA-BINDING DOMAINS |
11:30-12:00 |
Krivov S. V. 1, Chekmarev S. F. 3 and Karplus M. 1,2 1Laboratoire de Chimie Biophysique, ISIS, Université Louis Pasteur, Strasbourg, France 2Department of Chemistry & Chemical Biology, Harvard University, Cambridge, Massachusetts, USA 3Institute of Thermophysics, SB RAS, Novosibirsk, Russia CONFINEMENT MOLECULAR DYNAMICS AND ITS APPLICATION TO THE STUDY OF POTENTIAL ENERGY SURFACES AND CONFORMATIONAL TRANSITIONS IN BIOMOLECULES |
12:00-12:30 |
1Logvinenko T., 2Liu J.S. 1Statistics Department, Stanford University, Stanford, CA 94305, USA; 2Statistics Department, Harvard University, Cambridge, MA 02138, USA SEQUENTIAL MONTE CARLO AND DIRICHLET MIXTURES FOR EXTRACTING PROTEIN ALIGNMENT MODELS |
12:30-13:00 |
Lunch 13:00-14:00
14:00-17:30 Evening Session
STRUCTURAL COMPUTATIONAL BIOLOGY
Chairpersons:
Prof. Yu.Bogdanov, Vavilov Institute of General Genetics RAS, Moscow, Russia
Dr. V. Kuznetsov, National Institute of Child Health and Human Development, NIH, Bethesda, USA
Reports |
Timeline |
Vlasov P.K., Kilosanidze G.T., Ukrainskii D.L., Tumanyan V.G., Esipova N.G. Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, Moscow, Russia PREDOMINANT CONFORMATIONS OF OLIGOPEPTIDE FRAGMENTS OF GLOBULAR PROTEINS |
14:00-14:30 |
1,2Sunyaev Sh.R., 1Bogopolsky G.A., 3,4Oleinikova N.V., 1,3Vlasov P.K., 5Finkelstein A.V., 4Roytberg M.A. 1 Institute of Molecular Biology RAS, Moscow, Russia 2 European Molecular Biology Laboratory (EMBL), Germany 3 Moscow Institute of Physics and Technology, Dolgoprudny, Moscow Region, Russia 4 Institute of Mathematical Problems in Biology, RAS, Pushchino, Moscow Region, Russia 5 Institute of Protein Research, RAS, Pushchino, Moscow Region, Russia ANCHOR-BASED ALIGNMENT METHOD FOR THE SEQUENCE VS. SEQUENCE AND PROFILE VS. SEQUENCE ALIGNMENT |
14:30-15:00 |
Schwarzl S. M., Huang D., Smith J.C., Fischer S. IWR Biocomputing, Heidelberg, Germany CHARGE REPARAMETRIZATION FOR FAST ATOMIC-DETAIL CALCULATIONS IN PROTEINS |
15:00-15:30 |
Novichkov P.S. Integrated Genomics, Moscow, Russia PROTEIN FAMILIES EVOLVE AT A CONSTANT RATE |
15:30-16:00 |
Coffee-break |
16:00-16:30 |
Sutormin R.A. State Scientific Center GosNIIGenetica, Moscow, Russia TRANSMEMBRANE SEGMENTS OF TRANSPORT PROTEINS: EVOLUTION, PREDICTION, ALIGNMENT |
16:30-17:00 |
1 Titov I.I. , 2Pal’yanov A.Yu. 2Novosibirsk State University, Novosibirsk, Russia THE INVERSE FOLDING OF BIOPOLYMERS |
17:00-17:30 |
July, 20, Saturday Small Conference Hall
9:00-13:00 Morning Session
SYSTEM COMPUTER BIOLOGY
Chairpersons:
Dr. O.Ozoline, Institute of Cell Biophysics RAS, Pushchino, Moscow Region, Russia
Dr. L Milanesi, Institute of Biomedical Technology CNR-ITB, Milan, Italy
Reports |
Timeline |
1,2 Mjolsness E., 1Jonsson H., 2Shapiro B., 1Meyerowitz E. 1Division of Biology and 2Jet Propulsion Laboratory, California Institute of Technology, Pasadena, USA MODELING PLANT DEVELOPMENT WITH GENE REGULATION NETWORKS INCLUDING SIGNALING AND CELL DIVISION |
