1 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z
1
5
A
- activated database 42
- active database 15
- activity 14 52
- adduct formations 45
- alignment 13 73 85
- alternative splicing 67
- alu repeats 89
- amino acid composition 73
- amino acid sequence 111
- amino acid sequences 85
- amino acid substitutions 106 107
- analysis tools 1
- and RNA secondary structure 82
- anthology 74
- antigen determinant 113
- antigenic determinant 116
- antisense oligonucleotide 81
- antiviral response 18
- apolipoprotein 113 117
- arabidopsis thaliana 24
- artificial neural networks 30
- asymmetrical coding sequences 69
- asymmetrical repartition 69
- AUG triplets 62
- automata 21
- automated visualization 18
B
- B-DNA 127
- bacterial genomes 39
- bacterial species 69
- base pairing free energy 63
- bending stiffness energy 54
- benzopyrene 45
- binary classification 77
- binding sites 10 11 12 13 15 38 68
- bioinformatics 19 119
- bioprocesses regulation 28
- biosyntesis 10
- business game 122
- bZIP domain 106
C
- Ca-dependent proteins 86
- caenorhabditis. elegans 3
- cell signaling 21
- cellular automata 121
- cellular location 105
- central limit theorem 42
- chloroplasts 47
- cholesterol 10
- chromosome 93
- chromosome evolution 93
- chromosome segmentation 79
- classification 53
- cleavage site 127
- cluster of orthologous groups 87
- coding regions 84
- coding sequences 72
- codon distribution 96
- codons 73
- commerce 120 121 122
- compensatory mutations 89
- complementary duplexes 44
- composite regulatory elements 12
- computer analysis 59 63
- computer experiment 85
- computer program 60
- computer simulation 93
- confirmation and physico-chemical DNA properties 52
- conformation 127
- conformational and physico-chemical properties of DNA 53
- conformational features 15
- conformational stability 27
- consensus 91
- consensus words 66
- considerable asymmetry 59
- context analysis 84
- context sequences 61
- contigs 67
- core-polymerase 109
- correlation analysis 106
- correlations 107
- cosmid sequence scanning 80
- CpG islands 29 32
- cytochrome p450 97
D
- D.melanogaster 66
- data input 6
- database 1 2 3 4 5 6 8 9 11 12 13 14 17 18 55 98
- database activation 36
- database integration 16 61
- databases 74
- decision making 104
- development 3
- developmental stages 4
- devolopment of c.elegans 23
- dielectric function 58
- differentiation 4 9
- DNA bendability 34
- DNA binding sites 2
- DNA context 95
- DNA curvature 66
- DNA functional sites 52
- DNA recognition mechanisms 108
- DNA regulatory regions 11
- DNA replication 69
- DNA sequences 90
- DNA structure 34
- DNA topoisomerase I 110 127
- DNA-bending stiffness 32
- DNA-binding 106 107
- DNA-binding activity 7
- DNA-binding domains 12
- DNA-protein interaction 12
- DNA/RNA 14
- DNA/RNA secondary structure 45 89
- dog genome 91
- dosage compensation 33
- double helix 82
- Drosophila 17 35
- Drosophila melanogaster 3
- Drosophila melanogastr promoter sequences 35
- Drosophila promoters 33
- dynamic core 86
- dynamic of genes activities 26
- dynamic phase transition 81
- dynamic programming 103
- dynamic systems 121
E
- E.coli genome 114
- E.coli mRNAs 41
- ecology 120
- economics 120 121 122
- education 119 120 121 122
- electrostatic interactions 40
- enhancers 5
- entropy 77 78
- envelope protein 113
- equilibrium 120
- equilibrium constants 14
- erythroid cell 4
- erythroid cells 9
- escherichia coli 39
- eucaryotic promoters 31
- euclidian metrics 86
- eukariotes 8
- eukariotic organisms 37
- eukariotic promoters 38
- eukariots 50
- eukarioyic mRNA 60
- eukaryotic genes 5
- eukaryotic genomes 16
- eukaryotic promoters 29 32
- eukaryotic transcription factors 53
- evolution 3 96 97
- evolutionarily conserved sequence 50
- exon/intron structure prediction 92
- exons 45 65
- expression data 17
- expression dynamics 4
- expression pattern 5
- expression regulation 11
- extracellular proteins 112
- extreme conditions 28
F
- fitness landscape 81
- flower morphogenesis 24
- fold assignment 105
- fold recognition 102
- formal language 21
- frequency dictionaries 86
- frequency dictionary 77 78
- function 74
- functional activity 51
- functional annotation 105
- functional determinants 72
- functional genomics 94
- functional motifs 48
- functional site 111
- functional sites 14
- fuzzy logic 52 104
G
- G-protein coupled receptors 72
- game training 120 121
- gamma-proteobacterium 64
- gapped nucleotide correlations 35
- GATA 31
- GC-content 79
- GC-rich regions 51
- GCC element 51
- gene activity 26
- gene expression 4 9 75
- gene families 100
- gene finding 73
- gene function 55
- gene mapping 76
- gene net 25
- gene networks 6 8 10 18
- gene orders 93
- gene recognition 65 67
- gene structure 71
- gene structures 98
- gene-specific regulation 12
- genes 1 3 10 11 92
- genes of photosyntesis 11
- genetic code 73
- genetic language 20
- genetic networks 17 26 55
- genetic regulatory networks 24
- genetic text 57 78
- genom regulation 113
- genome characterization 80
- genome data 88
- genome sequences 87 94
- genomic analysis 114
- genomic DNA sequences 79
- genomic sequences 105
- globin genes 38
- glucorticoid-controlled gene 7
- glycoprotein 117
- glycosylphosphatidylinositol anchoring 112
- grammar 21
- growth factors 4
H
- haemophilus influenzae 39
- hairpin formation 41
- helix-turn-helix dna-binding motif 114
- hepatocarcirogens action 7
- hidden Markov models 29 34 79
- hierarchical level 27
- high-expression mRNA 60
- high-level query luanguage CPL 61
- HNF3 7
- holo-polymerase 109
- homeobox 3
- homeodomain proteins 50
- homeospecific site 43
- homology search 68
- HOX-clusters 3
- hox-networks 3
- hoxb3 binding site 50
- human 109
- human genes 67
- human genome 122
- human immunodeficiency virus 113 117
- human lactoferrin 115
- human population genofond 99
- human RNA polymerase II promoters 34
- humanitarian science 119
- hydrophobicity profile 117
- hypersensitive sites 45
I
- Identifications of matrix/scaffold attachment regions 46
- immune cell activation 37
- immunoglobulin 90
- immunoglobulin superfamily 92
- inducible regulation 12
- information 77
- information analysis 122
- information context 56
- information fusion 19
- integrated coding potential 68
- interferon-induced Mx1 protein 25
- interferon-inducible genes 8
- Internet 6 18 74
- Internet-based recogniton 36
- interspersed repetitive elements 91
- intracekkukar liquids 58
- intron detection 75
- intron structure 75
- inverse-folding protocol 102
- Ising model 82
J
- japanese encephalitis virus 116
- japanese puffer fish genome 80
- Java 23
- java applet 18
- java applets 17
K
L
- lamin 66
- large scale genome sequencing 98
- law 120 121 122
- leucine motif 118
- ligand binding sites 2
- linear discriminant analysys 46
- linkage analysis 126
- lipid metabolism 10
- living waves 120
- local multiple align 66
- long-range interaction 58
- long-terminal repeat 49
- low-expression mRNA 60
M
- M/SAR DNA 66
- mammalian chromosomes 76
- mathematical modelling 26
- mechanism 7 8
- mechanisms of expression regulation 25
- membrane 118
- metabolic network control 19
- metaprofiles 29
- mevalonate pathway 10
- minimalist model genome 80
- mitochondrial ATP synthase 118
- mitochondrial DNA 123
- mobile genetics elements 48
- model 23 25
- modular structure 124
- molecular functions 48
- molecular genetic regulatory systems 20
- molecular genetic techniques 99
- molecular genetics databases 125
- molecular information system 19
- molecular mechanisms 40
- molecular modelling 116
- molecular systematic 123
- Monte Carlo 101
- Monte-Carlo simulation 71
- mRNA 4 96
- mRNA forms 45
- mRNA leaders 14
- MS SQL Server 6
- multiple alignment 91 116
- multiple sequence alignment 84
- mutational analysis 97
- mutational hotspots 95
- mutational spectra 95
- mutual information 70 71 101
- mycoplasma genitalium 22
N
- natural science 119
- negative selection 62
- nematode caenorhabditis elegans 49
- neural networks 72
- NF-Y 31
- nitrogen fixation 11
- NON-LTR 49
- nucleosomal DNA 54
- nucleotide context 15
- nucleotide frequency profiles 32
- nucleotide sequence 78 84 97
- nucleotide sequence alignment 83
- nucleotide sequence samples 125
- nucleotide sequences 70 86 89 95
- nucleotide sequences analysis 125
- nukleotide sequences 47