9:00-9:30 |
1Ratushny A.V., 1Nedosekina E.A., 1Ignatieva E.V., 1Ananko E.A., 1Podkolodnaya O.A., 1Podkolodny N.L., 2Fadeev S.I., 2Berezin A.Yu., 2Gainova I.A., 3Latypov A.F., 3Nikulichev Yu.V., 1Matushkin Yu.G., 1Likhoshvai V.A. |
9:00-10:00 |
1Freier A., 1Hofestädt R., 2Lange M. 1 Bioinformatics Workgroup, Fakulty of Technology, Bielefeld University, Germany 2 Plant Genome and Resource Center, IPK Gatersleben, Germany IIUDB: OBJECT-ORIENTED SYSTEM FOR MODELLING, INTEGRATION AND ANALYSIS OF GENE CONTROLLED METABOLIC NETWORKS |
10:00-10:30 |
Kolchanov N.A., Stepanenko I.L., Podkolodnaya O.A., Ananko E.A., Ignatieva Institute of Cytology and Genetics SB RAS, Novosibirsk, Russia GENE NETWORKS: PRINCIPLES OF ORGANIZATION AND MECHANISMS OF OPERATION AND INTEGRATION |
10:30-11:00 |
Coffee-break |
11:00-11:30 |
1Surkova S. Yu., 1Samsonova M.G., 1Myasnikova E.M. 1 St.Petersburg State Technical University, Russia ; TEMPORAL CHANGES IN POSITION OF SEGMENTATION GENE EXPRESSION DOMAINS IN DROSOPHILA EARLY EMBRYO |
11:30-12:00 |
Reinitz J. B. Dept. Of Applied Math and Statistics, Stony Brook University, Stony Brook NY, USA BIOINFORMATIC ANALYSIS OF A MORPHOGENETIC FIELD IN DROSOPHILA |
12:00-12:30 |
1,2 Spirov A.V., 3Holloway D.1State University of New York at Stony Brook, Stony Brook NY,USA 2The Sechenov Institute of Evolutionary Physiology and Biochemistry, St.Petersburg, Russia 3Mathematics/B.C.Institute of Technology/Burnaby, B.C. Canada MEASUREMENTS OF PRECISION OF MOLECULAR MECHANISMS FOR EARLY DROSOPHILA EMBRYO SEGMENTATION |
12:30-13:00 |
Lunch 13:00-14:00
14:00-17:00 Evening Session
SYSTEM COMPUTER BIOLOGY
Chairpersons:
Dr. M.Samsonova, St.Petersburg State Technical University, St.Petersburg, Russia
Dr. J. Reinitz, Stony Brook University, Stony Brook, USA
Reports |
Timeline |
1,2Ozoline O.N., 2Fujita N., 2,3Ishihama A. 1Institute of Cell Biophysics, RAS, Pushchino, Moscow Region, Russia 2National Institute of Genetics, Mishima, Shizuoka 411-8540, Japan 3Nippon Institute for Biological Science, Ome, Tokyo 198-0024, Japan Genome-wide expression profiling of Escherichia coli W3110: MICROARRAY AND STATISTIC ANALYSIS OF HEAT SHOCK REGULONS |
14:00-14:30 |
Leyfer D., Funari V., Berwick R., Haverty P., Frith M., Tolan D. Boston University, Boston, USA A NOVEL ALGORITHM FOR IN-SILICO EST EXPRESSION PROFILING |
14:30-15:00 |
Milanesi L., Rizzi R.. Institute of Biomedical Technology CNR-ITB, Milan, Italy MICROARRAY IMAGING DATA READER SPOTVIEW |
15:00-15:30 |
Coffee-break |
15:30-16:00 |
1Likhoshvai V.A., 1Matushkin Yu.G., 2 Fadeev S.I.2, 3Klishevich M.A., 3Vernikovskaya E.V., 3Purtov A.V., 3Osokina V.A. |
16:00-16:30 |
Galimzyanov A.V., Tchuraev R.N. Institute of Biology, Ufa Research Center, Russian Academy of Sciences, Ufa, Russia STRUCTURAL STABILITY OF DROSOPHILA CONTROL GENE SUBNETWORK: COMPUTER EXPERIMENTS, QUANTITATIVE AND QUALITATIVE EVALUATION |
16:30-17:00 |
17:00-17:30 Closing Ceremony; Comments of Chairpersons