- numerical simulation 96
O
- o-aminoazotoluene 7
- object-oriented language 57
- oct genes 43
- oct proteins 43
- oct-1 promoter 43
- octamer site 43
- oligonucleotide 110
- oligonucleotide motifs 38
- ontogenesis 4
- operon 64
- orthologs 87
P
- P53 45
- packing dencity 117
- pair structural alignment 103
- pairwise and multiple alignment 124
- paralogs 87
- pattern recognition 57
- patterns 56
- pedigree data 126
- peeling technique 126
- periodicity 71 101
- phenotypic analysis 94
- physical and chemical features 15
- physico-chemical properties 127
- plant 11
- polyadenilation signals 68
- polyanion binding 115
- posttranslational modification 112
- POU domain 43
- pre-mRNA 75
- pre-mRNA processing sites 14
- predicted genes 98
- predicting 44
- prediction 52
- prediction tools 68
- procariote model cell 22
- program generation 42
- promoter 1
- promoter recognition 36
- promoter-polymerase recognition 40
- promoters 5 14 30 37 40
- protein 2 4 74 103
- protein binding sites 84
- protein coding genes 68
- protein conformation 71 104
- protein sequence 73 101
- protein sequences 100
- protein structure 102
- protein structure similarity 113 117
- protein-binding sites 14
- protein-DNA interactions 115
- protein-protein interaction 12 109
- proteins 104 105 118
- protist DNA 65
- purine and arginine regulons 39
Q
- query retrieval language 74
R
- radiation hybrids 76
- random sequences 78
- receptor 2
- recognition 31 50
- recognition mechanism 110
- recognition program generation 111
- regilatory region 7
- regilatory regions 5 6 8
- regilatory regions database 10
- regression analysis 83 97
- regulation 5
- regulaton mechanisms 27
- regulaton of erythropoiesis 18
- regulaton of metabolism 20
- regulatory elements 47 89
- regulatory feedbacks 8
- regulatory regions 1 37 51
- regulatory sequences 16 50
- repeated elements 68
- replication origin 57
- retrotransposons 49
- ribosomal 16s RNA 86
- ribosomal protein 64
- RNA polymerase II 109
- RNA secondary structure 64 75 81
S
- sea urchin 17
- sea urins 3
- selective advantage 69
- selective model 76
- self-organization 119
- sequence analysis 88 90
- sequence comparison 87
- sequence complexity 32
- sequence data representation 88
- sequence dependent and independent enzymes 108
- sequence similarity 101 123
- sequences 13
- Shine-Dalgarno sequence 63
- sigma subunit 109
- signal processing 30
- signal transdiction 2
- silencers 5
- similarity 104
- similarity profiles 124
- site recognition 39 42 90
- sites 5
- Sp1 31
- specific sequence motifs 35
- spectral analysis 30
- splice sites 68
- splicing 75
- splicing sites 65
- SRS 14
- start codon 62
- statistical significance 83
- statistical thermodynamics 82
- statistically significant alignment matrix 56
- stochastic geometry 104
- stop codons 41
- storage protein genes 11
- strong base correlations 70
- structural and compositional features 59
- structural features 60
- structural profile 34
- structure 74
- structure alignment 104
- subcellular localization 112
- symbol composition 77
- symbolic chain 77
- synergism or antagonism 12
- synergy 119
T
- T-cell receptor 90
- TATA-binding protein 109
- TATA-binding protein affinnity 44
- TATA-box 31 32
- TATA-box signals 68
- TBP 31
- the basic principles 108
- threading 102
- three dimensional structure 2
- tissue specificity 38
- tissue-specific induction 12
- transcription 5 6 8 10 11 50 69 109
- transcription control elements 29
- transcription factor 8 9 10 11 12 13 15 55 106 107
- transcription factor binding sites 37
- transcription factors 1 4 5 31
- transcription regulation 9 36 47 55
- transcription regulatory patterns 39
- transcription regulatory regions 124
- transcription termination 41
- transcriptional activation 115
- transcriptional regulation 114
- transcriptional start 34
- transduction pathway 21
- transgenic rescue 94
- translation 96
- translation initiation 62
- trinucleotide frequency 62
- triplet periodicity 70
U
V
- vaccine 116
- verifying the syntax 6
- vertebrate ontogenesis 9
- vertebrates 3 17
- viewer 74
- virtual whole cell simulation 22
- visualization 125
- vocabularies 6
- VRML 23